Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47032 * 2 1 4 4 C 1.52995 * 109.46997 * 120.00210 * 2 1 3 5 5 C 1.52999 * 109.46997 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47101 * 299.99926 * 5 4 2 7 7 C 1.52999 * 109.47101 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47151 * 65.32526 * 7 6 5 9 9 C 1.47961 * 110.99825 * 175.29610 * 8 7 6 10 10 C 1.53935 * 86.17900 * 222.41261 * 9 8 7 11 11 N 1.46497 * 113.73807 * 269.26059 * 10 9 8 12 12 C 1.34776 * 119.99805 * 203.10252 * 11 10 9 13 13 O 1.21276 * 120.00380 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99578 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.46902 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00134 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99827 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00263 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99783 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00167 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47074 * 59.99954 * 20 18 16 22 22 H 1.48499 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47239 * 299.99837 * 20 18 16 24 24 C 1.47954 * 111.00359 * 75.93391 * 8 7 6 25 25 C 1.52995 * 109.47135 * 60.00158 * 6 5 4 26 26 C 1.52999 * 109.47101 * 240.00137 * 2 1 3 27 27 H 1.09000 * 109.47503 * 300.00244 * 1 2 3 28 28 H 1.09007 * 109.47411 * 59.99531 * 1 2 3 29 29 H 1.09001 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47127 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47677 * 300.00303 * 3 2 1 32 32 H 1.09002 * 109.47250 * 60.00087 * 3 2 1 33 33 H 1.09001 * 109.47335 * 59.99732 * 4 2 1 34 34 H 1.09002 * 109.47020 * 299.99750 * 4 2 1 35 35 H 1.09007 * 109.47165 * 179.97438 * 5 4 2 36 36 H 1.09006 * 109.46953 * 60.00020 * 5 4 2 37 37 H 1.09001 * 109.46867 * 300.00045 * 6 5 4 38 38 H 1.08996 * 109.47403 * 305.32621 * 7 6 5 39 39 H 1.08997 * 109.47544 * 185.32249 * 7 6 5 40 40 H 1.09000 * 113.75547 * 108.10308 * 9 8 7 41 41 H 1.08991 * 113.76341 * 336.73260 * 9 8 7 42 42 H 1.08995 * 113.73243 * 138.07692 * 10 9 8 43 43 H 0.96997 * 120.00250 * 23.09498 * 11 10 9 44 44 H 1.08999 * 109.47234 * 299.99483 * 14 12 11 45 45 H 1.09000 * 109.47014 * 60.00524 * 14 12 11 46 46 H 0.97003 * 120.00061 * 180.02562 * 19 18 16 47 47 H 1.09007 * 113.75763 * 23.26575 * 24 8 7 48 48 H 1.09000 * 113.76340 * 251.90435 * 24 8 7 49 49 H 1.09001 * 109.47335 * 60.00173 * 25 6 5 50 50 H 1.09002 * 109.47020 * 180.02562 * 25 6 5 51 51 H 1.09001 * 109.46867 * 300.00045 * 26 2 1 52 52 H 1.09007 * 109.47242 * 59.99886 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5699 -0.7218 1.2489 6 6 4.0794 -1.4434 -0.0004 7 6 5.6094 -1.4445 -0.0004 8 7 6.0985 -2.2458 1.1296 9 6 7.5731 -2.3630 1.0975 10 6 7.3608 -3.8415 1.4696 11 7 7.3503 -4.0907 2.9132 12 6 7.6400 -5.3186 3.3872 13 8 7.9090 -6.2174 2.6187 14 6 7.6297 -5.5748 4.8723 15 16 8.0552 -7.3053 5.1889 16 6 7.9696 -7.3244 6.9487 17 1 7.7118 -6.4241 7.4866 18 6 8.2337 -8.4965 7.6437 19 7 8.5475 -9.5939 6.9881 20 14 8.1437 -8.5165 9.5095 21 1 6.7733 -8.1433 9.9429 22 1 8.4657 -9.8785 10.0060 23 1 9.1199 -7.5438 10.0626 24 6 5.9577 -3.6926 0.8541 25 6 3.5694 -0.7221 -1.2496 26 6 2.0400 -0.7212 -1.2492 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 1.2492 34 1 1.6766 -0.2074 2.1392 35 1 3.9333 -1.2353 2.1391 36 1 3.9336 0.3058 1.2487 37 1 3.7157 -2.4709 -0.0001 38 1 5.9735 -0.4216 0.0950 39 1 5.9725 -1.8738 -0.9342 40 1 8.0766 -1.7834 1.8713 41 1 8.0039 -2.2169 0.1071 42 1 8.0082 -4.5283 0.9246 43 1 7.1349 -3.3719 3.5279 44 1 8.3589 -4.9263 5.3579 45 1 6.6365 -5.3666 5.2700 46 1 8.7316 -10.4131 7.4738 47 1 5.9160 -3.9354 -0.2078 48 1 5.1705 -4.1754 1.4332 49 1 3.9332 0.3054 -1.2498 50 1 3.9320 -1.2365 -2.1396 51 1 1.6766 -1.7489 -1.2492 52 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714929677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -34.129403 kcal Electronic energy + Delta-G solvation = -27232.586601 eV Core-core repulsion = 23550.897251 eV Total energy + Delta-G solvation = -3681.689350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.75403 -39.71418 -38.40650 -34.81510 -33.20331 -32.41228 -31.09586 -30.07737 -28.62999 -27.68572 -26.47517 -26.06506 -25.43917 -23.28710 -22.88253 -20.81338 -20.69506 -19.64810 -18.73919 -17.83240 -16.63725 -16.29944 -15.90166 -15.60939 -15.17632 -15.09004 -14.93910 -14.78836 -14.55062 -14.30992 -14.09532 -13.53852 -13.44200 -13.26083 -13.09992 -12.91660 -12.58604 -12.54554 -12.23459 -12.17613 -12.10660 -12.05392 -11.60781 -11.58612 -11.35261 -11.19840 -11.09474 -11.02945 -11.02320 -10.89812 -10.73983 -10.41473 -10.28937 -10.15281 -9.80664 -9.40817 -9.06836 -9.03908 -8.83139 -8.22516 -6.48358 -6.20029 -3.90520 3.01052 3.06516 3.24892 3.28402 3.31514 3.59516 3.80221 4.21691 4.22257 4.30168 4.40899 4.44008 4.61301 4.65822 4.79682 4.87359 5.05763 5.08695 5.11438 5.13668 5.15005 5.15996 5.23841 5.26045 5.28149 5.34534 5.37541 5.38511 5.48256 5.48987 5.56155 5.59381 5.63052 5.67138 5.69436 5.73075 5.78908 5.88158 5.89312 5.90533 5.92281 6.03093 6.06853 6.12334 6.16981 6.22740 6.31250 6.67309 6.79269 7.61016 7.76000 8.36726 8.62741 9.25181 10.87317 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.001866 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.620374 B =14999.020313 C =15988.759300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.079 4.079 7 C 0.025 3.975 8 N -0.474 5.474 9 C -0.006 4.006 10 C 0.123 3.877 11 N -0.714 5.714 12 C 0.534 3.466 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.011 4.011 25 C -0.116 4.116 26 C -0.106 4.106 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.403 0.597 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.061 0.939 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 23.636 -17.117 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.201 4.201 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.098 4.098 7 C -0.104 4.104 8 N -0.196 5.196 9 C -0.136 4.136 10 C 0.015 3.985 11 N -0.367 5.367 12 C 0.321 3.679 13 O -0.393 6.393 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.238 0.762 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.509 22.234 -17.822 30.732 hybrid contribution -0.225 1.159 1.506 1.914 sum -11.734 23.393 -16.316 30.841 Atomic orbital electron populations 1.21876 0.94887 1.01679 1.01522 1.20542 0.94969 0.95542 0.95535 1.21961 1.01521 0.95298 1.01286 1.21614 0.96116 1.00220 0.96745 1.21507 0.94470 1.00341 0.98076 1.21070 0.93581 0.99963 0.95157 1.22706 0.95951 0.99086 0.92649 1.68547 1.07728 1.05600 1.37760 1.24339 0.91004 0.96291 1.01944 1.22138 0.96749 0.96250 0.83319 1.45607 1.72561 1.12463 1.06058 1.20356 0.75270 0.81639 0.90654 1.90695 1.46519 1.43168 1.58872 1.23525 1.05238 1.07821 0.93741 1.85380 1.90440 1.00161 1.07365 1.22829 1.54944 0.99257 0.91352 0.90961 1.24991 0.94547 0.94614 0.99446 1.70009 1.43753 1.00475 1.36081 0.86224 0.78740 0.77405 0.83132 1.19940 1.20833 1.19939 1.24480 0.99412 0.89831 1.00348 1.21599 0.95670 1.00765 0.97349 1.21549 0.95354 1.00383 0.97060 0.92747 0.92893 0.92734 0.91968 0.93098 0.92932 0.92146 0.92183 0.90812 0.92193 0.91269 0.90860 0.94210 0.88811 0.90302 0.87898 0.76173 0.89177 0.89144 0.92149 0.90670 0.88940 0.91704 0.92349 0.92069 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.47 37.16 0.31 -0.57 16 2 C -0.07 -0.43 0.77 -154.51 -0.12 -0.55 16 3 C -0.14 -0.88 7.78 37.16 0.29 -0.59 16 4 C -0.11 -0.82 4.73 -26.73 -0.13 -0.94 16 5 C -0.11 -0.83 4.82 -26.73 -0.13 -0.96 16 6 C -0.08 -0.59 2.25 -90.62 -0.20 -0.79 16 7 C 0.02 0.19 4.13 -3.82 -0.02 0.17 16 8 N -0.47 -4.26 5.69 -238.46 -1.36 -5.61 16 9 C -0.01 -0.05 7.73 -2.77 -0.02 -0.08 16 10 C 0.12 1.42 4.40 -69.63 -0.31 1.11 16 11 N -0.71 -9.60 5.38 -54.95 -0.30 -9.89 16 12 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 13 O -0.52 -11.66 15.48 5.56 0.09 -11.57 16 14 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 20 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.01 -0.11 7.10 -2.77 -0.02 -0.13 16 25 C -0.12 -0.75 4.93 -26.76 -0.13 -0.88 16 26 C -0.11 -0.68 4.73 -26.76 -0.13 -0.81 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 4.81 -51.93 -0.25 0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.69 7.76 -51.92 -0.40 0.29 16 36 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 37 H 0.07 0.61 7.62 -51.93 -0.40 0.21 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.29 7.68 -51.93 -0.40 -0.11 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 42 H 0.10 1.35 7.51 -51.93 -0.39 0.96 16 43 H 0.40 4.56 8.74 -40.82 -0.36 4.20 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.08 0.69 7.69 -51.92 -0.40 0.29 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 412.84 15.07 6.22 6.22 Total: -1.00 -32.69 412.84 -11.66 -44.35 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -9.56 Total: 0.45 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.26 Total: -11.05 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.92 Total: -41.00 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.69 -11.66 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714929677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.225 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds