Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 C 1.52997 * 109.46705 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46831 * 180.02562 * 4 3 2 6 6 C 1.48602 * 110.99936 * 54.49899 * 5 4 3 7 7 C 1.54503 * 104.60813 * 158.80446 * 6 5 4 8 8 C 1.53797 * 104.89607 * 336.22187 * 7 6 5 9 9 C 1.48664 * 110.99896 * 170.00098 * 5 4 3 10 10 C 1.52498 * 110.24661 * 119.01426 * 8 7 6 11 11 C 1.53132 * 109.59838 * 182.15648 * 10 8 7 12 12 C 1.53181 * 109.29064 * 299.49478 * 11 10 8 13 13 N 1.46937 * 108.90390 * 55.05290 * 12 11 10 14 14 C 1.34775 * 120.68328 * 126.01218 * 13 12 11 15 15 O 1.21287 * 119.99643 * 179.97438 * 14 13 12 16 16 C 1.50694 * 120.00192 * 359.97438 * 14 13 12 17 17 S 1.80994 * 109.47420 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00109 * 180.02562 * 17 16 14 19 19 H 1.07989 * 120.00220 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99797 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00173 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00096 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47247 * 90.00215 * 22 20 18 24 24 H 1.48502 * 109.47153 * 209.99952 * 22 20 18 25 25 H 1.48502 * 109.47238 * 330.00012 * 22 20 18 26 26 C 1.47034 * 118.63207 * 305.98878 * 13 12 11 27 27 H 1.09004 * 109.46550 * 60.00198 * 1 2 3 28 28 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47123 * 300.00353 * 1 2 3 30 30 H 1.08998 * 109.47123 * 239.99647 * 2 1 3 31 31 H 1.09004 * 109.46550 * 119.99801 * 2 1 3 32 32 H 1.08998 * 109.46757 * 60.00153 * 3 2 1 33 33 H 1.08995 * 109.46759 * 299.99954 * 3 2 1 34 34 H 1.09000 * 109.47638 * 60.00274 * 4 3 2 35 35 H 1.09005 * 109.47524 * 300.00145 * 4 3 2 36 36 H 1.09001 * 110.41015 * 40.02365 * 6 5 4 37 37 H 1.09001 * 110.41001 * 277.58270 * 6 5 4 38 38 H 1.09005 * 110.35196 * 217.36984 * 7 6 5 39 39 H 1.08995 * 110.35566 * 95.08202 * 7 6 5 40 40 H 1.09002 * 110.43406 * 82.57998 * 9 5 4 41 41 H 1.09000 * 110.43572 * 320.08012 * 9 5 4 42 42 H 1.08998 * 109.45338 * 302.19627 * 10 8 7 43 43 H 1.09004 * 109.45050 * 62.11891 * 10 8 7 44 44 H 1.08994 * 109.50392 * 179.54656 * 11 10 8 45 45 H 1.09007 * 109.49608 * 59.43678 * 11 10 8 46 46 H 1.08995 * 109.56735 * 295.22306 * 12 11 10 47 47 H 1.09004 * 109.66120 * 174.93076 * 12 11 10 48 48 H 1.09003 * 109.47194 * 300.00387 * 16 14 13 49 49 H 1.09007 * 109.47217 * 59.99911 * 16 14 13 50 50 H 0.96998 * 120.00491 * 179.97438 * 21 20 18 51 51 H 1.08999 * 109.58791 * 293.00544 * 26 13 12 52 52 H 1.09004 * 109.58306 * 172.58627 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.4772 3.5977 1.1307 7 6 4.4467 4.7833 1.3348 8 6 5.7869 4.3027 0.7534 9 6 5.5259 2.8740 0.2429 10 6 6.2144 5.2027 -0.4011 11 6 7.5217 4.6798 -1.0031 12 6 8.6136 4.6907 0.0712 13 7 8.1455 3.9229 1.2333 14 6 8.8830 2.9106 1.7311 15 8 8.4849 2.2854 2.6911 16 6 10.2020 2.5554 1.0948 17 16 10.9455 1.1648 1.9832 18 6 12.4305 0.9678 1.0556 19 1 12.6343 1.6184 0.2181 20 6 13.3379 -0.0242 1.4007 21 7 14.4471 -0.1717 0.7074 22 14 12.9851 -1.1499 2.8489 23 1 12.2380 -2.3436 2.3776 24 1 14.2659 -1.5794 3.4656 25 1 12.1709 -0.4218 3.8550 26 6 6.8564 4.2822 1.8424 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 3.4352 2.9820 2.0291 37 1 2.4828 3.9604 0.8705 38 1 4.5526 5.0079 2.3962 39 1 4.0917 5.6607 0.7944 40 1 6.0702 2.6960 -0.6845 41 1 5.8105 2.1420 0.9987 42 1 5.4380 5.2052 -1.1661 43 1 6.3645 6.2179 -0.0335 44 1 7.8215 5.3195 -1.8332 45 1 7.3749 3.6612 -1.3626 46 1 8.8201 5.7179 0.3714 47 1 9.5220 4.2364 -0.3245 48 1 10.0397 2.2759 0.0537 49 1 10.8705 3.4152 1.1401 50 1 15.0814 -0.8647 0.9487 51 1 6.9308 5.2687 2.3000 52 1 6.5921 3.5446 2.6002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717245258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -49.279085 kcal Electronic energy + Delta-G solvation = -28278.023339 eV Core-core repulsion = 24595.677050 eV Total energy + Delta-G solvation = -3682.346289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82583 -38.96449 -37.01247 -35.33560 -33.11264 -32.44283 -32.02530 -30.27956 -29.03207 -28.65553 -25.68199 -25.48077 -25.00991 -23.74223 -22.36740 -21.74713 -20.55393 -19.65484 -18.52947 -17.67255 -16.83785 -16.26615 -16.23589 -15.62747 -15.50921 -15.06439 -14.92756 -14.60803 -14.25177 -14.09330 -13.85006 -13.77320 -13.66415 -13.34163 -13.15955 -12.98639 -12.81540 -12.72628 -12.21322 -12.18862 -12.05066 -11.77678 -11.56313 -11.46168 -11.41013 -11.26554 -11.21814 -11.01684 -10.98262 -10.85781 -10.81838 -10.63313 -10.58840 -10.42512 -9.86174 -9.45085 -9.00919 -8.70463 -8.51493 -8.49237 -6.92422 -6.29409 -4.01055 2.71219 2.93657 3.19787 3.32518 3.49943 3.58668 3.74694 4.23946 4.32422 4.38986 4.44431 4.60903 4.64334 4.70801 4.81757 4.84082 4.90652 4.94684 5.00658 5.08224 5.09675 5.12292 5.22422 5.24840 5.31420 5.37259 5.42096 5.44776 5.52395 5.54399 5.55952 5.58459 5.66592 5.68292 5.69324 5.75240 5.76512 5.79199 5.81225 5.83505 5.91911 5.98433 5.98975 6.03040 6.11324 6.20348 6.56574 6.63828 6.83248 7.48657 7.93652 8.41042 8.44606 9.16843 10.79793 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002737 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.233350 B =10227.861486 C =11728.304724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.117 4.117 4 C 0.042 3.958 5 N -0.510 5.510 6 C 0.032 3.968 7 C -0.114 4.114 8 C -0.074 4.074 9 C 0.043 3.957 10 C -0.099 4.099 11 C -0.139 4.139 12 C 0.106 3.894 13 N -0.616 5.616 14 C 0.534 3.466 15 O -0.521 6.521 16 C -0.121 4.121 17 S -0.144 6.144 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.271 0.729 51 H 0.065 0.935 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.196 11.052 -3.351 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.087 4.087 5 N -0.234 5.234 6 C -0.096 4.096 7 C -0.152 4.152 8 C -0.076 4.076 9 C -0.084 4.084 10 C -0.137 4.137 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.352 5.352 14 C 0.322 3.678 15 O -0.396 6.396 16 C -0.271 4.271 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.739 10.231 -2.474 27.808 hybrid contribution 0.866 -0.260 0.068 0.907 sum -24.873 9.972 -2.406 26.905 Atomic orbital electron populations 1.21755 0.95777 1.01576 1.01729 1.21509 0.95915 0.96742 1.02204 1.21646 0.94478 0.96838 1.02482 1.22335 0.95430 0.89620 1.01273 1.65489 1.04819 1.11998 1.41050 1.23126 0.98724 0.94940 0.92793 1.22334 0.93615 0.98254 1.01016 1.21285 0.94726 0.95641 0.95916 1.23229 0.88602 0.95634 1.00979 1.21449 0.97200 0.97997 0.97011 1.22018 0.95221 1.02529 0.97899 1.21756 0.97748 0.96404 0.85829 1.48074 1.20805 1.34142 1.32159 1.20287 0.85504 0.78627 0.83384 1.90683 1.71389 1.50734 1.26830 1.23304 0.96011 1.04098 1.03712 1.84787 1.23937 1.39121 1.43892 1.22303 1.03863 1.22229 1.18381 0.89398 1.24711 0.93869 0.96303 0.96430 1.69937 1.09401 1.33035 1.39308 0.86738 0.79052 0.82248 0.83836 1.19236 1.19945 1.15935 1.21582 0.82077 1.01128 0.94914 0.92738 0.92780 0.92861 0.91854 0.92066 0.92032 0.91231 0.90592 0.94542 0.93858 0.90218 0.91015 0.90560 0.89690 0.93309 0.90924 0.91847 0.90541 0.90998 0.91416 0.89204 0.88605 0.88547 0.91946 0.91635 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.93 4.93 -26.73 -0.13 -1.06 16 4 C 0.04 0.41 5.06 -3.82 -0.02 0.39 16 5 N -0.51 -5.15 5.49 -230.04 -1.26 -6.42 16 6 C 0.03 0.28 5.11 -2.09 -0.01 0.27 16 7 C -0.11 -0.92 6.29 -25.53 -0.16 -1.08 16 8 C -0.07 -0.71 0.69 -154.04 -0.11 -0.82 16 9 C 0.04 0.49 5.22 -2.35 -0.01 0.48 16 10 C -0.10 -0.83 4.48 -26.92 -0.12 -0.95 16 11 C -0.14 -1.22 5.88 -26.57 -0.16 -1.38 16 12 C 0.11 1.11 6.33 -3.71 -0.02 1.08 16 13 N -0.62 -8.29 2.79 -173.01 -0.48 -8.78 16 14 C 0.53 9.67 7.72 -10.99 -0.08 9.58 16 15 O -0.52 -11.31 15.29 5.55 0.08 -11.22 16 16 C -0.12 -2.36 4.50 36.00 0.16 -2.20 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 18 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 22 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C 0.13 1.47 4.81 -3.93 -0.02 1.45 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 6.84 -51.93 -0.36 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.39 7.88 -51.93 -0.41 -0.02 16 36 H 0.04 0.40 7.99 -51.93 -0.41 -0.01 16 37 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 39 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 40 H 0.08 1.01 5.86 -51.93 -0.30 0.71 16 41 H 0.05 0.68 7.40 -51.93 -0.38 0.29 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.72 6.18 -51.92 -0.32 0.40 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 48 H 0.10 1.75 7.70 -51.91 -0.40 1.35 16 49 H 0.10 1.76 7.93 -51.91 -0.41 1.35 16 50 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.09 1.26 6.86 -51.93 -0.36 0.90 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -32.68 404.87 -11.26 -43.94 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -9.51 Total: -1.45 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.26 Total: -7.88 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.97 Total: -40.97 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.68 -11.26 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717245258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.338 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds