Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50701 * 119.99808 * 2 1 4 4 C 1.31001 * 120.00152 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99727 * 5.46669 * 4 2 1 6 6 N 1.46896 * 109.46919 * 125.45865 * 5 4 2 7 7 C 1.46904 * 111.00277 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47267 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.47187 * 180.02562 * 8 7 6 10 10 C 1.53347 * 109.41703 * 295.12902 * 9 8 7 11 11 C 1.53192 * 109.15099 * 178.67421 * 10 9 8 12 12 N 1.46920 * 108.89157 * 54.57589 * 11 10 9 13 13 C 1.34776 * 120.63016 * 126.34591 * 12 11 10 14 14 O 1.21285 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00249 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47347 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00165 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00474 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99318 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00551 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46920 * 89.99858 * 21 19 17 23 23 H 1.48495 * 109.47133 * 209.99795 * 21 19 17 24 24 H 1.48498 * 109.47011 * 330.00293 * 21 19 17 25 25 C 1.46927 * 118.74255 * 306.32383 * 12 11 10 26 26 C 1.53041 * 109.46096 * 175.00166 * 9 8 7 27 27 H 1.09001 * 109.47280 * 234.93252 * 1 2 3 28 28 H 1.09000 * 109.47105 * 354.92761 * 1 2 3 29 29 H 1.08994 * 109.47308 * 114.93173 * 1 2 3 30 30 H 1.08999 * 109.47032 * 239.99703 * 3 2 1 31 31 H 1.09000 * 109.47411 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.47175 * 120.00086 * 3 2 1 33 33 H 1.07992 * 120.00199 * 185.47149 * 4 2 1 34 34 H 1.08998 * 109.47532 * 5.45910 * 5 4 2 35 35 H 1.08997 * 109.47018 * 245.45870 * 5 4 2 36 36 H 1.00910 * 111.00177 * 303.94934 * 6 5 4 37 37 H 1.09003 * 109.46635 * 59.99855 * 7 6 5 38 38 H 1.08998 * 109.46844 * 299.99883 * 7 6 5 39 39 H 1.09001 * 109.47295 * 59.99952 * 8 7 6 40 40 H 1.08998 * 109.47665 * 300.00314 * 8 7 6 41 41 H 1.08998 * 109.46009 * 55.02842 * 9 8 7 42 42 H 1.09004 * 109.68395 * 58.70720 * 10 9 8 43 43 H 1.09003 * 109.47605 * 298.51441 * 10 9 8 44 44 H 1.09006 * 109.58392 * 294.72165 * 11 10 9 45 45 H 1.08998 * 109.58764 * 174.44297 * 11 10 9 46 46 H 1.09001 * 109.47326 * 299.99891 * 15 13 12 47 47 H 1.08997 * 109.47201 * 60.00157 * 15 13 12 48 48 H 0.97000 * 119.99458 * 180.02562 * 20 19 17 49 49 H 1.08991 * 109.58834 * 173.39847 * 25 12 11 50 50 H 1.09004 * 109.58618 * 293.67997 * 25 12 11 51 51 H 1.09004 * 109.49755 * 61.43694 * 26 9 8 52 52 H 1.08998 * 109.52486 * 301.35158 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4137 -2.4367 -0.1232 6 7 1.9578 -3.2091 -1.2480 7 6 1.2513 -4.4882 -1.3990 8 6 1.8442 -5.2623 -2.5779 9 6 1.1079 -6.5943 -2.7356 10 6 1.3648 -7.4679 -1.5018 11 6 0.5984 -8.7860 -1.6509 12 7 0.9741 -9.4131 -2.9253 13 6 1.4219 -10.6839 -2.9596 14 8 1.5183 -11.3208 -1.9319 15 6 1.8028 -11.3134 -4.2747 16 16 2.3617 -13.0115 -3.9914 17 6 2.7327 -13.4916 -5.6456 18 1 2.5882 -12.7925 -6.4561 19 6 3.2105 -14.7682 -5.9072 20 7 3.3861 -15.6204 -4.9195 21 14 3.6031 -15.2774 -7.6611 22 1 5.0202 -14.9537 -7.9650 23 1 3.3856 -16.7385 -7.8127 24 1 2.7158 -14.5446 -8.5996 25 6 0.8520 -8.6290 -4.1618 26 6 1.6156 -7.3124 -3.9881 27 1 -0.3634 -0.5904 0.8411 28 1 -0.3633 1.0236 0.0909 29 1 -0.3633 -0.4332 -0.9318 30 1 2.8872 1.3629 -0.8900 31 1 1.5522 2.1336 -0.0005 32 1 2.8871 1.3629 0.8899 33 1 3.2383 -1.1366 0.0897 34 1 0.3574 -2.2334 -0.2994 35 1 1.5249 -3.0086 0.7979 36 1 1.9252 -2.6745 -2.1033 37 1 0.1937 -4.2995 -1.5837 38 1 1.3619 -5.0742 -0.4866 39 1 2.9019 -5.4510 -2.3936 40 1 1.7334 -4.6762 -3.4902 41 1 0.0382 -6.4087 -2.8319 42 1 1.0239 -6.9481 -0.6064 43 1 2.4318 -7.6749 -1.4188 44 1 -0.4735 -8.5882 -1.6430 45 1 0.8532 -9.4521 -0.8266 46 1 0.9378 -11.3211 -4.9379 47 1 2.6072 -10.7384 -4.7333 48 1 3.7204 -16.5124 -5.1023 49 1 1.2763 -9.1904 -4.9940 50 1 -0.1995 -8.4206 -4.3599 51 1 2.6802 -7.5206 -3.8817 52 1 1.4539 -6.6802 -4.8612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714250428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -64.767144 kcal Electronic energy + Delta-G solvation = -26312.745491 eV Core-core repulsion = 22629.727590 eV Total energy + Delta-G solvation = -3683.017902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.18835 -39.10361 -38.27827 -36.45512 -34.63825 -34.57477 -32.53456 -31.31648 -30.15522 -28.74811 -28.29619 -27.65316 -25.59477 -24.26292 -23.70689 -22.68447 -21.41337 -20.31698 -19.48668 -18.72745 -18.13446 -17.18602 -16.94453 -16.86646 -16.62420 -16.07102 -15.86226 -15.61543 -15.56702 -15.09778 -14.88550 -14.83269 -14.52699 -14.43343 -14.41757 -14.05408 -13.91163 -13.51576 -13.34710 -13.22341 -13.16766 -13.08891 -12.89080 -12.71976 -12.61891 -12.58311 -12.32742 -12.18550 -12.13660 -11.74897 -11.69768 -11.64676 -11.33618 -11.21079 -11.14349 -10.80213 -10.26535 -9.67245 -9.63247 -9.33038 -8.68114 -8.34634 -6.13429 1.19118 1.25671 1.42720 1.46123 1.56667 1.57537 2.13037 2.27464 2.99567 3.24231 3.28852 3.65239 3.77108 3.86738 3.93920 3.98343 4.06719 4.13892 4.24089 4.28096 4.32256 4.35218 4.41773 4.45157 4.50603 4.56283 4.62524 4.66698 4.68443 4.70637 4.85444 4.86405 4.89065 4.90634 4.93223 5.01144 5.04304 5.09768 5.10361 5.14788 5.17728 5.25721 5.33407 5.41386 5.56625 5.62544 5.75946 5.91147 6.13811 6.19604 6.31060 6.50639 7.06397 7.15034 8.74776 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.001505 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.835510 B =18603.092116 C =19022.979287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.176 4.176 5 C 0.088 3.912 6 N -0.697 5.697 7 C 0.060 3.940 8 C -0.102 4.102 9 C -0.077 4.077 10 C -0.121 4.121 11 C 0.107 3.893 12 N -0.606 5.606 13 C 0.530 3.470 14 O -0.570 6.570 15 C -0.123 4.123 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.257 1.257 25 C 0.099 3.901 26 C -0.124 4.124 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.344 0.656 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.053 0.947 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 35.367 4.384 36.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.129 4.129 3 C -0.176 4.176 4 C -0.195 4.195 5 C -0.040 4.040 6 N -0.328 5.328 7 C -0.068 4.068 8 C -0.140 4.140 9 C -0.096 4.096 10 C -0.159 4.159 11 C -0.015 4.015 12 N -0.340 5.340 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.274 4.274 16 S 0.073 5.927 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.023 4.023 26 C -0.162 4.162 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.110 0.890 51 H 0.072 0.928 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.359 34.010 6.333 35.368 hybrid contribution -0.339 0.076 -2.005 2.035 sum -7.698 34.086 4.328 35.211 Atomic orbital electron populations 1.20925 0.91723 1.03005 1.02047 1.21918 0.96437 0.95381 0.99207 1.20898 1.00094 0.94329 1.02303 1.22530 0.99804 0.93278 1.03883 1.20963 0.96025 0.92334 0.94689 1.60389 1.58351 1.05835 1.08274 1.22010 0.95425 0.90221 0.99176 1.21482 0.99729 0.94712 0.98087 1.21126 1.01024 0.93835 0.93598 1.22029 0.99846 0.94356 0.99693 1.21705 0.99914 0.94573 0.85264 1.48142 1.64728 1.11280 1.09897 1.20157 0.76226 0.82007 0.89825 1.90666 1.54902 1.62976 1.36386 1.23363 1.05094 1.00487 0.98419 1.85601 1.84824 1.08206 1.14060 1.23192 1.51113 1.02235 0.92812 0.89889 1.26138 0.94316 0.95217 1.03402 1.70194 1.43777 1.06765 1.34097 0.84944 0.78993 0.77521 0.76465 1.19294 1.20269 1.18073 1.22054 1.02342 0.92634 0.85297 1.21951 0.99608 0.95321 0.99368 0.91475 0.91142 0.91461 0.91352 0.91097 0.91461 0.87634 0.93701 0.91296 0.83756 0.94453 0.91374 0.92468 0.90770 0.89366 0.88999 0.93305 0.89615 0.91784 0.87452 0.87646 0.91991 0.89642 0.88961 0.92766 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.55 71.24 0.61 -0.36 16 2 C -0.13 -1.34 6.05 -16.49 -0.10 -1.44 16 3 C -0.12 -0.97 10.05 71.24 0.72 -0.26 16 4 C -0.18 -2.18 9.41 25.65 0.24 -1.94 16 5 C 0.09 1.08 5.88 85.56 0.50 1.58 16 6 N -0.70 -9.00 6.49 -517.95 -3.36 -12.36 16 7 C 0.06 0.71 5.44 86.30 0.47 1.18 16 8 C -0.10 -1.21 4.94 30.59 0.15 -1.06 16 9 C -0.08 -1.00 2.15 -10.66 -0.02 -1.02 16 10 C -0.12 -2.13 5.16 30.77 0.16 -1.97 16 11 C 0.11 2.52 6.42 86.36 0.55 3.08 16 12 N -0.61 -16.87 2.97 -818.93 -2.43 -19.30 16 13 C 0.53 20.90 7.72 87.66 0.68 21.58 16 14 O -0.57 -27.86 15.27 -3.05 -0.05 -27.91 16 15 C -0.12 -5.06 4.50 71.24 0.32 -4.74 16 16 S -0.15 -8.77 20.57 -56.49 -1.16 -9.94 16 17 C -0.55 -31.51 9.50 67.95 0.65 -30.86 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.59 13.22 21.65 0.29 -56.31 16 21 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 C 0.10 1.89 6.34 86.36 0.55 2.44 16 26 C -0.12 -1.85 5.36 30.67 0.16 -1.68 16 27 H 0.07 0.53 7.84 -2.39 -0.02 0.51 16 28 H 0.07 0.44 7.71 -2.39 -0.02 0.42 16 29 H 0.07 0.51 7.67 -2.39 -0.02 0.50 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.44 7.71 -2.39 -0.02 0.42 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.11 1.46 8.05 -2.91 -0.02 1.44 16 34 H 0.04 0.48 5.88 -2.39 -0.01 0.46 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.34 3.89 8.72 -89.69 -0.78 3.11 16 37 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.07 0.90 6.54 -2.39 -0.02 0.89 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.30 6.52 -2.39 -0.02 1.29 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.06 1.89 7.00 -2.39 -0.02 1.88 16 46 H 0.11 4.00 7.94 -2.39 -0.02 3.98 16 47 H 0.11 3.97 7.69 -2.40 -0.02 3.95 16 48 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 49 H 0.09 1.73 5.93 -2.39 -0.01 1.71 16 50 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.68 421.40 1.51 -75.17 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.10 Total: 19.08 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 6.10 Total: -14.23 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -5.51 Total: -87.97 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -76.68 1.51 -75.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714250428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.398 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds