Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00061 * 2 1 4 4 C 1.52996 * 109.47146 * 125.00300 * 3 2 1 5 5 C 1.53001 * 109.47229 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46905 * 179.97438 * 5 4 3 7 7 C 1.46853 * 111.00054 * 189.99832 * 6 5 4 8 8 C 1.53034 * 109.52741 * 185.83920 * 7 6 5 9 9 C 1.53120 * 109.27789 * 300.81996 * 8 7 6 10 10 C 1.53000 * 109.52060 * 297.68671 * 9 8 7 11 11 C 1.52996 * 109.52390 * 177.55715 * 9 8 7 12 12 N 1.46498 * 109.47059 * 180.12483 * 11 9 8 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 9 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00053 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47356 * 89.99148 * 21 19 17 23 23 H 1.48497 * 109.47342 * 209.99750 * 21 19 17 24 24 H 1.48505 * 109.46847 * 329.99403 * 21 19 17 25 25 C 1.53120 * 109.21000 * 57.62213 * 9 8 7 26 26 C 1.46850 * 111.00086 * 314.20497 * 6 5 4 27 27 H 1.08001 * 120.00204 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00003 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00035 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.46920 * 4.99912 * 3 2 1 31 31 H 1.09004 * 109.46869 * 244.99853 * 3 2 1 32 32 H 1.09002 * 109.47307 * 59.99808 * 4 3 2 33 33 H 1.09002 * 109.46851 * 300.00094 * 4 3 2 34 34 H 1.08994 * 109.46972 * 59.99530 * 5 4 3 35 35 H 1.09004 * 109.46734 * 299.99521 * 5 4 3 36 36 H 1.09004 * 109.45979 * 65.81805 * 7 6 5 37 37 H 1.09005 * 109.45214 * 305.85399 * 7 6 5 38 38 H 1.08995 * 109.50622 * 180.87746 * 8 7 6 39 39 H 1.09002 * 109.53395 * 60.77735 * 8 7 6 40 40 H 1.08993 * 109.47164 * 299.86890 * 10 9 8 41 41 H 1.09003 * 109.47399 * 59.87712 * 10 9 8 42 42 H 1.09009 * 109.46576 * 179.87006 * 10 9 8 43 43 H 1.09004 * 109.47066 * 60.12750 * 11 9 8 44 44 H 1.08994 * 109.46974 * 300.12898 * 11 9 8 45 45 H 0.97001 * 120.00384 * 0.02562 * 12 11 9 46 46 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 47 47 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 48 48 H 0.97000 * 120.00636 * 180.02562 * 20 19 17 49 49 H 1.08999 * 109.50697 * 62.31901 * 25 9 8 50 50 H 1.09004 * 109.50290 * 182.43487 * 25 9 8 51 51 H 1.08991 * 109.46320 * 294.17752 * 26 6 5 52 52 H 1.08996 * 109.46019 * 54.15280 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 6 3.7996 2.6583 1.1819 6 7 4.7320 2.6853 2.3168 7 6 5.3098 4.0241 2.4915 8 6 6.3802 3.9806 3.5843 9 6 5.7465 3.5030 4.8939 10 6 4.6730 4.4996 5.3357 11 6 6.8239 3.3992 5.9752 12 7 6.2170 2.9393 7.2267 13 6 6.9816 2.7679 8.3233 14 8 8.1711 2.9993 8.2754 15 6 6.3584 2.2889 9.6091 16 16 7.6340 2.1605 10.8867 17 6 6.6560 1.5980 12.2401 18 1 5.5954 1.4399 12.1110 19 6 7.2487 1.3570 13.4718 20 7 6.5182 0.9363 14.4827 21 14 9.0832 1.6297 13.6949 22 1 9.3264 3.0284 14.1302 23 1 9.6012 0.6935 14.7246 24 1 9.7803 1.3838 12.4069 25 6 5.1090 2.1285 4.6731 26 6 4.0764 2.2253 3.5476 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5065 1.0920 33 1 2.4773 1.2355 2.1129 34 1 3.0945 3.4845 1.2717 35 1 4.3574 2.7562 0.2505 36 1 4.5249 4.7236 2.7793 37 1 5.7607 4.3500 1.5541 38 1 6.7978 4.9776 3.7245 39 1 7.1726 3.2920 3.2911 40 1 5.1273 5.4782 5.4904 41 1 3.9058 4.5729 4.5648 42 1 4.2209 4.1576 6.2667 43 1 7.2788 4.3776 6.1300 44 1 7.5882 2.6891 5.6595 45 1 5.2656 2.7539 7.2650 46 1 5.5945 2.9976 9.9287 47 1 5.9031 1.3113 9.4500 48 1 6.9323 0.7682 15.3436 49 1 5.8804 1.4095 4.3972 50 1 4.6189 1.8030 5.5908 51 1 3.2975 2.9332 3.8306 52 1 3.6316 1.2449 3.3775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724277393.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = -34.550269 kcal Electronic energy + Delta-G solvation = -27012.866558 eV Core-core repulsion = 23331.158958 eV Total energy + Delta-G solvation = -3681.707600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50178 -39.01745 -37.11997 -35.52380 -33.50126 -32.42797 -31.55933 -31.11736 -29.60387 -28.08881 -26.77246 -25.60827 -25.00298 -23.98402 -22.32788 -20.97317 -20.36513 -20.23024 -18.68960 -17.90227 -16.74691 -16.28831 -16.11014 -15.80311 -15.42594 -15.35880 -15.04532 -14.94747 -14.74631 -14.53063 -14.17282 -13.88818 -13.65082 -13.48971 -13.15302 -13.03191 -12.82548 -12.77343 -12.40753 -12.30560 -12.01799 -11.94511 -11.81915 -11.74468 -11.46953 -11.28763 -11.25479 -11.13809 -10.99836 -10.83221 -10.73778 -10.52065 -10.38568 -9.84389 -9.77895 -9.48396 -9.00023 -8.89891 -8.60903 -8.48334 -6.90202 -6.27911 -3.99372 1.83339 2.79763 3.02459 3.32987 3.36800 3.48797 3.51858 3.69542 4.26149 4.31752 4.34363 4.36591 4.47972 4.51077 4.71133 4.75242 4.80007 4.84761 4.91083 4.96904 5.02919 5.06792 5.11161 5.11201 5.20934 5.25139 5.28129 5.32933 5.37817 5.39769 5.46990 5.52799 5.55561 5.63815 5.69963 5.72002 5.73446 5.79869 5.80244 5.84286 5.89643 6.00403 6.03134 6.13742 6.18357 6.31811 6.58534 6.73258 6.74540 7.65321 7.95122 8.42565 8.53923 9.18378 10.81304 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.001814 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.132275 B =15432.264230 C =16529.414776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C -0.094 4.094 4 C -0.120 4.120 5 C 0.056 3.944 6 N -0.537 5.537 7 C 0.057 3.943 8 C -0.103 4.103 9 C -0.072 4.072 10 C -0.147 4.147 11 C 0.133 3.867 12 N -0.734 5.734 13 C 0.529 3.471 14 O -0.521 6.521 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.107 4.107 26 C 0.048 3.952 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.035 0.965 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 4.079 -31.581 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.157 4.157 5 C -0.072 4.072 6 N -0.262 5.262 7 C -0.071 4.071 8 C -0.141 4.141 9 C -0.073 4.073 10 C -0.204 4.204 11 C 0.009 3.991 12 N -0.389 5.389 13 C 0.315 3.685 14 O -0.395 6.395 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.145 4.145 26 C -0.079 4.079 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.232 0.768 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.053 0.947 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.935 4.100 -31.567 32.807 hybrid contribution -1.923 0.215 0.647 2.040 sum -9.858 4.315 -30.920 32.739 Atomic orbital electron populations 1.23873 0.96019 1.01861 1.01575 1.22967 0.96022 0.98562 0.99531 1.20736 0.98110 0.95404 0.98885 1.21714 0.97774 0.97893 0.98361 1.22132 0.93792 0.96762 0.94496 1.61992 1.34347 1.25450 1.04380 1.22092 0.96968 0.88972 0.99055 1.21563 0.97923 1.01818 0.92833 1.20839 0.95568 0.96048 0.94848 1.21988 0.98299 0.98966 1.01124 1.21305 0.94855 1.00178 0.82731 1.46005 1.12007 1.70433 1.10480 1.20259 0.86928 0.76854 0.84432 1.90698 1.15178 1.49278 1.84381 1.23279 1.03922 1.04503 0.95775 1.84787 1.13194 1.88268 1.05299 1.22326 0.97516 1.51603 0.95459 0.89413 1.24713 0.98689 0.93299 0.94612 1.69936 1.36239 1.43681 1.01873 0.86731 0.85293 0.79192 0.80618 1.19226 1.19951 1.15910 1.21671 0.98824 0.96415 0.97604 1.22256 0.95564 1.00603 0.89493 0.88516 0.88691 0.87329 0.91679 0.90887 0.90767 0.91396 0.95054 0.90678 0.94559 0.90808 0.91081 0.90588 0.92250 0.92418 0.92371 0.91622 0.91482 0.76765 0.88624 0.88542 0.91960 0.90636 0.91314 0.94654 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 14.32 29.02 0.42 -0.66 16 2 C -0.15 -0.86 9.52 -36.02 -0.34 -1.20 16 3 C -0.09 -0.47 5.66 -27.88 -0.16 -0.63 16 4 C -0.12 -0.67 4.45 -26.73 -0.12 -0.79 16 5 C 0.06 0.34 5.27 -3.83 -0.02 0.32 16 6 N -0.54 -3.88 4.81 -234.66 -1.13 -5.01 16 7 C 0.06 0.39 5.18 -3.83 -0.02 0.37 16 8 C -0.10 -0.76 4.88 -26.65 -0.13 -0.89 16 9 C -0.07 -0.58 0.53 -154.39 -0.08 -0.67 16 10 C -0.15 -1.12 7.73 37.16 0.29 -0.83 16 11 C 0.13 1.48 4.57 -4.04 -0.02 1.46 16 12 N -0.73 -9.29 4.98 -60.30 -0.30 -9.59 16 13 C 0.53 9.44 7.85 -10.98 -0.09 9.35 16 14 O -0.52 -11.36 15.86 5.55 0.09 -11.27 16 15 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 21 Si 0.86 21.92 27.74 -169.99 -4.72 17.20 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 25 C -0.11 -0.85 4.68 -26.64 -0.12 -0.98 16 26 C 0.05 0.35 4.60 -3.83 -0.02 0.33 16 27 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 28 H 0.09 0.47 7.84 -52.48 -0.41 0.06 16 29 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 30 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.41 6.21 -51.93 -0.32 0.09 16 34 H 0.03 0.19 8.08 -51.93 -0.42 -0.23 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 0.25 6.51 -51.93 -0.34 -0.09 16 37 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.41 4.93 -51.93 -0.26 0.15 16 42 H 0.06 0.45 6.87 -51.92 -0.36 0.10 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.40 4.03 6.19 -40.82 -0.25 3.78 16 46 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.53 6.95 -51.93 -0.36 0.17 16 51 H 0.04 0.26 6.52 -51.93 -0.34 -0.08 16 52 H 0.08 0.57 5.81 -51.93 -0.30 0.27 16 LS Contribution 411.61 15.07 6.20 6.20 Total: -1.00 -33.30 411.61 -10.31 -43.61 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -9.26 Total: -0.55 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 0.02 Total: -9.09 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.65 Total: -40.48 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.30 -10.31 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724277393.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.057 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds