Wall clock time and date at job start Sat Apr 11 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48509 * 109.46940 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47003 * 299.99718 * 3 2 1 6 6 H 1.48497 * 109.46995 * 60.00336 * 3 2 1 7 7 C 1.38798 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00103 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00400 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47210 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99987 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00360 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47240 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47181 * 180.02562 * 15 14 13 17 17 H 1.09004 * 110.28688 * 305.70377 * 16 15 14 18 18 C 1.54263 * 110.32122 * 67.82812 * 16 15 14 19 19 C 1.54374 * 105.06095 * 119.00268 * 18 16 15 20 20 N 1.48565 * 104.59541 * 23.84693 * 19 18 16 21 21 C 1.46898 * 111.00098 * 200.96396 * 20 19 18 22 22 C 1.53005 * 109.47248 * 294.28320 * 21 20 19 23 23 C 1.54264 * 110.03355 * 293.21503 * 22 21 20 24 24 C 1.54966 * 104.15891 * 217.13140 * 23 22 21 25 25 C 1.54893 * 102.77450 * 37.88793 * 24 23 22 26 26 C 1.53872 * 110.03477 * 175.99123 * 22 21 20 27 27 C 1.48561 * 104.22236 * 320.52120 * 20 19 18 28 28 H 0.96995 * 119.99924 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46935 * 59.99558 * 10 9 7 30 30 H 1.09001 * 109.46963 * 300.00081 * 10 9 7 31 31 H 0.97001 * 119.99826 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.46446 * 60.00400 * 14 13 11 33 33 H 1.09001 * 109.47239 * 300.00483 * 14 13 11 34 34 H 1.09001 * 109.47504 * 60.00201 * 15 14 13 35 35 H 1.09001 * 109.47205 * 300.00266 * 15 14 13 36 36 H 1.09002 * 110.32572 * 237.89295 * 18 16 15 37 37 H 1.09003 * 110.32581 * 0.02562 * 18 16 15 38 38 H 1.09002 * 110.41654 * 142.62918 * 19 18 16 39 39 H 1.09002 * 110.40843 * 265.07656 * 19 18 16 40 40 H 1.08991 * 109.47467 * 54.28490 * 21 20 19 41 41 H 1.09001 * 109.47082 * 174.28774 * 21 20 19 42 42 H 1.09010 * 110.01338 * 54.60014 * 22 21 20 43 43 H 1.08997 * 110.48727 * 335.77661 * 23 22 21 44 44 H 1.09002 * 110.48852 * 98.42325 * 23 22 21 45 45 H 1.08993 * 110.72263 * 279.57080 * 24 23 22 46 46 H 1.09006 * 110.76481 * 156.21815 * 24 23 22 47 47 H 1.09006 * 110.48282 * 203.40261 * 25 24 23 48 48 H 1.09000 * 110.48832 * 80.76198 * 25 24 23 49 49 H 1.08997 * 110.03396 * 238.57033 * 26 22 21 50 50 H 1.09001 * 110.02828 * 0.02562 * 26 22 21 51 51 H 1.08999 * 110.41188 * 280.69867 * 27 20 19 52 52 H 1.09000 * 110.40933 * 158.26135 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0011 13 7 2.8439 -6.3432 0.0008 14 6 2.3302 -7.7152 0.0019 15 6 3.5022 -8.6986 0.0018 16 6 2.9657 -10.1315 0.0024 17 1 2.2746 -10.2760 0.8329 18 6 2.2661 -10.4422 -1.3369 19 6 3.0658 -11.6144 -1.9448 20 7 3.7115 -12.2713 -0.7792 21 6 4.8713 -13.0686 -1.2000 22 6 4.3994 -14.2359 -2.0694 23 6 3.5687 -15.2229 -1.2234 24 6 3.9614 -16.6174 -1.7735 25 6 5.4759 -16.4595 -2.0575 26 6 5.6112 -15.0217 -2.5999 27 6 4.1293 -11.1421 0.0910 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8894 31 1 3.8007 -6.1836 0.0004 32 1 1.7207 -7.8756 -0.8874 33 1 1.7225 -7.8748 0.8926 34 1 4.1114 -8.5381 0.8913 35 1 4.1103 -8.5391 -0.8886 36 1 1.2317 -10.7392 -1.1638 37 1 2.3053 -9.5740 -1.9949 38 1 2.3960 -12.3100 -2.4503 39 1 3.8206 -11.2411 -2.6369 40 1 5.5545 -12.4419 -1.7731 41 1 5.3848 -13.4556 -0.3199 42 1 3.8023 -13.8635 -2.9019 43 1 3.8349 -15.1399 -0.1697 44 1 2.5029 -15.0428 -1.3640 45 1 3.4170 -16.8370 -2.6919 46 1 3.7872 -17.3910 -1.0256 47 1 5.8009 -17.1820 -2.8062 48 1 6.0505 -16.5763 -1.1386 49 1 5.6019 -15.0315 -3.6898 50 1 6.5356 -14.5718 -2.2377 51 1 5.0505 -10.6949 -0.2825 52 1 4.2602 -11.4821 1.1183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713724780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:52 Heat of formation + Delta-G solvation = -86.554882 kcal Electronic energy + Delta-G solvation = -26226.825526 eV Core-core repulsion = 22542.862837 eV Total energy + Delta-G solvation = -3683.962689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77663 -40.32351 -38.77660 -36.46576 -34.58788 -34.25809 -31.86764 -30.52617 -30.06492 -29.49776 -28.05897 -27.57346 -24.98503 -23.84100 -22.21274 -21.81586 -21.37459 -21.03630 -20.02792 -19.74191 -17.80978 -17.38998 -17.14986 -17.05124 -16.87930 -16.59480 -16.08895 -15.84197 -15.65419 -15.35414 -14.93805 -14.85127 -14.63773 -14.43020 -14.15866 -13.75758 -13.59680 -13.45474 -13.16024 -13.12556 -12.97339 -12.90472 -12.61759 -12.57622 -12.32863 -11.97595 -11.93633 -11.84841 -11.79453 -11.69065 -11.61423 -11.49245 -11.44261 -11.37731 -11.15897 -11.15461 -10.93132 -10.27129 -10.10345 -9.39697 -8.66957 -8.34831 -6.13017 1.27414 1.41587 1.47581 1.58636 1.61639 2.26069 2.30721 2.99561 3.03339 3.32657 3.55976 3.69538 3.76268 3.82216 3.89152 3.94040 4.01935 4.15675 4.23245 4.30900 4.33467 4.37696 4.47090 4.51012 4.54530 4.62232 4.63925 4.66435 4.71460 4.74757 4.79537 4.84716 4.90746 4.91116 4.95775 4.99801 5.04601 5.09678 5.13226 5.17323 5.27480 5.29667 5.39940 5.41725 5.42120 5.46386 5.49763 5.56898 5.92491 6.12703 6.20082 6.52208 7.06657 7.25699 8.74782 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.043263 B = 0.001361 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.053232 B =20565.289390 C =20816.437946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.713 5.713 14 C 0.120 3.880 15 C -0.108 4.108 16 C -0.084 4.084 17 H 0.079 0.921 18 C -0.125 4.125 19 C 0.037 3.963 20 N -0.519 5.519 21 C 0.055 3.945 22 C -0.087 4.087 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.120 4.120 27 C 0.041 3.959 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.052 0.948 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.373 -32.833 -3.318 36.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.367 5.367 14 C -0.003 4.003 15 C -0.146 4.146 16 C -0.103 4.103 17 H 0.097 0.903 18 C -0.163 4.163 19 C -0.091 4.091 20 N -0.242 5.242 21 C -0.073 4.073 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.167 4.167 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.087 4.087 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.070 0.930 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.903 -33.482 -3.046 36.381 hybrid contribution 2.170 1.917 -0.454 2.932 sum 16.074 -31.564 -3.500 35.594 Atomic orbital electron populations 1.70192 1.08009 1.28555 1.48084 1.26128 0.95947 1.03319 0.93709 0.84900 0.78628 0.76303 0.78073 1.17975 1.19948 1.19927 1.23243 0.95362 0.91972 1.58790 0.89871 1.85598 1.10703 0.99331 1.97052 1.23376 1.03502 0.94356 1.06837 1.20098 0.86266 0.86794 0.75166 1.90692 1.17527 1.86169 1.50257 1.45772 1.10308 1.05241 1.75400 1.21425 0.97509 0.79877 1.01517 1.21761 0.96369 0.92466 1.04005 1.21760 0.97149 0.93087 0.98352 0.90263 1.22440 0.99673 0.97830 0.96393 1.23066 0.97704 0.95450 0.92888 1.65387 1.25277 1.19168 1.14395 1.22410 0.91383 0.94729 0.98777 1.21749 0.96631 0.94855 0.97343 1.22237 0.99055 0.93701 0.99111 1.22566 0.96134 0.97175 1.00788 1.22350 0.96345 0.96372 1.01008 1.22186 0.97706 0.95463 1.00467 1.23130 0.96367 0.90512 0.98680 0.91992 0.87148 0.87168 0.74625 0.92560 0.92733 0.89508 0.90202 0.91484 0.91115 0.90413 0.93785 0.94709 0.90507 0.91741 0.91958 0.92643 0.91772 0.91436 0.91323 0.91538 0.91703 0.91431 0.92991 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.21 9.50 67.95 0.65 -30.57 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -5.11 6.16 71.23 0.44 -4.67 16 11 C 0.53 19.62 7.85 87.66 0.69 20.31 16 12 O -0.57 -26.69 15.86 -3.04 -0.05 -26.74 16 13 N -0.71 -17.48 5.56 -463.07 -2.57 -20.06 16 14 C 0.12 2.57 5.51 86.38 0.48 3.05 16 15 C -0.11 -1.40 4.51 30.59 0.14 -1.26 16 16 C -0.08 -1.12 3.07 -9.90 -0.03 -1.15 16 17 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 18 C -0.13 -1.84 6.15 31.49 0.19 -1.65 16 19 C 0.04 0.50 5.59 86.45 0.48 0.99 16 20 N -0.52 -7.03 5.20 -881.50 -4.58 -11.61 16 21 C 0.06 0.64 3.88 86.31 0.33 0.97 16 22 C -0.09 -0.97 2.89 -10.07 -0.03 -1.00 16 23 C -0.10 -1.24 6.17 31.70 0.20 -1.04 16 24 C -0.13 -1.29 6.91 31.91 0.22 -1.07 16 25 C -0.12 -1.09 6.83 31.67 0.22 -0.87 16 26 C -0.12 -1.12 6.46 31.32 0.20 -0.92 16 27 C 0.04 0.49 6.04 86.45 0.52 1.02 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.42 7.09 8.47 -92.71 -0.79 6.31 16 32 H 0.06 1.36 7.03 -2.38 -0.02 1.34 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.08 6.94 -2.39 -0.02 1.07 16 38 H 0.08 1.08 7.59 -2.39 -0.02 1.06 16 39 H 0.04 0.59 7.89 -2.39 -0.02 0.57 16 40 H 0.03 0.40 7.96 -2.39 -0.02 0.38 16 41 H 0.08 0.86 8.03 -2.39 -0.02 0.85 16 42 H 0.06 0.81 6.90 -2.38 -0.02 0.79 16 43 H 0.06 0.82 7.78 -2.39 -0.02 0.80 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 51 H 0.05 0.57 7.71 -2.39 -0.02 0.55 16 52 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -74.86 418.34 -0.80 -75.66 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.09 Total: 19.48 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 5.16 Total: -16.63 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -6.87 Total: -87.58 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -74.86 -0.80 -75.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713724780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.897 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds