Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47076 * 239.99387 * 3 2 1 5 5 H 1.48498 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47297 * 119.99794 * 3 2 1 7 7 C 1.38800 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99805 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47037 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00224 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00201 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00335 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.50091 * 35.07513 * 14 13 11 16 16 C 1.53119 * 109.50466 * 274.99975 * 14 13 11 17 17 C 1.53118 * 109.16458 * 182.40228 * 16 14 13 18 18 C 1.53038 * 109.27552 * 57.65296 * 17 16 14 19 19 N 1.46847 * 109.52465 * 300.82130 * 18 17 16 20 20 C 1.46896 * 111.00149 * 185.83722 * 19 18 17 21 21 C 1.53002 * 109.46989 * 66.04636 * 20 19 18 22 22 C 1.52996 * 109.47464 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47464 * 179.97438 * 22 21 20 24 24 C 1.53781 * 113.61609 * 174.99951 * 23 22 21 25 25 C 1.53781 * 87.08070 * 139.98229 * 24 23 22 26 26 C 1.53786 * 87.17350 * 334.52830 * 25 24 23 27 27 C 1.46853 * 111.19585 * 61.74250 * 19 18 17 28 28 H 0.96998 * 120.00212 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47197 * 59.99988 * 10 9 7 30 30 H 1.08998 * 109.47005 * 299.99992 * 10 9 7 31 31 H 0.96998 * 119.99645 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.52240 * 62.49393 * 16 14 13 33 33 H 1.09001 * 109.52381 * 302.31325 * 16 14 13 34 34 H 1.08997 * 109.50317 * 297.71360 * 17 16 14 35 35 H 1.08999 * 109.50304 * 177.59416 * 17 16 14 36 36 H 1.08998 * 109.46203 * 180.80434 * 18 17 16 37 37 H 1.09002 * 109.45346 * 60.82970 * 18 17 16 38 38 H 1.09005 * 109.47352 * 306.05232 * 20 19 18 39 39 H 1.08995 * 109.47149 * 186.04345 * 20 19 18 40 40 H 1.09008 * 109.47314 * 60.00150 * 21 20 19 41 41 H 1.08997 * 109.47357 * 300.00165 * 21 20 19 42 42 H 1.08997 * 109.47139 * 59.99852 * 22 21 20 43 43 H 1.09006 * 109.47243 * 300.00357 * 22 21 20 44 44 H 1.09003 * 112.90345 * 43.75005 * 23 22 21 45 45 H 1.08999 * 113.61181 * 25.43284 * 24 23 22 46 46 H 1.09000 * 113.69133 * 254.54111 * 24 23 22 47 47 H 1.09002 * 113.61445 * 89.11830 * 25 24 23 48 48 H 1.09002 * 113.61408 * 219.93560 * 25 24 23 49 49 H 1.08992 * 113.61675 * 140.02412 * 26 25 24 50 50 H 1.09000 * 113.60973 * 270.92699 * 26 25 24 51 51 H 1.08994 * 109.46112 * 58.27363 * 27 19 18 52 52 H 1.09006 * 109.45794 * 178.23918 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 1 1.4156 -7.7611 -0.5890 16 6 2.0327 -8.1494 1.4396 17 6 1.5534 -9.6037 1.4364 18 6 2.6234 -10.4867 0.7903 19 7 2.8717 -10.0313 -0.5835 20 6 3.7917 -10.9395 -1.2811 21 6 3.1211 -12.3024 -1.4650 22 6 4.0789 -13.2482 -2.1921 23 6 3.4085 -14.6112 -2.3755 24 6 4.2427 -15.6014 -3.2054 25 6 3.7937 -16.6884 -2.2146 26 6 3.6100 -15.5638 -1.1818 27 6 3.3778 -8.6528 -0.6026 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 3.8009 -6.1835 0.0022 32 1 1.2556 -7.5107 1.8596 33 1 2.9383 -8.0656 2.0404 34 1 0.6266 -9.6801 0.8679 35 1 1.3806 -9.9322 2.4612 36 1 2.2792 -11.5208 0.7735 37 1 3.5458 -10.4203 1.3672 38 1 4.7010 -11.0587 -0.6919 39 1 4.0427 -10.5235 -2.2567 40 1 2.2117 -12.1833 -2.0542 41 1 2.8699 -12.7184 -0.4894 42 1 4.9884 -13.3674 -1.6034 43 1 4.3297 -12.8319 -3.1679 44 1 2.3714 -14.5334 -2.7018 45 1 5.3136 -15.4006 -3.1775 46 1 3.8662 -15.7506 -4.2174 47 1 2.8619 -17.1785 -2.4968 48 1 4.5820 -17.3951 -1.9551 49 1 2.7221 -15.6820 -0.5609 50 1 4.5084 -15.3528 -0.6017 51 1 4.2967 -8.5953 -0.0192 52 1 3.5816 -8.3551 -1.6312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713780358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -60.345553 kcal Electronic energy + Delta-G solvation = -26511.819412 eV Core-core repulsion = 22828.993245 eV Total energy + Delta-G solvation = -3682.826167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09527 -39.95501 -39.44886 -36.38217 -34.64238 -34.56927 -32.88045 -31.73733 -29.60093 -28.20678 -27.64148 -26.44546 -25.26164 -23.98588 -23.19437 -21.88270 -21.46936 -20.93303 -20.16499 -19.79190 -17.84594 -17.64695 -16.87599 -16.74128 -16.51222 -16.40314 -16.13083 -15.82891 -15.68097 -15.49805 -14.93547 -14.82424 -14.73215 -14.55672 -14.38366 -13.75592 -13.54205 -13.42027 -13.27506 -13.22405 -13.16680 -12.94814 -12.86218 -12.62467 -12.42247 -12.22902 -12.11889 -11.89569 -11.78917 -11.72520 -11.56670 -11.42995 -11.33411 -11.12509 -10.94583 -10.93243 -10.76503 -10.27506 -10.09855 -9.27815 -8.66538 -8.34013 -6.12434 1.26492 1.44231 1.46663 1.56386 1.61572 2.17382 2.28257 2.98741 3.00049 3.33187 3.68394 3.71333 3.79399 3.83424 3.88293 3.95017 4.02787 4.04033 4.10226 4.24046 4.29222 4.31454 4.35533 4.46438 4.50525 4.55315 4.57997 4.65503 4.73064 4.77610 4.82483 4.87085 4.91778 4.93669 4.97116 5.00100 5.06763 5.09046 5.12557 5.15315 5.23586 5.30727 5.35131 5.41769 5.44485 5.49983 5.52870 5.70041 6.10355 6.15340 6.19918 6.51536 7.07011 7.25884 8.75008 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.033936 B = 0.001507 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.889818 B =18580.623326 C =18933.073492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.709 5.709 14 C 0.151 3.849 15 H 0.063 0.937 16 C -0.129 4.129 17 C -0.111 4.111 18 C 0.057 3.943 19 N -0.549 5.549 20 C 0.059 3.941 21 C -0.108 4.108 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.138 4.138 27 C 0.062 3.938 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.415 0.585 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.055 0.945 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -32.244 -1.751 35.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.363 5.363 14 C 0.046 3.954 15 H 0.082 0.918 16 C -0.167 4.167 17 C -0.149 4.149 18 C -0.070 4.070 19 N -0.275 5.275 20 C -0.068 4.068 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.130 4.130 24 C -0.177 4.177 25 C -0.183 4.183 26 C -0.175 4.175 27 C -0.066 4.066 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.252 0.748 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.074 0.926 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.092 -32.505 -2.007 34.739 hybrid contribution 2.318 1.546 0.407 2.816 sum 14.410 -30.959 -1.601 34.186 Atomic orbital electron populations 1.70178 1.08007 1.28676 1.47932 1.26125 0.95940 1.03305 0.93682 0.85008 0.77810 0.75688 0.79508 1.18640 1.20395 1.18632 1.23182 0.95366 0.92017 1.59026 0.89879 1.85600 1.10571 0.99225 1.97059 1.23371 1.03549 0.94274 1.06813 1.20060 0.86244 0.86622 0.74877 1.90695 1.17453 1.86031 1.49986 1.45733 1.10238 1.04795 1.75542 1.20868 0.97771 0.79919 0.96828 0.91840 1.21943 1.01378 0.97287 0.96141 1.21525 0.98840 0.93134 1.01395 1.22175 0.97807 0.99545 0.87514 1.61770 1.47326 1.01326 1.17035 1.22142 0.93229 0.92843 0.98571 1.21522 0.98787 0.93295 1.00978 1.21477 0.98093 0.93992 1.00453 1.22594 0.99603 0.93568 0.97203 1.22960 1.00267 0.96328 0.98145 1.22832 1.01639 0.96583 0.97270 1.23034 1.01922 0.96307 0.96266 1.22126 0.94980 0.88087 1.01456 0.91994 0.87205 0.87145 0.74768 0.94064 0.90727 0.92299 0.89729 0.89162 0.93957 0.94051 0.90653 0.92264 0.91718 0.91558 0.91842 0.89805 0.89880 0.91710 0.90280 0.91322 0.91812 0.89928 0.92647 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -5.13 6.16 71.23 0.44 -4.70 16 11 C 0.54 20.13 7.81 87.66 0.68 20.82 16 12 O -0.56 -26.80 15.53 -3.04 -0.05 -26.84 16 13 N -0.71 -18.32 5.08 -442.30 -2.25 -20.56 16 14 C 0.15 3.66 2.62 45.04 0.12 3.78 16 15 H 0.06 2.00 7.58 -2.39 -0.02 1.99 16 16 C -0.13 -2.95 5.58 30.67 0.17 -2.78 16 17 C -0.11 -2.03 6.09 30.65 0.19 -1.85 16 18 C 0.06 0.84 5.29 86.33 0.46 1.29 16 19 N -0.55 -9.03 4.66 -896.37 -4.17 -13.20 16 20 C 0.06 0.74 4.96 86.30 0.43 1.17 16 21 C -0.11 -1.22 5.14 30.59 0.16 -1.06 16 22 C -0.10 -0.96 5.05 30.59 0.15 -0.80 16 23 C -0.11 -1.08 3.66 -10.18 -0.04 -1.12 16 24 C -0.14 -1.27 7.64 31.12 0.24 -1.03 16 25 C -0.15 -1.29 8.07 31.12 0.25 -1.04 16 26 C -0.14 -1.26 7.65 31.21 0.24 -1.03 16 27 C 0.06 1.07 4.93 86.32 0.43 1.49 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 30 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 31 H 0.42 7.59 8.60 -92.71 -0.80 6.79 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.14 6.22 -2.39 -0.01 1.13 16 37 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.04 0.46 8.12 -2.38 -0.02 0.44 16 39 H 0.07 0.94 7.98 -2.39 -0.02 0.92 16 40 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.06 0.72 6.44 -2.39 -0.02 0.70 16 42 H 0.07 0.57 7.85 -2.39 -0.02 0.55 16 43 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.08 0.92 8.13 -2.39 -0.02 0.90 16 45 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.08 0.70 7.90 -2.39 -0.02 0.69 16 51 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.08 1.41 8.01 -2.38 -0.02 1.39 16 Total: -1.00 -74.91 420.62 -0.22 -75.13 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.08 Total: 21.97 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 5.02 Total: -16.39 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -6.13 Total: -89.87 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -74.91 -0.22 -75.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713780358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.781 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds