Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 C 1.53000 * 109.47340 * 240.00221 * 2 1 3 5 5 C 1.52998 * 109.47013 * 120.00054 * 2 1 3 6 6 C 1.53002 * 109.47217 * 60.00191 * 5 2 1 7 7 N 1.46896 * 109.47277 * 180.02562 * 6 5 2 8 8 C 1.46965 * 111.00150 * 169.99742 * 7 6 5 9 9 C 1.53769 * 108.95799 * 180.38269 * 8 7 6 10 10 H 1.09003 * 112.29684 * 187.30637 * 9 8 7 11 11 C 1.54696 * 108.24282 * 311.96526 * 9 8 7 12 12 C 1.54926 * 104.51858 * 87.50489 * 11 9 8 13 13 C 1.54689 * 104.52701 * 359.97438 * 12 11 9 14 14 H 1.09003 * 112.94019 * 148.19307 * 13 12 11 15 15 C 1.46967 * 110.99972 * 45.24437 * 7 6 5 16 16 N 1.48446 * 106.96809 * 63.53125 * 9 8 7 17 17 C 1.34777 * 128.45034 * 108.38740 * 16 9 8 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 9 19 19 C 1.50702 * 119.99928 * 180.27261 * 17 16 9 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 119.99909 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47104 * 90.00095 * 25 23 21 27 27 H 1.48502 * 109.46943 * 210.00235 * 25 23 21 28 28 H 1.48497 * 109.46910 * 330.00035 * 25 23 21 29 29 H 1.08998 * 109.47378 * 300.00091 * 1 2 3 30 30 H 1.09009 * 109.47136 * 59.99822 * 1 2 3 31 31 H 1.09001 * 109.47595 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47708 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47148 * 299.99988 * 3 2 1 34 34 H 1.08998 * 109.46888 * 59.99609 * 3 2 1 35 35 H 1.09003 * 109.46786 * 299.99994 * 4 2 1 36 36 H 1.08997 * 109.47360 * 59.99560 * 4 2 1 37 37 H 1.08997 * 109.47437 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.47429 * 299.99954 * 5 2 1 39 39 H 1.09007 * 109.46852 * 179.97438 * 5 2 1 40 40 H 1.08999 * 109.47114 * 59.99570 * 6 5 2 41 41 H 1.09002 * 109.46970 * 299.99995 * 6 5 2 42 42 H 1.09002 * 109.55406 * 60.54323 * 8 7 6 43 43 H 1.08993 * 109.64085 * 300.28339 * 8 7 6 44 44 H 1.08999 * 110.40324 * 206.41352 * 11 9 8 45 45 H 1.08999 * 110.40269 * 328.83968 * 11 9 8 46 46 H 1.09005 * 110.35201 * 241.29185 * 12 11 9 47 47 H 1.09011 * 110.66126 * 118.85624 * 12 11 9 48 48 H 1.08995 * 109.55765 * 299.45515 * 15 7 6 49 49 H 1.08998 * 109.55835 * 59.67131 * 15 7 6 50 50 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 51 51 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 52 52 H 0.97002 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 7 2.0190 -2.8561 2.4489 8 6 1.3630 -4.1616 2.6079 9 6 1.9009 -4.8394 3.8790 10 1 1.5463 -5.8650 3.9825 11 6 3.4451 -4.7488 3.8598 12 6 3.7625 -3.3858 4.5243 13 6 2.3774 -2.7936 4.8758 14 1 2.3950 -2.1756 5.7736 15 6 1.8539 -2.0180 3.6448 16 7 1.5044 -3.9851 5.0265 17 6 0.5745 -4.2290 5.9710 18 8 -0.0615 -5.2613 5.9435 19 6 0.3202 -3.2160 7.0574 20 16 -0.9806 -3.8257 8.1583 21 6 -1.0696 -2.4853 9.2985 22 1 -0.4229 -1.6289 9.1768 23 6 -1.9715 -2.5294 10.3526 24 7 -2.0384 -1.5279 11.2041 25 14 -3.0916 -4.0097 10.5620 26 1 -2.4214 -5.0203 11.4191 27 1 -4.3621 -3.5825 11.2014 28 1 -3.3819 -4.6028 9.2319 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 1.6766 -0.2075 2.1392 39 1 3.1300 -0.7216 1.2490 40 1 1.8932 -2.6776 0.3592 41 1 0.4399 -2.1638 1.2492 42 1 1.5796 -4.7866 1.7416 43 1 0.2858 -4.0218 2.6968 44 1 3.8809 -5.5659 4.4348 45 1 3.8139 -4.7657 2.8342 46 1 4.2870 -2.7356 3.8240 47 1 4.3561 -3.5273 5.4276 48 1 2.4246 -1.0969 3.5264 49 1 0.7991 -1.7789 3.7800 50 1 1.2352 -3.0583 7.6285 51 1 0.0049 -2.2739 6.6091 52 1 -2.6685 -1.5589 11.9409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713902035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -34.647995 kcal Electronic energy + Delta-G solvation = -28566.779755 eV Core-core repulsion = 24885.067918 eV Total energy + Delta-G solvation = -3681.711837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.96705 -38.74241 -37.80988 -35.15222 -32.44673 -32.04085 -31.31511 -29.54388 -28.93592 -27.63130 -27.60970 -25.84215 -25.56709 -24.66626 -22.63845 -21.26036 -20.71056 -18.82409 -18.59551 -17.73406 -17.04529 -16.25970 -15.64940 -15.42145 -15.07172 -15.01418 -14.89987 -14.63399 -14.27307 -14.15968 -13.90734 -13.84812 -13.51489 -13.38247 -12.97226 -12.83221 -12.68946 -12.66734 -12.35509 -12.18532 -12.07400 -11.99608 -11.78535 -11.40111 -11.34496 -11.26293 -11.24257 -11.04770 -11.01266 -10.85675 -10.79324 -10.60113 -10.57366 -10.48218 -9.86094 -9.48426 -9.00936 -8.66614 -8.50238 -8.44911 -6.92571 -6.29489 -4.01219 2.67094 2.94438 3.17898 3.32848 3.50186 3.58747 3.61310 4.32065 4.35671 4.38588 4.47264 4.51077 4.56925 4.71189 4.75241 4.82646 4.90885 4.97759 5.07971 5.09607 5.10728 5.16984 5.24452 5.30072 5.31183 5.35986 5.41109 5.45429 5.48681 5.54188 5.57894 5.60336 5.63441 5.65403 5.71599 5.73458 5.75988 5.77247 5.80271 5.86297 5.95711 5.99070 6.01456 6.06901 6.09293 6.11271 6.39587 6.82264 6.83735 7.70591 7.93603 8.40850 8.45922 9.16754 10.79726 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.002714 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.423297 B =10314.011559 C =11370.244623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.112 4.112 6 C 0.052 3.948 7 N -0.531 5.531 8 C 0.048 3.952 9 C 0.134 3.866 10 H 0.103 0.897 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.126 3.874 14 H 0.105 0.895 15 C 0.041 3.959 16 N -0.626 5.626 17 C 0.553 3.447 18 O -0.520 6.520 19 C -0.116 4.116 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.040 0.960 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.063 1.953 -25.123 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.200 4.200 5 C -0.149 4.149 6 C -0.075 4.075 7 N -0.256 5.256 8 C -0.081 4.081 9 C 0.030 3.970 10 H 0.121 0.879 11 C -0.151 4.151 12 C -0.151 4.151 13 C 0.022 3.978 14 H 0.123 0.877 15 C -0.088 4.088 16 N -0.363 5.363 17 C 0.342 3.658 18 O -0.395 6.395 19 C -0.267 4.267 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.058 0.942 50 H 0.114 0.886 51 H 0.112 0.888 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.413 0.391 -24.952 27.872 hybrid contribution -0.759 1.022 0.486 1.363 sum 11.654 1.413 -24.466 27.137 Atomic orbital electron populations 1.21954 0.94676 1.01918 1.01748 1.20530 0.95623 0.95491 0.95295 1.21860 1.00938 0.95271 1.01759 1.21925 1.00997 1.00282 0.96771 1.21788 1.01350 0.94386 0.97405 1.22292 0.97718 0.94408 0.93075 1.62061 1.57453 1.03357 1.02694 1.22594 0.96571 0.90927 0.98016 1.22330 0.94833 0.95473 0.84403 0.87871 1.22482 0.93920 0.97156 1.01592 1.22465 0.95313 0.96870 1.00443 1.22692 0.90133 0.87535 0.97422 0.87719 1.22882 0.99884 0.96296 0.89710 1.49413 1.38499 1.20936 1.27468 1.19946 0.77707 0.87349 0.80806 1.90700 1.47257 1.27236 1.74293 1.23238 1.04570 1.00632 0.98256 1.84790 1.45502 1.30530 1.30755 1.22300 1.26664 1.04928 1.12875 0.89414 1.24706 0.96076 0.96254 0.94246 1.69937 1.36278 1.30792 1.14702 0.86740 0.80775 0.83086 0.81291 1.19174 1.19931 1.15945 0.92623 0.92805 0.92456 0.92633 0.92755 0.92613 0.92429 0.92924 0.92588 0.91540 0.90988 0.90440 0.94587 0.89851 0.94286 0.91812 0.89889 0.89821 0.91647 0.89190 0.94183 0.88642 0.88809 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.12 37.15 0.30 -0.74 16 2 C -0.07 -0.45 0.80 -154.51 -0.12 -0.57 16 3 C -0.14 -0.88 8.47 37.16 0.31 -0.56 16 4 C -0.14 -0.85 8.12 37.16 0.30 -0.55 16 5 C -0.11 -0.79 3.49 -26.73 -0.09 -0.88 16 6 C 0.05 0.42 4.59 -3.82 -0.02 0.40 16 7 N -0.53 -4.85 3.85 -232.96 -0.90 -5.75 16 8 C 0.05 0.50 5.06 -3.39 -0.02 0.48 16 9 C 0.13 1.58 4.15 -65.57 -0.27 1.31 16 10 H 0.10 1.34 7.95 -51.93 -0.41 0.93 16 11 C -0.11 -1.06 6.19 -24.82 -0.15 -1.22 16 12 C -0.11 -1.03 6.19 -24.83 -0.15 -1.19 16 13 C 0.13 1.40 4.08 -65.10 -0.27 1.13 16 14 H 0.10 1.14 7.46 -51.93 -0.39 0.75 16 15 C 0.04 0.41 4.25 -2.93 -0.01 0.40 16 16 N -0.63 -8.96 2.76 -152.26 -0.42 -9.39 16 17 C 0.55 10.47 7.95 -10.98 -0.09 10.39 16 18 O -0.52 -11.75 16.20 5.55 0.09 -11.66 16 19 C -0.12 -2.35 5.16 36.01 0.19 -2.16 16 20 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 21 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 22 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 25 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 39 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.57 6.43 -51.93 -0.33 0.24 16 41 H 0.04 0.33 6.35 -51.93 -0.33 0.00 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 46 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 47 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 48 H 0.09 0.75 6.25 -51.93 -0.32 0.43 16 49 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 1.81 8.09 -51.91 -0.42 1.39 16 51 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 52 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 403.92 15.07 6.09 6.09 Total: -1.00 -32.99 403.92 -10.47 -43.46 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -9.52 Total: -2.61 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 0.12 Total: -5.83 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.54 Total: -41.04 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.99 -10.47 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713902035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.811 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds