Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50694 * 120.00186 * 2 1 4 4 C 1.31004 * 119.99677 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00257 * 353.78117 * 4 2 1 6 6 N 1.46898 * 109.47600 * 235.80083 * 5 4 2 7 7 C 1.46847 * 111.00015 * 45.78464 * 6 5 4 8 8 C 1.53037 * 109.52268 * 185.84035 * 7 6 5 9 9 C 1.53116 * 109.27778 * 300.82510 * 8 7 6 10 10 C 1.53005 * 109.57246 * 177.58741 * 9 8 7 11 11 C 1.53010 * 109.46812 * 65.28624 * 10 9 8 12 12 N 1.46501 * 109.46905 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99939 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99980 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00228 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47501 * 180.02562 * 15 13 12 17 17 C 1.76191 * 100.00171 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00283 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00200 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00247 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99791 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47277 * 89.99855 * 21 19 17 23 23 H 1.48503 * 109.47391 * 209.99860 * 21 19 17 24 24 H 1.48505 * 109.47420 * 330.00055 * 21 19 17 25 25 C 1.53116 * 109.16238 * 57.65427 * 9 8 7 26 26 C 1.46840 * 110.99917 * 170.00094 * 6 5 4 27 27 H 1.09003 * 109.46803 * 265.02431 * 1 2 3 28 28 H 1.09001 * 109.47114 * 25.01961 * 1 2 3 29 29 H 1.08990 * 109.47599 * 145.02102 * 1 2 3 30 30 H 1.09001 * 109.47314 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47302 * 299.99922 * 3 2 1 32 32 H 1.09003 * 109.47134 * 60.00686 * 3 2 1 33 33 H 1.08004 * 119.99760 * 173.78664 * 4 2 1 34 34 H 1.09005 * 109.46919 * 355.80195 * 5 4 2 35 35 H 1.09002 * 109.47050 * 115.79469 * 5 4 2 36 36 H 1.09000 * 109.46662 * 305.86176 * 7 6 5 37 37 H 1.09003 * 109.45880 * 65.83133 * 7 6 5 38 38 H 1.09000 * 109.50500 * 180.88133 * 8 7 6 39 39 H 1.09002 * 109.50162 * 60.76660 * 8 7 6 40 40 H 1.08994 * 109.52530 * 297.74736 * 9 8 7 41 41 H 1.08996 * 109.47242 * 185.28251 * 10 9 8 42 42 H 1.08996 * 109.47409 * 305.28648 * 10 9 8 43 43 H 1.08996 * 109.46913 * 299.99829 * 11 10 9 44 44 H 1.08996 * 109.47114 * 59.99843 * 11 10 9 45 45 H 0.97003 * 120.00052 * 0.02562 * 12 11 10 46 46 H 1.09005 * 109.47357 * 299.99959 * 15 13 12 47 47 H 1.09006 * 109.47158 * 60.00086 * 15 13 12 48 48 H 0.97000 * 119.99973 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.50566 * 182.39763 * 25 9 8 50 50 H 1.09005 * 109.53444 * 62.30799 * 25 9 8 51 51 H 1.08994 * 109.46587 * 294.16744 * 26 6 5 52 52 H 1.09002 * 109.46887 * 54.15424 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1346 -0.0005 5 6 1.4151 -2.4359 0.1403 6 7 1.9520 -3.1876 1.2824 7 6 2.1205 -2.3171 2.4530 8 6 2.8143 -3.0953 3.5733 9 6 1.9672 -4.3169 3.9400 10 6 2.6838 -5.1328 5.0179 11 6 2.7732 -4.3102 6.3050 12 7 3.4589 -5.0916 7.3372 13 6 3.6539 -4.5653 8.5625 14 8 3.2614 -3.4450 8.8107 15 6 4.3597 -5.3688 9.6241 16 16 4.4653 -4.3959 11.1468 17 6 5.3100 -5.5423 12.1844 18 1 5.5922 -6.5117 11.8008 19 6 5.6129 -5.1997 13.4949 20 7 6.2444 -6.0560 14.2700 21 14 5.1255 -3.5229 14.1583 22 1 3.7679 -3.6020 14.7548 23 1 6.0986 -3.0995 15.1971 24 1 5.1224 -2.5340 13.0505 25 6 1.7661 -5.1818 2.6927 26 6 1.1027 -4.3432 1.5979 27 1 -0.3633 -0.0891 1.0238 28 1 -0.3633 0.9312 -0.4346 29 1 -0.3634 -0.8419 -0.5891 30 1 3.3322 1.1058 -0.0005 31 1 1.9972 1.8766 -0.8900 32 1 1.9973 1.8766 0.8901 33 1 3.2372 -1.1373 -0.1017 34 1 0.3571 -2.2316 0.3048 35 1 1.5344 -3.0236 -0.7700 36 1 2.7282 -1.4545 2.1797 37 1 1.1433 -1.9784 2.7974 38 1 2.9252 -2.4536 4.4475 39 1 3.7973 -3.4225 3.2344 40 1 0.9981 -3.9886 4.3157 41 1 2.1263 -6.0493 5.2105 42 1 3.6881 -5.3833 4.6763 43 1 3.3307 -3.3936 6.1124 44 1 1.7689 -4.0597 6.6466 45 1 3.7731 -5.9876 7.1386 46 1 3.8020 -6.2853 9.8170 47 1 5.3639 -5.6197 9.2824 48 1 6.4557 -5.8166 15.1860 49 1 1.1282 -6.0310 2.9376 50 1 2.7323 -5.5425 2.3397 51 1 0.1304 -3.9951 1.9463 52 1 0.9712 -4.9524 0.7035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715200183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = -66.457648 kcal Electronic energy + Delta-G solvation = -26422.914711 eV Core-core repulsion = 22739.823503 eV Total energy + Delta-G solvation = -3683.091207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.77668 -40.26369 -37.94962 -36.43790 -34.72605 -34.65516 -32.00224 -31.67083 -30.35653 -28.83128 -28.43264 -27.83875 -25.61164 -24.47551 -23.34775 -22.12190 -21.72744 -20.57517 -19.85612 -18.75397 -17.84183 -17.39774 -17.10587 -16.93002 -16.82377 -16.16005 -15.88797 -15.70638 -15.64636 -15.11221 -15.01758 -14.89921 -14.78847 -14.62013 -14.48067 -14.13096 -13.62718 -13.51676 -13.34659 -13.25410 -13.22014 -13.02175 -12.93411 -12.82388 -12.72854 -12.60064 -12.38437 -12.16809 -12.06185 -11.87302 -11.79447 -11.53816 -11.28686 -11.17205 -11.09004 -10.92075 -10.53653 -10.10475 -9.63045 -9.21099 -8.99831 -8.51622 -6.22509 0.99330 1.18067 1.31230 1.46985 1.56356 1.57162 2.23466 2.28166 2.72403 2.86616 3.04488 3.71582 3.80032 3.83441 3.86360 3.94253 4.04689 4.20557 4.22940 4.26941 4.31470 4.40567 4.45584 4.47473 4.51028 4.53080 4.61707 4.63222 4.67707 4.71218 4.78072 4.83185 4.90674 4.94756 4.97176 4.99467 5.04837 5.06667 5.08434 5.16907 5.19985 5.26961 5.33182 5.45562 5.54528 5.70645 5.72206 5.89720 6.11242 6.20276 6.22171 6.49220 6.93625 7.21006 8.60716 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.001611 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.989856 B =17380.395402 C =18375.225409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.133 4.133 3 C -0.118 4.118 4 C -0.170 4.170 5 C 0.082 3.918 6 N -0.540 5.540 7 C 0.062 3.938 8 C -0.114 4.114 9 C -0.080 4.080 10 C -0.112 4.112 11 C 0.119 3.881 12 N -0.712 5.712 13 C 0.532 3.468 14 O -0.566 6.566 15 C -0.111 4.111 16 S -0.178 6.178 17 C -0.530 4.530 18 H 0.063 0.937 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.238 1.238 25 C -0.105 4.105 26 C 0.054 3.946 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.023 0.977 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.417 0.583 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.277 0.723 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.030 0.970 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.158 5.948 -35.044 37.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.134 4.134 3 C -0.175 4.175 4 C -0.188 4.188 5 C -0.045 4.045 6 N -0.265 5.265 7 C -0.065 4.065 8 C -0.152 4.152 9 C -0.100 4.100 10 C -0.149 4.149 11 C -0.004 4.004 12 N -0.366 5.366 13 C 0.318 3.682 14 O -0.445 6.445 15 C -0.262 4.262 16 S 0.049 5.951 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.142 4.142 26 C -0.073 4.073 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.254 0.746 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.090 0.910 51 H 0.048 0.952 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.275 7.553 -34.625 37.505 hybrid contribution -0.006 -0.942 0.708 1.178 sum -12.281 6.611 -33.917 36.673 Atomic orbital electron populations 1.20877 0.91945 1.02968 1.01936 1.21858 0.96354 0.95422 0.99805 1.20867 0.99441 0.94670 1.02526 1.22553 0.99754 0.93262 1.03246 1.21212 0.96278 0.92768 0.94245 1.62024 1.49747 1.09042 1.05718 1.22002 0.98720 0.95487 0.90340 1.21705 0.99524 0.96789 0.97176 1.21083 0.98653 0.95314 0.94914 1.21746 1.02511 0.98664 0.92024 1.21488 0.96534 0.95072 0.87319 1.45779 1.59972 1.20332 1.10484 1.19985 0.78595 0.86190 0.83448 1.90684 1.51639 1.21025 1.81114 1.23280 1.04944 1.02445 0.95552 1.84719 1.76739 1.25563 1.08116 1.22466 1.42734 1.02817 0.99711 0.91918 1.25555 0.93506 1.00877 0.95977 1.70016 1.39918 1.37121 1.08373 0.85872 0.79394 0.80703 0.80430 1.18686 1.18281 1.16146 1.21586 1.01856 0.97484 0.93299 1.22133 0.93687 0.92215 0.99282 0.92039 0.91059 0.91252 0.92046 0.90943 0.91267 0.87369 0.93701 0.89951 0.90883 0.95894 0.91973 0.91245 0.91612 0.89675 0.90086 0.92400 0.92756 0.74565 0.86780 0.86773 0.91364 0.90065 0.91007 0.95211 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.94 71.24 0.64 -0.55 16 2 C -0.13 -1.58 6.05 -16.49 -0.10 -1.68 16 3 C -0.12 -1.19 10.09 71.23 0.72 -0.47 16 4 C -0.17 -2.20 7.13 25.64 0.18 -2.01 16 5 C 0.08 1.01 5.35 85.56 0.46 1.47 16 6 N -0.54 -7.53 4.80 -900.94 -4.32 -11.85 16 7 C 0.06 0.95 5.08 86.33 0.44 1.39 16 8 C -0.11 -1.71 5.08 30.65 0.16 -1.56 16 9 C -0.08 -1.03 2.25 -10.71 -0.02 -1.05 16 10 C -0.11 -1.41 4.80 30.60 0.15 -1.27 16 11 C 0.12 2.42 5.44 86.38 0.47 2.89 16 12 N -0.71 -16.55 5.56 -463.07 -2.57 -19.12 16 13 C 0.53 18.40 7.85 87.66 0.69 19.09 16 14 O -0.57 -24.57 15.86 -3.02 -0.05 -24.61 16 15 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 16 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 17 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 18 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 19 C 0.05 2.73 5.50 84.86 0.47 3.20 16 20 N -0.92 -55.92 13.97 21.65 0.30 -55.62 16 21 Si 0.91 45.24 27.74 68.60 1.90 47.15 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 25 C -0.10 -1.11 5.38 30.65 0.16 -0.94 16 26 C 0.05 0.63 5.42 86.33 0.47 1.10 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 29 H 0.07 0.62 6.66 -2.39 -0.02 0.61 16 30 H 0.06 0.62 7.79 -2.39 -0.02 0.60 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 1.51 7.85 -2.91 -0.02 1.48 16 34 H 0.04 0.53 5.65 -2.38 -0.01 0.52 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.18 6.49 -2.39 -0.02 1.17 16 37 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.06 1.04 6.71 -2.39 -0.02 1.03 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.33 6.64 -2.39 -0.02 1.31 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.42 6.81 8.47 -92.71 -0.79 6.03 16 46 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 47 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 48 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 49 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 52 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 Total: -1.00 -72.71 418.92 0.26 -72.45 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.06 Total: 16.19 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 5.99 Total: -14.47 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -6.59 Total: -86.59 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -72.71 0.26 -72.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715200183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.990 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds