Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 C 1.53000 * 109.47340 * 240.00221 * 2 1 3 5 5 C 1.52998 * 109.47013 * 120.00054 * 2 1 3 6 6 C 1.53002 * 109.47217 * 60.00191 * 5 2 1 7 7 N 1.46896 * 109.47277 * 180.02562 * 6 5 2 8 8 C 1.46965 * 111.00150 * 169.99742 * 7 6 5 9 9 C 1.53769 * 108.95799 * 180.38269 * 8 7 6 10 10 H 1.09003 * 112.29684 * 187.30637 * 9 8 7 11 11 C 1.54696 * 108.24282 * 311.96526 * 9 8 7 12 12 C 1.54926 * 104.51858 * 87.50489 * 11 9 8 13 13 C 1.54689 * 104.52701 * 359.97438 * 12 11 9 14 14 H 1.09003 * 112.94019 * 148.19307 * 13 12 11 15 15 C 1.46967 * 110.99972 * 45.24437 * 7 6 5 16 16 N 1.48446 * 106.96809 * 63.53125 * 9 8 7 17 17 C 1.34777 * 128.45034 * 108.38740 * 16 9 8 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 9 19 19 C 1.50702 * 119.99928 * 180.27261 * 17 16 9 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 119.99909 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47104 * 90.00095 * 25 23 21 27 27 H 1.48502 * 109.46943 * 210.00235 * 25 23 21 28 28 H 1.48497 * 109.46910 * 330.00035 * 25 23 21 29 29 H 1.08998 * 109.47378 * 300.00091 * 1 2 3 30 30 H 1.09009 * 109.47136 * 59.99822 * 1 2 3 31 31 H 1.09001 * 109.47595 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47708 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47148 * 299.99988 * 3 2 1 34 34 H 1.08998 * 109.46888 * 59.99609 * 3 2 1 35 35 H 1.09003 * 109.46786 * 299.99994 * 4 2 1 36 36 H 1.08997 * 109.47360 * 59.99560 * 4 2 1 37 37 H 1.08997 * 109.47437 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.47429 * 299.99954 * 5 2 1 39 39 H 1.09007 * 109.46852 * 179.97438 * 5 2 1 40 40 H 1.08999 * 109.47114 * 59.99570 * 6 5 2 41 41 H 1.09002 * 109.46970 * 299.99995 * 6 5 2 42 42 H 1.09002 * 109.55406 * 60.54323 * 8 7 6 43 43 H 1.08993 * 109.64085 * 300.28339 * 8 7 6 44 44 H 1.08999 * 110.40324 * 206.41352 * 11 9 8 45 45 H 1.08999 * 110.40269 * 328.83968 * 11 9 8 46 46 H 1.09005 * 110.35201 * 241.29185 * 12 11 9 47 47 H 1.09011 * 110.66126 * 118.85624 * 12 11 9 48 48 H 1.08995 * 109.55765 * 299.45515 * 15 7 6 49 49 H 1.08998 * 109.55835 * 59.67131 * 15 7 6 50 50 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 51 51 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 52 52 H 0.97002 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 7 2.0190 -2.8561 2.4489 8 6 1.3630 -4.1616 2.6079 9 6 1.9009 -4.8394 3.8790 10 1 1.5463 -5.8650 3.9825 11 6 3.4451 -4.7488 3.8598 12 6 3.7625 -3.3858 4.5243 13 6 2.3774 -2.7936 4.8758 14 1 2.3950 -2.1756 5.7736 15 6 1.8539 -2.0180 3.6448 16 7 1.5044 -3.9851 5.0265 17 6 0.5745 -4.2290 5.9710 18 8 -0.0615 -5.2613 5.9435 19 6 0.3202 -3.2160 7.0574 20 16 -0.9806 -3.8257 8.1583 21 6 -1.0696 -2.4853 9.2985 22 1 -0.4229 -1.6289 9.1768 23 6 -1.9715 -2.5294 10.3526 24 7 -2.0384 -1.5279 11.2041 25 14 -3.0916 -4.0097 10.5620 26 1 -2.4214 -5.0203 11.4191 27 1 -4.3621 -3.5825 11.2014 28 1 -3.3819 -4.6028 9.2319 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 1.6766 -0.2075 2.1392 39 1 3.1300 -0.7216 1.2490 40 1 1.8932 -2.6776 0.3592 41 1 0.4399 -2.1638 1.2492 42 1 1.5796 -4.7866 1.7416 43 1 0.2858 -4.0218 2.6968 44 1 3.8809 -5.5659 4.4348 45 1 3.8139 -4.7657 2.8342 46 1 4.2870 -2.7356 3.8240 47 1 4.3561 -3.5273 5.4276 48 1 2.4246 -1.0969 3.5264 49 1 0.7991 -1.7789 3.7800 50 1 1.2352 -3.0583 7.6285 51 1 0.0049 -2.2739 6.6091 52 1 -2.6685 -1.5589 11.9409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713902035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -54.009967 kcal Electronic energy + Delta-G solvation = -28567.619354 eV Core-core repulsion = 24885.067918 eV Total energy + Delta-G solvation = -3682.551436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97094 -39.77502 -38.78929 -35.98590 -34.70824 -33.17166 -32.30650 -30.43497 -30.18594 -28.16274 -28.10280 -27.89816 -26.61488 -25.50788 -23.54432 -22.24597 -21.59535 -20.14431 -19.42245 -19.24045 -18.40685 -17.23834 -17.16626 -16.60730 -16.49911 -16.35398 -15.78465 -15.61034 -15.49395 -14.95417 -14.87555 -14.81883 -14.74975 -14.51683 -14.32905 -13.78946 -13.67954 -13.60619 -13.37555 -13.26819 -13.06480 -12.99275 -12.77882 -12.67240 -12.58966 -12.51285 -12.12482 -12.11204 -11.99413 -11.89935 -11.77710 -11.41808 -11.40463 -11.23059 -11.21020 -11.20314 -11.02338 -10.58981 -9.81591 -9.31337 -9.05274 -8.54796 -6.26616 0.91032 1.28470 1.41242 1.46074 1.49625 1.97185 2.22001 2.63399 2.81954 2.83259 3.39569 3.59664 3.76509 3.86074 3.92202 3.94698 3.95226 3.98967 4.11910 4.14063 4.28334 4.33057 4.37586 4.43473 4.52719 4.59551 4.64466 4.65922 4.74222 4.77876 4.79643 4.84833 4.88028 4.90569 4.94977 5.07899 5.09121 5.09667 5.15190 5.19684 5.20376 5.24289 5.27036 5.43982 5.53401 5.53680 5.56214 5.67580 6.00304 6.04618 6.07697 6.43093 6.90085 7.01288 8.57652 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.002714 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.423297 B =10314.011559 C =11370.244623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.106 4.106 6 C 0.055 3.945 7 N -0.519 5.519 8 C 0.054 3.946 9 C 0.124 3.876 10 H 0.088 0.912 11 C -0.103 4.103 12 C -0.104 4.104 13 C 0.116 3.884 14 H 0.106 0.894 15 C 0.046 3.954 16 N -0.620 5.620 17 C 0.553 3.447 18 O -0.566 6.566 19 C -0.100 4.100 20 S -0.174 6.174 21 C -0.528 4.528 22 H 0.062 0.938 23 C 0.047 3.953 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.261 1.261 27 H -0.257 1.257 28 H -0.239 1.239 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.108 0.892 43 H 0.011 0.989 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.015 0.985 50 H 0.109 0.891 51 H 0.104 0.896 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.932 1.827 -27.159 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.143 4.143 6 C -0.072 4.072 7 N -0.244 5.244 8 C -0.075 4.075 9 C 0.022 3.978 10 H 0.106 0.894 11 C -0.141 4.141 12 C -0.142 4.142 13 C 0.013 3.987 14 H 0.124 0.876 15 C -0.083 4.083 16 N -0.355 5.355 17 C 0.341 3.659 18 O -0.445 6.445 19 C -0.251 4.251 20 S 0.053 5.947 21 C -0.676 4.676 22 H 0.080 0.920 23 C -0.158 4.158 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.186 1.186 27 H -0.181 1.181 28 H -0.163 1.163 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.126 0.874 43 H 0.029 0.971 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.088 0.912 48 H 0.131 0.869 49 H 0.034 0.966 50 H 0.127 0.873 51 H 0.122 0.878 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.328 0.301 -27.024 30.589 hybrid contribution -1.230 1.150 0.987 1.952 sum 13.098 1.451 -26.037 29.182 Atomic orbital electron populations 1.21955 0.95435 1.01466 1.01453 1.20514 0.94951 0.95822 0.95454 1.21848 1.01338 0.94902 1.01632 1.21901 1.01343 1.00132 0.96352 1.21733 1.01727 0.93531 0.97329 1.22326 0.96953 0.95104 0.92814 1.62141 1.56706 1.02786 1.02720 1.22539 0.94874 0.91949 0.98111 1.22596 0.96914 0.94545 0.83790 0.89389 1.22465 0.91350 0.97352 1.02974 1.22467 0.93805 0.96778 1.01171 1.23050 0.90826 0.86607 0.98181 0.87595 1.22867 0.98739 0.97106 0.89595 1.49414 1.36991 1.22493 1.26554 1.19609 0.78532 0.86364 0.81391 1.90674 1.49439 1.28764 1.75654 1.23167 1.02861 1.01236 0.97829 1.84710 1.48627 1.29881 1.31486 1.22412 1.26184 1.05124 1.13841 0.91970 1.25541 0.97446 0.98848 0.94002 1.70008 1.37350 1.32496 1.15450 0.85885 0.79591 0.79877 0.81132 1.18552 1.18103 1.16310 0.93670 0.92365 0.92984 0.91951 0.92479 0.93211 0.92440 0.92710 0.91963 0.92407 0.90101 0.89127 0.95991 0.87417 0.97104 0.91727 0.87756 0.87675 0.91242 0.86894 0.96634 0.87264 0.87816 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.12 71.98 0.58 -1.38 16 2 C -0.07 -0.75 0.80 -52.18 -0.04 -0.79 16 3 C -0.14 -1.49 8.47 71.98 0.61 -0.88 16 4 C -0.14 -1.33 8.12 71.98 0.58 -0.74 16 5 C -0.11 -1.26 3.49 30.59 0.11 -1.15 16 6 C 0.06 0.76 4.59 86.30 0.40 1.16 16 7 N -0.52 -8.26 3.85 -890.94 -3.43 -11.69 16 8 C 0.05 1.05 5.06 86.55 0.44 1.48 16 9 C 0.12 2.80 4.15 45.45 0.19 2.98 16 10 H 0.09 2.26 7.95 -2.39 -0.02 2.25 16 11 C -0.10 -1.63 6.19 31.83 0.20 -1.44 16 12 C -0.10 -1.57 6.19 31.83 0.20 -1.37 16 13 C 0.12 2.36 4.08 45.74 0.19 2.54 16 14 H 0.11 2.14 7.46 -2.39 -0.02 2.12 16 15 C 0.05 0.83 4.25 86.85 0.37 1.20 16 16 N -0.62 -17.33 2.76 -754.03 -2.08 -19.41 16 17 C 0.55 21.10 7.95 87.66 0.70 21.79 16 18 O -0.57 -26.14 16.20 -3.04 -0.05 -26.19 16 19 C -0.10 -4.06 5.16 71.24 0.37 -3.70 16 20 S -0.17 -9.10 18.55 -56.49 -1.05 -10.14 16 21 C -0.53 -31.28 10.04 67.95 0.68 -30.60 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.81 5.50 84.86 0.47 3.27 16 24 N -0.92 -56.13 13.97 21.65 0.30 -55.82 16 25 Si 0.91 45.63 27.74 68.60 1.90 47.53 16 26 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.24 -12.01 6.74 99.48 0.67 -11.34 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.74 6.43 -2.39 -0.02 0.73 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.80 6.34 -2.39 -0.02 0.79 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.09 1.07 6.43 -2.39 -0.02 1.05 16 41 H 0.02 0.38 6.35 -2.39 -0.02 0.37 16 42 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.01 0.27 8.12 -2.39 -0.02 0.25 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 1.27 7.84 -2.39 -0.02 1.26 16 46 H 0.10 1.21 7.86 -2.38 -0.02 1.19 16 47 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 48 H 0.11 1.58 6.25 -2.39 -0.01 1.56 16 49 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.11 4.11 8.09 -2.39 -0.02 4.09 16 51 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 52 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -72.60 403.92 2.46 -70.13 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.83 Total: 13.20 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 6.03 Total: -7.61 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -5.20 Total: -86.92 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.53 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.14 kcal Total: -72.60 2.46 -70.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713902035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.123 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds