Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 C 1.52997 * 109.46705 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46831 * 180.02562 * 4 3 2 6 6 C 1.48602 * 110.99936 * 54.49899 * 5 4 3 7 7 C 1.54503 * 104.60813 * 158.80446 * 6 5 4 8 8 C 1.53797 * 104.89607 * 336.22187 * 7 6 5 9 9 C 1.48664 * 110.99896 * 170.00098 * 5 4 3 10 10 C 1.52498 * 110.24661 * 119.01426 * 8 7 6 11 11 C 1.53132 * 109.59838 * 182.15648 * 10 8 7 12 12 C 1.53181 * 109.29064 * 299.49478 * 11 10 8 13 13 N 1.46937 * 108.90390 * 55.05290 * 12 11 10 14 14 C 1.34775 * 120.68328 * 126.01218 * 13 12 11 15 15 O 1.21287 * 119.99643 * 179.97438 * 14 13 12 16 16 C 1.50694 * 120.00192 * 359.97438 * 14 13 12 17 17 S 1.80994 * 109.47420 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00109 * 180.02562 * 17 16 14 19 19 H 1.07989 * 120.00220 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99797 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00173 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00096 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47247 * 90.00215 * 22 20 18 24 24 H 1.48502 * 109.47153 * 209.99952 * 22 20 18 25 25 H 1.48502 * 109.47238 * 330.00012 * 22 20 18 26 26 C 1.47034 * 118.63207 * 305.98878 * 13 12 11 27 27 H 1.09004 * 109.46550 * 60.00198 * 1 2 3 28 28 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47123 * 300.00353 * 1 2 3 30 30 H 1.08998 * 109.47123 * 239.99647 * 2 1 3 31 31 H 1.09004 * 109.46550 * 119.99801 * 2 1 3 32 32 H 1.08998 * 109.46757 * 60.00153 * 3 2 1 33 33 H 1.08995 * 109.46759 * 299.99954 * 3 2 1 34 34 H 1.09000 * 109.47638 * 60.00274 * 4 3 2 35 35 H 1.09005 * 109.47524 * 300.00145 * 4 3 2 36 36 H 1.09001 * 110.41015 * 40.02365 * 6 5 4 37 37 H 1.09001 * 110.41001 * 277.58270 * 6 5 4 38 38 H 1.09005 * 110.35196 * 217.36984 * 7 6 5 39 39 H 1.08995 * 110.35566 * 95.08202 * 7 6 5 40 40 H 1.09002 * 110.43406 * 82.57998 * 9 5 4 41 41 H 1.09000 * 110.43572 * 320.08012 * 9 5 4 42 42 H 1.08998 * 109.45338 * 302.19627 * 10 8 7 43 43 H 1.09004 * 109.45050 * 62.11891 * 10 8 7 44 44 H 1.08994 * 109.50392 * 179.54656 * 11 10 8 45 45 H 1.09007 * 109.49608 * 59.43678 * 11 10 8 46 46 H 1.08995 * 109.56735 * 295.22306 * 12 11 10 47 47 H 1.09004 * 109.66120 * 174.93076 * 12 11 10 48 48 H 1.09003 * 109.47194 * 300.00387 * 16 14 13 49 49 H 1.09007 * 109.47217 * 59.99911 * 16 14 13 50 50 H 0.96998 * 120.00491 * 179.97438 * 21 20 18 51 51 H 1.08999 * 109.58791 * 293.00544 * 26 13 12 52 52 H 1.09004 * 109.58306 * 172.58627 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8274 0.0013 6 6 3.4772 3.5977 1.1307 7 6 4.4467 4.7833 1.3348 8 6 5.7869 4.3027 0.7534 9 6 5.5259 2.8740 0.2429 10 6 6.2144 5.2027 -0.4011 11 6 7.5217 4.6798 -1.0031 12 6 8.6136 4.6907 0.0712 13 7 8.1455 3.9229 1.2333 14 6 8.8830 2.9106 1.7311 15 8 8.4849 2.2854 2.6911 16 6 10.2020 2.5554 1.0948 17 16 10.9455 1.1648 1.9832 18 6 12.4305 0.9678 1.0556 19 1 12.6343 1.6184 0.2181 20 6 13.3379 -0.0242 1.4007 21 7 14.4471 -0.1717 0.7074 22 14 12.9851 -1.1499 2.8489 23 1 12.2380 -2.3436 2.3776 24 1 14.2659 -1.5794 3.4656 25 1 12.1709 -0.4218 3.8550 26 6 6.8564 4.2822 1.8424 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 3.4352 2.9820 2.0291 37 1 2.4828 3.9604 0.8705 38 1 4.5526 5.0079 2.3962 39 1 4.0917 5.6607 0.7944 40 1 6.0702 2.6960 -0.6845 41 1 5.8105 2.1420 0.9987 42 1 5.4380 5.2052 -1.1661 43 1 6.3645 6.2179 -0.0335 44 1 7.8215 5.3195 -1.8332 45 1 7.3749 3.6612 -1.3626 46 1 8.8201 5.7179 0.3714 47 1 9.5220 4.2364 -0.3245 48 1 10.0397 2.2759 0.0537 49 1 10.8705 3.4152 1.1401 50 1 15.0814 -0.8647 0.9487 51 1 6.9308 5.2687 2.3000 52 1 6.5921 3.5446 2.6002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717245258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -69.369779 kcal Electronic energy + Delta-G solvation = -28278.894537 eV Core-core repulsion = 24595.677050 eV Total energy + Delta-G solvation = -3683.217487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79792 -40.12431 -37.99710 -36.13385 -34.69267 -34.02558 -32.86766 -31.44855 -30.03350 -29.47347 -27.89032 -26.36328 -26.00284 -24.49450 -23.20260 -22.40066 -21.42810 -20.82989 -19.72790 -19.28418 -18.23517 -17.29465 -17.09387 -17.04693 -16.76273 -16.36721 -16.15772 -15.72592 -15.42866 -15.06136 -14.92378 -14.78431 -14.67043 -14.63226 -14.24019 -14.12608 -13.71417 -13.62750 -13.42734 -13.38032 -13.06238 -13.03483 -12.87986 -12.69854 -12.48753 -12.29464 -12.21451 -12.05664 -11.89381 -11.89221 -11.73739 -11.65110 -11.49232 -11.41391 -11.19486 -11.19275 -10.88652 -10.53936 -9.69618 -9.49688 -9.02785 -8.53475 -6.24584 0.95089 1.28766 1.43684 1.49831 1.52290 2.05518 2.22880 2.66353 2.84578 2.94196 3.43301 3.52936 3.63839 3.77789 3.91994 4.01081 4.06679 4.13690 4.15302 4.21561 4.21888 4.25700 4.35420 4.37614 4.39421 4.50549 4.58237 4.61641 4.65782 4.66979 4.74770 4.75050 4.84664 4.87580 4.92443 4.94604 5.01699 5.06031 5.07567 5.15888 5.20140 5.23200 5.33773 5.38012 5.42808 5.45961 5.54125 5.69056 5.82733 6.01065 6.09438 6.25407 6.91672 7.06937 8.58862 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002737 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.233350 B =10227.861486 C =11728.304724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.106 4.106 4 C 0.042 3.958 5 N -0.509 5.509 6 C 0.030 3.970 7 C -0.108 4.108 8 C -0.068 4.068 9 C 0.045 3.955 10 C -0.093 4.093 11 C -0.134 4.134 12 C 0.097 3.903 13 N -0.602 5.602 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.104 4.104 17 S -0.179 6.179 18 C -0.527 4.527 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.238 1.238 26 C 0.125 3.875 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.018 0.982 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.013 0.987 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.112 0.888 50 H 0.277 0.723 51 H 0.091 0.909 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.203 13.243 -3.685 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.144 4.144 4 C -0.087 4.087 5 N -0.232 5.232 6 C -0.097 4.097 7 C -0.146 4.146 8 C -0.069 4.069 9 C -0.083 4.083 10 C -0.130 4.130 11 C -0.172 4.172 12 C -0.024 4.024 13 N -0.336 5.336 14 C 0.321 3.679 15 O -0.445 6.445 16 C -0.255 4.255 17 S 0.048 5.952 18 C -0.674 4.674 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.162 1.162 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.126 0.874 49 H 0.130 0.870 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.763 12.466 -2.845 30.566 hybrid contribution 1.420 -0.834 0.067 1.648 sum -26.343 11.632 -2.778 28.930 Atomic orbital electron populations 1.21736 0.94704 1.02014 1.02140 1.21510 0.96831 0.96283 1.01794 1.21565 0.92776 0.97288 1.02776 1.22343 0.96843 0.89437 1.00068 1.65514 1.03978 1.12109 1.41628 1.23212 0.99746 0.94912 0.91877 1.22354 0.92089 0.98427 1.01758 1.21260 0.94951 0.94815 0.95884 1.23139 0.89526 0.96168 0.99435 1.21438 0.96826 0.98440 0.96308 1.22001 0.94982 1.02254 0.97953 1.22078 0.98171 0.97091 0.85107 1.48093 1.20698 1.32476 1.32301 1.20001 0.85278 0.79586 0.83049 1.90667 1.72269 1.52723 1.28891 1.23264 0.96960 1.01867 1.03431 1.84727 1.22821 1.42747 1.44905 1.22425 1.05308 1.21746 1.17964 0.91871 1.25541 0.93760 0.97720 0.98889 1.70009 1.10338 1.34068 1.40896 0.85888 0.79474 0.80324 0.80808 1.18803 1.18168 1.16220 1.21751 0.81516 1.01320 0.95155 0.92202 0.92384 0.92541 0.92029 0.92795 0.91609 0.90841 0.91275 0.96371 0.94908 0.88543 0.90246 0.88489 0.90568 0.96903 0.90341 0.89689 0.88053 0.92691 0.88703 0.89817 0.87415 0.87020 0.91332 0.89137 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.80 5.93 30.60 0.18 -1.62 16 3 C -0.11 -1.61 4.93 30.59 0.15 -1.45 16 4 C 0.04 0.82 5.06 86.30 0.44 1.26 16 5 N -0.51 -9.94 5.49 -881.72 -4.84 -14.78 16 6 C 0.03 0.48 5.11 86.48 0.44 0.92 16 7 C -0.11 -1.44 6.29 31.37 0.20 -1.25 16 8 C -0.07 -1.16 0.69 -51.88 -0.04 -1.20 16 9 C 0.05 1.03 5.22 86.28 0.45 1.48 16 10 C -0.09 -1.21 4.48 30.47 0.14 -1.08 16 11 C -0.13 -1.98 5.88 30.70 0.18 -1.80 16 12 C 0.10 1.78 6.33 86.36 0.55 2.33 16 13 N -0.60 -15.51 2.79 -819.67 -2.29 -17.80 16 14 C 0.53 19.36 7.72 87.66 0.68 20.04 16 15 O -0.57 -25.22 15.29 -3.05 -0.05 -25.27 16 16 C -0.10 -4.09 4.50 71.23 0.32 -3.77 16 17 S -0.18 -9.23 18.55 -56.49 -1.05 -10.28 16 18 C -0.53 -30.95 10.04 67.95 0.68 -30.27 16 19 H 0.06 3.90 8.03 -2.92 -0.02 3.87 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.93 13.97 21.65 0.30 -55.63 16 22 Si 0.91 45.53 27.74 68.60 1.90 47.44 16 23 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 26 C 0.12 2.74 4.81 86.16 0.41 3.15 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 0.94 6.84 -2.39 -0.02 0.93 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.02 0.42 7.88 -2.38 -0.02 0.40 16 36 H 0.03 0.59 7.99 -2.39 -0.02 0.57 16 37 H 0.10 1.23 7.68 -2.39 -0.02 1.21 16 38 H 0.08 0.97 7.70 -2.38 -0.02 0.96 16 39 H 0.10 0.96 7.70 -2.39 -0.02 0.94 16 40 H 0.08 1.84 5.86 -2.39 -0.01 1.82 16 41 H 0.01 0.38 7.40 -2.39 -0.02 0.36 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.03 6.18 -2.38 -0.01 1.01 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.66 5.93 -2.38 -0.01 1.65 16 48 H 0.11 3.94 7.70 -2.39 -0.02 3.92 16 49 H 0.11 4.02 7.93 -2.39 -0.02 4.00 16 50 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 51 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.06 1.78 6.86 -2.38 -0.02 1.77 16 Total: -1.00 -72.80 404.87 0.78 -72.02 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.83 Total: 15.35 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.96 Total: -11.06 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -6.83 Total: -88.21 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.05 Total: -10.28 kcal Total: -72.80 0.78 -72.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717245258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.654 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds