Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00054 * 2 1 4 4 O 1.21589 * 120.00126 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00154 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99934 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46950 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47306 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99951 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00447 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00314 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47221 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.26672 * 304.38886 * 12 11 10 14 14 C 1.55009 * 110.38321 * 182.25577 * 12 11 10 15 15 C 1.55490 * 101.04501 * 205.00364 * 14 12 11 16 16 C 1.53657 * 101.96420 * 33.49328 * 15 14 12 17 17 C 1.52705 * 115.26215 * 206.89475 * 16 15 14 18 18 N 1.47212 * 87.79693 * 219.25385 * 17 16 15 19 19 C 1.36929 * 135.97518 * 206.43586 * 18 17 16 20 20 H 1.08006 * 119.99870 * 7.80496 * 19 18 17 21 21 C 1.38816 * 120.00238 * 187.80695 * 19 18 17 22 22 N 1.31616 * 120.00032 * 195.32356 * 21 19 18 23 23 Si 1.86794 * 119.99806 * 15.32126 * 21 19 18 24 24 H 1.48495 * 109.47368 * 270.00233 * 23 21 19 25 25 H 1.48506 * 109.47153 * 149.99889 * 23 21 19 26 26 H 1.48502 * 109.47004 * 30.00348 * 23 21 19 27 27 C 1.47216 * 88.05142 * 26.69135 * 18 17 16 28 28 O 1.42396 * 108.53566 * 339.12487 * 16 15 14 29 29 H 1.09003 * 109.47173 * 299.99906 * 1 2 3 30 30 H 1.08996 * 109.47525 * 59.99617 * 1 2 3 31 31 H 1.08995 * 109.47073 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00329 * 180.02562 * 2 1 3 33 33 H 0.97005 * 119.99853 * 0.02562 * 5 3 2 34 34 H 1.09008 * 109.46706 * 60.00501 * 6 5 3 35 35 H 1.08997 * 109.47450 * 300.00168 * 6 5 3 36 36 H 1.08998 * 109.46899 * 60.00197 * 7 6 5 37 37 H 1.08997 * 109.47286 * 300.00396 * 7 6 5 38 38 H 0.97005 * 119.99695 * 359.97438 * 10 8 7 39 39 H 1.08998 * 109.47325 * 59.99761 * 11 10 8 40 40 H 1.08997 * 109.47061 * 299.99837 * 11 10 8 41 41 H 1.09003 * 111.10909 * 322.95076 * 14 12 11 42 42 H 1.09008 * 111.10406 * 87.02227 * 14 12 11 43 43 H 1.08999 * 110.93127 * 275.31901 * 15 14 12 44 44 H 1.09003 * 110.92673 * 151.65717 * 15 14 12 45 45 H 1.08999 * 113.49670 * 104.52193 * 17 16 15 46 46 H 1.08996 * 113.55763 * 333.99926 * 17 16 15 47 47 H 0.97000 * 120.00221 * 354.91228 * 22 21 19 48 48 H 1.08997 * 113.49376 * 88.03980 * 27 18 17 49 49 H 1.08999 * 113.50076 * 218.57489 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4360 -0.0011 7 6 5.7234 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0009 9 8 5.8705 4.5118 -0.0005 10 7 7.8246 3.4615 -0.0013 11 6 8.5571 4.7303 -0.0007 12 6 10.0614 4.4507 -0.0007 13 1 10.3270 3.8135 0.8428 14 6 10.8575 5.7795 0.0571 15 6 12.2019 5.3499 -0.5955 16 6 11.7375 4.3089 -1.6258 17 6 12.7712 3.2452 -1.9888 18 7 12.3034 3.3468 -3.3809 19 6 12.2711 2.5197 -4.4717 20 1 12.5451 1.4800 -4.3692 21 6 11.8863 3.0173 -5.7091 22 7 11.5633 2.1894 -6.6799 23 14 11.8269 4.8621 -5.9964 24 1 10.4772 5.3741 -5.6483 25 1 12.1124 5.1500 -7.4250 26 1 12.8441 5.5287 -5.1443 27 6 11.8913 4.7296 -3.0886 28 8 10.4538 3.8298 -1.2383 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 3.9717 0.3271 -0.0013 34 1 3.9561 3.0077 0.8890 35 1 3.9555 3.0074 -0.8910 36 1 5.9866 1.5845 -0.8907 37 1 5.9867 1.5852 0.8892 38 1 8.3096 2.6214 -0.0013 39 1 8.2940 5.3013 0.8897 40 1 8.2935 5.3024 -0.8902 41 1 10.3672 6.5567 -0.5292 42 1 11.0063 6.1033 1.0873 43 1 12.8660 4.8989 0.1418 44 1 12.6840 6.1954 -1.0863 45 1 12.5741 2.2745 -1.5339 46 1 13.8013 3.5740 -1.8514 47 1 11.6645 1.2327 -6.5552 48 1 12.6825 5.4619 -3.2492 49 1 10.9513 5.0124 -3.5623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717223327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -81.964719 kcal Electronic energy + Delta-G solvation = -29400.716148 eV Core-core repulsion = 25170.659289 eV Total energy + Delta-G solvation = -4230.056859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57541 -41.13461 -40.57929 -38.34718 -36.44721 -35.67053 -35.59152 -34.47600 -33.15418 -32.24466 -30.79725 -28.75537 -27.49404 -27.04348 -25.45329 -24.09495 -22.69454 -22.52622 -22.10234 -21.30249 -20.78768 -19.71745 -19.54781 -18.18713 -17.85459 -17.37027 -17.18691 -17.14541 -16.85717 -16.38005 -16.09754 -15.63405 -15.50579 -15.40057 -15.27319 -15.10307 -14.96870 -14.76314 -14.41828 -14.22146 -13.95383 -13.62749 -13.37859 -13.24175 -13.04533 -12.96455 -12.67493 -12.60415 -12.48964 -12.36724 -12.21602 -11.82334 -11.70107 -11.55890 -11.39991 -11.29127 -10.98067 -10.84356 -10.48443 -10.24530 -10.12729 -9.83172 -9.23657 -8.62294 -5.44351 1.35876 1.46569 1.56344 1.61535 1.61991 2.08559 2.26049 2.52705 2.64340 3.06259 3.16003 3.34867 3.50412 3.63072 3.64433 3.76736 3.92592 3.98247 4.05423 4.17293 4.42782 4.45077 4.49200 4.50363 4.56699 4.60838 4.64795 4.69082 4.77371 4.82476 4.85111 4.87356 4.95062 4.97071 4.97496 5.06050 5.14538 5.24392 5.31831 5.37095 5.40924 5.46692 5.95324 5.96901 6.27968 6.49731 6.70241 7.07670 7.19986 7.34527 7.54054 8.29832 8.89801 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.002246 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.532168 B =12461.763861 C =14015.667109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.736 5.736 3 C 0.691 3.309 4 O -0.644 6.644 5 N -0.730 5.730 6 C 0.160 3.840 7 C -0.139 4.139 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.715 5.715 11 C 0.123 3.877 12 C 0.061 3.939 13 H 0.103 0.897 14 C -0.139 4.139 15 C -0.128 4.128 16 C 0.090 3.910 17 C 0.110 3.890 18 N -0.654 5.654 19 C -0.284 4.284 20 H 0.048 0.952 21 C -0.088 4.088 22 N -0.972 5.972 23 Si 1.101 2.899 24 H -0.290 1.290 25 H -0.301 1.301 26 H -0.246 1.246 27 C 0.085 3.915 28 O -0.366 6.366 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.417 0.583 33 H 0.417 0.583 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.416 0.584 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.246 0.754 48 H 0.075 0.925 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 -2.152 23.943 25.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.393 5.393 3 C 0.391 3.609 4 O -0.525 6.525 5 N -0.387 5.387 6 C 0.035 3.965 7 C -0.179 4.179 8 C 0.299 3.701 9 O -0.468 6.468 10 N -0.367 5.367 11 C -0.001 4.001 12 C 0.004 3.996 13 H 0.121 0.879 14 C -0.177 4.177 15 C -0.166 4.166 16 C 0.049 3.951 17 C -0.015 4.015 18 N -0.382 5.382 19 C -0.412 4.412 20 H 0.066 0.934 21 C -0.280 4.280 22 N -0.618 5.618 23 Si 0.927 3.073 24 H -0.217 1.217 25 H -0.229 1.229 26 H -0.170 1.170 27 C -0.040 4.040 28 O -0.285 6.285 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.253 0.747 33 H 0.254 0.746 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.252 0.748 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.995 0.361 22.555 25.095 hybrid contribution 1.050 -2.600 0.194 2.811 sum -9.945 -2.240 22.749 24.928 Atomic orbital electron populations 1.21540 0.77412 1.04163 1.01089 1.44816 1.08285 1.06729 1.79421 1.16287 0.82320 0.84556 0.77771 1.90923 1.69069 1.32659 1.59883 1.44818 1.04069 1.10144 1.79702 1.20621 0.89758 0.84596 1.01574 1.21735 0.92742 0.95307 1.08069 1.20898 0.82598 0.91599 0.75009 1.90731 1.68989 1.35446 1.51677 1.45889 1.05994 1.10531 1.74286 1.21551 0.89830 0.86317 1.02411 1.23573 0.92837 0.95609 0.87551 0.87892 1.23271 0.94325 0.95964 1.04092 1.22922 0.98452 0.97966 0.97238 1.22846 0.84316 0.94387 0.93600 1.22947 0.96749 0.98058 0.83754 1.46151 1.71322 1.11398 1.09349 1.19939 1.42907 0.90744 0.87595 0.93424 1.27019 0.99075 1.10345 0.91550 1.71008 1.50805 1.03245 1.36697 0.83326 0.77503 0.71248 0.75249 1.21715 1.22946 1.17024 1.23333 0.97886 0.88112 0.94659 1.88411 1.33538 1.66182 1.40391 0.93478 0.93895 0.86615 0.74655 0.74551 0.92585 0.93930 0.86101 0.84168 0.74787 0.88517 0.93477 0.90389 0.86110 0.87503 0.88383 0.93706 0.90882 0.94492 0.90740 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 10.70 127.77 1.37 2.55 16 2 N -0.74 -9.57 5.72 -500.20 -2.86 -12.43 16 3 C 0.69 15.34 8.57 179.05 1.53 16.87 16 4 O -0.64 -21.73 16.34 -4.00 -0.07 -21.79 16 5 N -0.73 -11.71 5.56 -478.52 -2.66 -14.37 16 6 C 0.16 3.38 4.96 86.38 0.43 3.81 16 7 C -0.14 -2.01 5.81 29.85 0.17 -1.84 16 8 C 0.51 11.94 7.83 87.66 0.69 12.62 16 9 O -0.59 -19.29 15.98 -3.04 -0.05 -19.34 16 10 N -0.72 -14.71 5.54 -463.07 -2.56 -17.27 16 11 C 0.12 2.65 5.39 86.38 0.47 3.11 16 12 C 0.06 1.21 3.48 31.28 0.11 1.32 16 13 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 14 C -0.14 -2.12 6.58 32.14 0.21 -1.91 16 15 C -0.13 -2.36 6.39 31.67 0.20 -2.16 16 16 C 0.09 2.77 1.75 -10.68 -0.02 2.75 16 17 C 0.11 4.01 8.20 83.38 0.68 4.69 16 18 N -0.65 -32.10 3.63 -738.99 -2.68 -34.78 16 19 C -0.28 -17.01 11.03 84.04 0.93 -16.08 16 20 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 21 C -0.09 -5.46 5.50 84.86 0.47 -5.00 16 22 N -0.97 -64.77 13.70 21.65 0.30 -64.48 16 23 Si 1.10 55.36 25.51 68.60 1.75 57.11 16 24 H -0.29 -14.25 6.97 99.48 0.69 -13.56 16 25 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 26 H -0.25 -10.69 5.65 99.48 0.56 -10.13 16 27 C 0.09 3.43 5.09 83.47 0.42 3.85 16 28 O -0.37 -11.52 10.84 -148.98 -1.62 -13.14 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.42 2.08 8.84 -92.71 -0.82 1.26 16 33 H 0.42 3.03 8.49 -92.70 -0.79 2.25 16 34 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 35 H 0.04 1.19 8.10 -2.39 -0.02 1.18 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.42 6.91 8.47 -92.70 -0.79 6.12 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 42 H 0.12 1.02 8.14 -2.38 -0.02 1.01 16 43 H 0.11 1.47 8.13 -2.39 -0.02 1.45 16 44 H 0.10 1.64 7.81 -2.39 -0.02 1.62 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 47 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 48 H 0.08 2.71 6.79 -2.39 -0.02 2.69 16 49 H 0.03 1.53 6.28 -2.39 -0.01 1.51 16 Total: -1.00 -96.99 399.23 -4.39 -101.38 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -1.60 Total: 14.52 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 7.66 Total: 24.59 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -10.47 Total: -143.34 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.73 Total: -54.27 kcal Atomic # 14 Polarization: 55.36 SS G_CDS: 1.75 Total: 57.11 kcal Total: -96.99 -4.39 -101.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717223327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.412 kcal (2) G-P(sol) polarization free energy of solvation -96.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds