Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00054 * 2 1 4 4 O 1.21589 * 120.00126 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00154 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99934 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46950 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47306 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99951 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00447 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00314 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47221 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.26672 * 304.38886 * 12 11 10 14 14 C 1.55009 * 110.38321 * 182.25577 * 12 11 10 15 15 C 1.55490 * 101.04501 * 205.00364 * 14 12 11 16 16 C 1.53657 * 101.96420 * 33.49328 * 15 14 12 17 17 C 1.52705 * 115.26215 * 206.89475 * 16 15 14 18 18 N 1.47212 * 87.79693 * 219.25385 * 17 16 15 19 19 C 1.36929 * 135.97518 * 206.43586 * 18 17 16 20 20 H 1.08006 * 119.99870 * 7.80496 * 19 18 17 21 21 C 1.38816 * 120.00238 * 187.80695 * 19 18 17 22 22 N 1.31616 * 120.00032 * 195.32356 * 21 19 18 23 23 Si 1.86794 * 119.99806 * 15.32126 * 21 19 18 24 24 H 1.48495 * 109.47368 * 270.00233 * 23 21 19 25 25 H 1.48506 * 109.47153 * 149.99889 * 23 21 19 26 26 H 1.48502 * 109.47004 * 30.00348 * 23 21 19 27 27 C 1.47216 * 88.05142 * 26.69135 * 18 17 16 28 28 O 1.42396 * 108.53566 * 339.12487 * 16 15 14 29 29 H 1.09003 * 109.47173 * 299.99906 * 1 2 3 30 30 H 1.08996 * 109.47525 * 59.99617 * 1 2 3 31 31 H 1.08995 * 109.47073 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00329 * 180.02562 * 2 1 3 33 33 H 0.97005 * 119.99853 * 0.02562 * 5 3 2 34 34 H 1.09008 * 109.46706 * 60.00501 * 6 5 3 35 35 H 1.08997 * 109.47450 * 300.00168 * 6 5 3 36 36 H 1.08998 * 109.46899 * 60.00197 * 7 6 5 37 37 H 1.08997 * 109.47286 * 300.00396 * 7 6 5 38 38 H 0.97005 * 119.99695 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.47325 * 59.99761 * 11 10 8 40 40 H 1.08997 * 109.47061 * 299.99837 * 11 10 8 41 41 H 1.09003 * 111.10909 * 322.95076 * 14 12 11 42 42 H 1.09008 * 111.10406 * 87.02227 * 14 12 11 43 43 H 1.08999 * 110.93127 * 275.31901 * 15 14 12 44 44 H 1.09003 * 110.92673 * 151.65717 * 15 14 12 45 45 H 1.08999 * 113.49670 * 104.52193 * 17 16 15 46 46 H 1.08996 * 113.55763 * 333.99926 * 17 16 15 47 47 H 0.97000 * 120.00221 * 354.91228 * 22 21 19 48 48 H 1.08997 * 113.49376 * 88.03980 * 27 18 17 49 49 H 1.08999 * 113.50076 * 218.57489 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4360 -0.0011 7 6 5.7234 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0009 9 8 5.8705 4.5118 -0.0005 10 7 7.8246 3.4615 -0.0013 11 6 8.5571 4.7303 -0.0007 12 6 10.0614 4.4507 -0.0007 13 1 10.3270 3.8135 0.8428 14 6 10.8575 5.7795 0.0571 15 6 12.2019 5.3499 -0.5955 16 6 11.7375 4.3089 -1.6258 17 6 12.7712 3.2452 -1.9888 18 7 12.3034 3.3468 -3.3809 19 6 12.2711 2.5197 -4.4717 20 1 12.5451 1.4800 -4.3692 21 6 11.8863 3.0173 -5.7091 22 7 11.5633 2.1894 -6.6799 23 14 11.8269 4.8621 -5.9964 24 1 10.4772 5.3741 -5.6483 25 1 12.1124 5.1500 -7.4250 26 1 12.8441 5.5287 -5.1443 27 6 11.8913 4.7296 -3.0886 28 8 10.4538 3.8298 -1.2383 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 3.9717 0.3271 -0.0013 34 1 3.9561 3.0077 0.8890 35 1 3.9555 3.0074 -0.8910 36 1 5.9866 1.5845 -0.8907 37 1 5.9867 1.5852 0.8892 38 1 8.3096 2.6214 -0.0013 39 1 8.2940 5.3013 0.8897 40 1 8.2935 5.3024 -0.8902 41 1 10.3672 6.5567 -0.5292 42 1 11.0063 6.1033 1.0873 43 1 12.8660 4.8989 0.1418 44 1 12.6840 6.1954 -1.0863 45 1 12.5741 2.2745 -1.5339 46 1 13.8013 3.5740 -1.8514 47 1 11.6645 1.2327 -6.5552 48 1 12.6825 5.4619 -3.2492 49 1 10.9513 5.0124 -3.5623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717223327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -45.204554 kcal Electronic energy + Delta-G solvation = -29399.122107 eV Core-core repulsion = 25170.659289 eV Total energy + Delta-G solvation = -4228.462819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41172 -40.19102 -39.56764 -36.96027 -35.62912 -34.74972 -34.57343 -32.37425 -32.12608 -31.37567 -29.51463 -27.34769 -26.67184 -25.43336 -24.34980 -23.07920 -21.58130 -21.26987 -21.10111 -20.38434 -19.33147 -18.93666 -17.49886 -17.29822 -16.79791 -16.49805 -16.29723 -15.92612 -15.65984 -15.49345 -14.73624 -14.54841 -14.40735 -14.32192 -13.91108 -13.73979 -13.67384 -13.37480 -13.17649 -13.13495 -13.07201 -12.57478 -12.49922 -12.20386 -12.16571 -11.71778 -11.68732 -11.63864 -11.33252 -10.83813 -10.72972 -10.53842 -10.34228 -10.20288 -9.97997 -9.85439 -9.61177 -9.24744 -9.19190 -9.11124 -8.85241 -8.69113 -7.16069 -6.27978 -3.18708 2.33334 2.52202 2.96060 3.08912 3.43592 3.47997 3.63331 3.74414 3.97838 4.42727 4.44488 4.62159 4.64330 4.74178 4.77025 4.77497 4.84319 4.88102 4.94689 5.09320 5.15793 5.20061 5.33638 5.43577 5.45311 5.47403 5.54404 5.64460 5.69279 5.75301 5.87246 5.91197 6.04336 6.09425 6.16119 6.16763 6.24124 6.30252 6.34063 6.41953 6.50500 6.55910 7.14432 7.37394 7.45299 7.68462 8.09883 8.25720 8.32626 8.99777 9.53635 10.39674 11.22278 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.002246 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.532168 B =12461.763861 C =14015.667109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.702 3.298 4 O -0.586 6.586 5 N -0.747 5.747 6 C 0.154 3.846 7 C -0.154 4.154 8 C 0.518 3.482 9 O -0.540 6.540 10 N -0.721 5.721 11 C 0.123 3.877 12 C 0.062 3.938 13 H 0.075 0.925 14 C -0.146 4.146 15 C -0.137 4.137 16 C 0.071 3.929 17 C 0.113 3.887 18 N -0.617 5.617 19 C -0.300 4.300 20 H 0.081 0.919 21 C -0.024 4.024 22 N -0.933 5.933 23 Si 1.062 2.938 24 H -0.293 1.293 25 H -0.295 1.295 26 H -0.283 1.283 27 C 0.097 3.903 28 O -0.332 6.332 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.397 0.603 33 H 0.396 0.604 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.260 0.740 48 H 0.055 0.945 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 -2.448 20.665 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.401 3.599 4 O -0.463 6.463 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.195 4.195 8 C 0.304 3.696 9 O -0.417 6.417 10 N -0.373 5.373 11 C -0.001 4.001 12 C 0.004 3.996 13 H 0.093 0.907 14 C -0.184 4.184 15 C -0.176 4.176 16 C 0.030 3.970 17 C -0.014 4.014 18 N -0.344 5.344 19 C -0.427 4.427 20 H 0.098 0.902 21 C -0.223 4.223 22 N -0.575 5.575 23 Si 0.893 3.107 24 H -0.221 1.221 25 H -0.223 1.223 26 H -0.210 1.210 27 C -0.029 4.029 28 O -0.250 6.250 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.229 0.771 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.241 0.759 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.295 0.146 19.199 22.799 hybrid contribution 1.462 -2.390 1.098 3.009 sum -10.834 -2.244 20.297 23.116 Atomic orbital electron populations 1.21392 0.78095 1.01937 1.02370 1.44917 1.07828 1.07104 1.81007 1.15935 0.81699 0.84318 0.77952 1.90963 1.67799 1.30305 1.57283 1.45087 1.04801 1.09822 1.80624 1.20876 0.87912 0.84167 1.04120 1.21799 0.95366 0.96928 1.05392 1.20251 0.82340 0.90909 0.76120 1.90748 1.68090 1.33463 1.49436 1.45874 1.06131 1.10141 1.75119 1.21553 0.89323 0.86170 1.03019 1.23300 0.93203 0.94215 0.88863 0.90690 1.23223 0.95977 0.97196 1.02020 1.22906 0.97197 0.99254 0.98242 1.23167 0.84639 0.94607 0.94610 1.22661 0.94565 0.96990 0.87174 1.46045 1.69931 1.09781 1.08660 1.20078 1.45497 0.91194 0.85901 0.90171 1.25746 0.98378 1.06890 0.91306 1.70900 1.47449 1.03895 1.35260 0.83777 0.76349 0.75376 0.75151 1.22055 1.22271 1.20954 1.23027 0.98569 0.89745 0.91522 1.88442 1.33471 1.65256 1.37862 0.92380 0.92316 0.90670 0.76981 0.77055 0.90634 0.90476 0.87781 0.88195 0.75899 0.90266 0.90463 0.89890 0.89903 0.90283 0.89646 0.93235 0.93691 0.92928 0.92757 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.67 10.70 59.84 0.64 1.31 16 2 N -0.75 -5.38 5.72 -72.07 -0.41 -5.80 16 3 C 0.70 7.80 8.57 -86.91 -0.74 7.06 16 4 O -0.59 -9.44 16.34 5.29 0.09 -9.36 16 5 N -0.75 -6.33 5.56 -65.22 -0.36 -6.69 16 6 C 0.15 1.61 4.96 -4.04 -0.02 1.59 16 7 C -0.15 -1.25 5.81 -27.88 -0.16 -1.41 16 8 C 0.52 6.23 7.83 -10.99 -0.09 6.14 16 9 O -0.54 -8.66 15.98 5.55 0.09 -8.57 16 10 N -0.72 -8.00 5.54 -60.29 -0.33 -8.34 16 11 C 0.12 1.44 5.39 -4.04 -0.02 1.42 16 12 C 0.06 0.72 3.48 -25.67 -0.09 0.63 16 13 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 14 C -0.15 -1.47 6.58 -24.35 -0.16 -1.63 16 15 C -0.14 -1.63 6.39 -25.07 -0.16 -1.79 16 16 C 0.07 1.20 1.75 -90.45 -0.16 1.05 16 17 C 0.11 2.19 8.20 -8.07 -0.07 2.13 16 18 N -0.62 -15.36 3.63 -184.59 -0.67 -16.03 16 19 C -0.30 -8.79 11.03 -15.06 -0.17 -8.96 16 20 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 21 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 22 N -0.93 -29.88 13.70 55.49 0.76 -29.12 16 23 Si 1.06 27.17 25.51 -169.99 -4.34 22.83 16 24 H -0.29 -7.32 6.97 56.52 0.39 -6.93 16 25 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 26 H -0.28 -6.60 5.65 56.52 0.32 -6.29 16 27 C 0.10 2.06 5.09 -7.93 -0.04 2.02 16 28 O -0.33 -5.59 10.84 -35.23 -0.38 -5.97 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.40 1.49 8.84 -40.82 -0.36 1.13 16 33 H 0.40 1.93 8.49 -40.82 -0.35 1.58 16 34 H 0.08 0.91 8.10 -51.92 -0.42 0.49 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.41 3.86 8.47 -40.82 -0.35 3.51 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 42 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 44 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 47 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 48 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16 49 H 0.06 1.31 6.28 -51.93 -0.33 0.98 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -40.74 399.23 -9.01 -49.75 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.13 Total: 2.57 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.33 Total: 8.72 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.02 Total: -65.98 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.21 Total: -23.90 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.34 Total: 22.83 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -40.74 -9.01 -49.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717223327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.545 kcal (2) G-P(sol) polarization free energy of solvation -40.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds