Wall clock time and date at job start Sat Apr 11 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00689 * 2 1 4 4 C 1.53003 * 109.46907 * 269.99962 * 3 2 1 5 5 N 1.46899 * 109.46892 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99825 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47488 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99509 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00281 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99586 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00339 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99453 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00177 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46817 * 89.99980 * 14 12 10 16 16 H 1.48500 * 109.47210 * 209.99902 * 14 12 10 17 17 H 1.48494 * 109.47144 * 330.00023 * 14 12 10 18 18 C 1.34776 * 119.99557 * 179.97438 * 2 1 3 19 19 O 1.21290 * 119.99783 * 174.57085 * 18 2 1 20 20 C 1.50696 * 120.00324 * 354.56973 * 18 2 1 21 21 H 1.08997 * 108.56382 * 36.21744 * 20 18 2 22 22 C 1.51782 * 108.61839 * 154.15247 * 20 18 2 23 23 C 1.52985 * 110.88504 * 188.12418 * 22 20 18 24 24 N 1.47197 * 108.66420 * 273.53758 * 23 22 20 25 25 C 1.33369 * 120.42835 * 71.95418 * 24 23 22 26 26 O 1.21289 * 119.88904 * 179.71539 * 25 24 23 27 27 C 1.51422 * 120.22113 * 359.73884 * 25 24 23 28 28 C 1.51791 * 108.61664 * 278.41559 * 20 18 2 29 29 H 1.09000 * 109.46722 * 95.20841 * 1 2 3 30 30 H 1.08993 * 109.47802 * 215.21450 * 1 2 3 31 31 H 1.09006 * 109.46836 * 335.21568 * 1 2 3 32 32 H 1.08995 * 109.47423 * 149.99525 * 3 2 1 33 33 H 1.09002 * 109.47137 * 29.99080 * 3 2 1 34 34 H 1.08995 * 109.47436 * 59.99571 * 4 3 2 35 35 H 1.09002 * 109.46959 * 299.99233 * 4 3 2 36 36 H 1.00901 * 110.99902 * 303.94808 * 5 4 3 37 37 H 1.09005 * 109.47425 * 59.99739 * 6 5 4 38 38 H 1.09004 * 109.46996 * 300.00431 * 6 5 4 39 39 H 0.96995 * 120.00229 * 0.02562 * 9 7 6 40 40 H 0.97005 * 120.00222 * 180.02562 * 13 12 10 41 41 H 1.08995 * 109.19507 * 308.48507 * 22 20 18 42 42 H 1.08999 * 109.19232 * 67.81224 * 22 20 18 43 43 H 1.09004 * 109.60361 * 33.28674 * 23 22 20 44 44 H 1.08997 * 109.60811 * 153.77589 * 23 22 20 45 45 H 0.97002 * 119.78332 * 251.93505 * 24 23 22 46 46 H 1.09003 * 109.63093 * 48.44862 * 27 25 24 47 47 H 1.08998 * 109.63211 * 168.83856 * 27 25 24 48 48 H 1.08992 * 109.22500 * 292.39959 * 28 20 18 49 49 H 1.09001 * 109.22009 * 51.74853 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7102 -1.4425 5 7 3.1868 2.9826 -1.4425 6 6 3.4506 3.4382 -2.8140 7 6 4.2028 4.7433 -2.7740 8 8 4.4905 5.2449 -1.7077 9 7 4.5550 5.3537 -3.9228 10 6 5.2390 6.5414 -3.8862 11 1 5.4958 6.9876 -2.9368 12 6 5.6026 7.1704 -5.0706 13 7 5.2905 6.6272 -6.2257 14 14 6.5338 8.7890 -5.0209 15 1 7.9941 8.5196 -5.0060 16 1 6.1912 9.5942 -6.2207 17 1 6.1564 9.5398 -3.7966 18 6 2.1388 -1.1672 0.0005 19 8 3.3476 -1.1697 -0.0989 20 6 1.3903 -2.4693 0.1246 21 1 0.4477 -2.3805 -0.4153 22 6 2.2168 -3.5667 -0.5207 23 6 1.4216 -4.8710 -0.6038 24 7 1.5911 -5.6073 0.6594 25 6 1.0024 -5.1772 1.7762 26 8 1.1445 -5.7944 2.8106 27 6 0.1568 -3.9213 1.7569 28 6 1.0844 -2.7145 1.5910 29 1 -0.3633 -0.0933 -1.0234 30 1 -0.3634 -0.8395 0.5925 31 1 -0.3633 0.9331 0.4308 32 1 3.1500 1.1382 0.5139 33 1 1.6086 2.0284 0.5137 34 1 1.5003 1.8406 -1.9564 35 1 3.0418 0.9505 -1.9563 36 1 2.6905 3.6864 -0.9166 37 1 2.5053 3.5800 -3.3380 38 1 4.0470 2.6904 -3.3368 39 1 4.3240 4.9531 -4.7754 40 1 5.5446 7.0661 -7.0526 41 1 2.5022 -3.2564 -1.5258 42 1 3.1163 -3.7333 0.0718 43 1 0.3661 -4.6467 -0.7575 44 1 1.7940 -5.4743 -1.4317 45 1 2.1343 -6.4107 0.6797 46 1 -0.5425 -3.9634 0.9219 47 1 -0.3953 -3.8371 2.6929 48 1 2.0157 -2.9014 2.1255 49 1 0.6022 -1.8311 2.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713619382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:41 Heat of formation + Delta-G solvation = -141.095032 kcal Electronic energy + Delta-G solvation = -29196.195509 eV Core-core repulsion = 24963.574567 eV Total energy + Delta-G solvation = -4232.620942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74324 -40.60033 -40.16062 -37.83055 -37.24803 -36.26565 -35.74841 -34.85998 -33.29017 -32.16237 -31.05872 -28.43019 -27.98189 -26.97537 -25.59801 -25.11694 -23.57158 -22.06450 -21.12562 -20.72187 -20.06269 -19.88350 -18.51099 -18.24434 -17.92442 -17.41537 -17.24129 -17.00932 -16.49962 -16.34663 -15.94525 -15.82308 -15.39692 -15.28134 -14.99668 -14.96621 -14.66153 -14.42535 -14.27376 -13.89064 -13.81382 -13.53428 -13.46277 -13.35427 -13.18729 -13.03793 -12.92938 -12.84395 -12.73913 -12.48390 -12.42906 -12.12276 -12.07802 -11.82987 -11.69045 -11.52252 -10.90027 -10.70702 -10.40491 -10.11754 -10.03346 -9.70209 -9.37272 -8.47862 -5.96935 1.37670 1.41627 1.53591 1.54542 1.69245 1.92492 2.02671 2.29287 2.41560 2.97117 3.19135 3.38925 3.47308 3.55710 3.72669 3.79704 3.98238 4.09285 4.18402 4.24130 4.28795 4.35490 4.41195 4.44927 4.47689 4.48396 4.51163 4.56423 4.66639 4.72810 4.74615 4.85930 4.91212 4.98513 5.00853 5.04574 5.18639 5.29698 5.39800 5.50609 5.84270 5.87961 6.05678 6.30789 6.36258 6.43287 6.58221 7.10837 7.18164 7.25195 7.53820 8.09019 8.69486 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032344 B = 0.001581 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.480205 B =17701.891424 C =18004.659259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.612 5.612 3 C 0.121 3.879 4 C 0.058 3.942 5 N -0.685 5.685 6 C 0.069 3.931 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.079 0.921 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.272 1.272 18 C 0.505 3.495 19 O -0.585 6.585 20 C -0.096 4.096 21 H 0.137 0.863 22 C -0.127 4.127 23 C 0.113 3.887 24 N -0.719 5.719 25 C 0.506 3.494 26 O -0.612 6.612 27 C -0.125 4.125 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.349 0.651 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.401 0.599 46 H 0.133 0.867 47 H 0.105 0.895 48 H 0.041 0.959 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 -23.546 7.102 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.072 4.072 5 N -0.319 5.319 6 C -0.064 4.064 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.209 5.209 10 C -0.466 4.466 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.197 1.197 18 C 0.295 3.705 19 O -0.464 6.464 20 C -0.117 4.117 21 H 0.155 0.845 22 C -0.166 4.166 23 C -0.010 4.010 24 N -0.368 5.368 25 C 0.295 3.705 26 O -0.495 6.495 27 C -0.165 4.165 28 C -0.137 4.137 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.237 0.763 46 H 0.151 0.849 47 H 0.124 0.876 48 H 0.060 0.940 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.325 -23.564 8.123 30.936 hybrid contribution 0.483 0.773 -0.771 1.194 sum -17.843 -22.791 7.352 29.864 Atomic orbital electron populations 1.22282 0.76370 1.05440 1.03790 1.47959 1.08769 1.04845 1.72830 1.21269 0.97626 0.85547 0.95801 1.22201 0.96340 0.90692 0.97933 1.59873 1.52900 1.06229 1.12888 1.21484 0.99602 0.93790 0.91490 1.20839 0.84622 0.88246 0.83868 1.90490 1.60782 1.68704 1.30976 1.41923 1.50397 1.21075 1.07511 1.19689 1.33352 0.99313 0.94229 0.90294 1.26054 0.98342 1.02882 0.93944 1.69669 1.47129 1.41296 0.97925 0.84910 0.78201 0.77084 0.78023 1.19815 1.19349 1.19694 1.21454 0.87579 0.86618 0.74890 1.90744 1.16960 1.87910 1.50814 1.21112 1.01322 0.90670 0.98615 0.84510 1.21680 0.98529 0.94639 1.01739 1.22012 1.02390 0.91628 0.84980 1.46111 1.51034 1.29832 1.09868 1.21267 0.79886 0.86798 0.82591 1.90745 1.64958 1.60343 1.33419 1.21987 0.97672 0.89510 1.07337 1.21133 0.99602 0.99005 0.93975 0.90750 0.88229 0.89483 0.92325 0.88193 0.93042 0.92645 0.83170 0.90974 0.88644 0.76939 0.91241 0.90006 0.93224 0.87108 0.86724 0.76297 0.84935 0.87612 0.93961 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.27 9.81 127.77 1.25 1.52 16 2 N -0.61 -8.97 2.87 -846.76 -2.43 -11.40 16 3 C 0.12 2.51 5.67 86.38 0.49 3.00 16 4 C 0.06 1.40 6.01 86.30 0.52 1.92 16 5 N -0.69 -22.11 6.13 -517.92 -3.17 -25.29 16 6 C 0.07 2.42 6.17 85.55 0.53 2.94 16 7 C 0.44 21.17 7.82 87.65 0.69 21.85 16 8 O -0.62 -35.13 15.78 -3.08 -0.05 -35.17 16 9 N -0.57 -29.72 5.29 -306.98 -1.62 -31.35 16 10 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 14 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 C 0.51 9.36 6.62 87.66 0.58 9.94 16 19 O -0.58 -17.72 15.80 -3.06 -0.05 -17.77 16 20 C -0.10 -0.84 1.30 -12.34 -0.02 -0.85 16 21 H 0.14 0.05 6.52 -2.39 -0.02 0.04 16 22 C -0.13 -1.27 4.39 30.19 0.13 -1.14 16 23 C 0.11 0.36 6.47 86.24 0.56 0.92 16 24 N -0.72 -6.94 5.27 -462.59 -2.44 -9.38 16 25 C 0.51 7.69 7.06 88.11 0.62 8.32 16 26 O -0.61 -16.11 17.92 -3.06 -0.05 -16.16 16 27 C -0.13 -0.82 5.58 30.11 0.17 -0.65 16 28 C -0.10 -0.88 4.58 30.23 0.14 -0.74 16 29 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.10 -0.09 5.30 -2.39 -0.01 -0.10 16 31 H 0.09 0.26 7.83 -2.38 -0.02 0.24 16 32 H 0.06 1.65 7.50 -2.39 -0.02 1.63 16 33 H 0.10 1.60 7.86 -2.39 -0.02 1.58 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.35 11.10 8.43 -89.69 -0.76 10.34 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 40 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 41 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 42 H 0.05 0.85 7.96 -2.39 -0.02 0.83 16 43 H 0.11 -0.27 6.71 -2.39 -0.02 -0.29 16 44 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.40 3.81 8.91 -92.71 -0.83 2.99 16 46 H 0.13 -0.18 6.77 -2.39 -0.02 -0.20 16 47 H 0.11 0.71 8.13 -2.39 -0.02 0.69 16 48 H 0.04 0.69 7.86 -2.39 -0.02 0.67 16 49 H 0.10 0.57 6.89 -2.39 -0.02 0.56 16 Total: -1.00 -88.25 396.61 -1.88 -90.13 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -1.31 Total: 32.34 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 6.94 Total: 28.32 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -9.38 Total: -126.81 kcal Atomic # 8 Polarization: -68.95 SS G_CDS: -0.15 Total: -69.11 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -88.25 -1.88 -90.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713619382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.961 kcal (2) G-P(sol) polarization free energy of solvation -88.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds