Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47224 * 120.00431 * 2 1 3 5 5 C 1.53002 * 109.46933 * 175.00145 * 4 2 1 6 6 N 1.46900 * 109.47033 * 179.97438 * 5 4 2 7 7 C 1.50148 * 111.00012 * 303.88710 * 6 5 4 8 8 C 1.54243 * 106.17322 * 214.24401 * 7 6 5 9 9 C 1.50961 * 103.69879 * 354.07533 * 8 7 6 10 10 N 1.46500 * 110.00764 * 277.80394 * 9 8 7 11 11 C 1.34774 * 119.99961 * 280.46614 * 10 9 8 12 12 O 1.21281 * 120.00138 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99738 * 179.97438 * 11 10 9 14 14 S 1.80996 * 109.47055 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00259 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00080 * 0.28240 * 15 14 13 17 17 C 1.38805 * 120.00285 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99709 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99953 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46986 * 90.00492 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00509 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00339 * 19 17 15 23 23 C 1.50651 * 124.38063 * 144.14377 * 9 8 7 24 24 C 1.55800 * 104.30666 * 215.18965 * 23 9 8 25 25 C 1.56269 * 105.87152 * 7.01888 * 24 23 9 26 26 C 1.44516 * 110.99975 * 189.99484 * 6 5 4 27 27 H 1.09005 * 109.38056 * 50.91683 * 26 6 5 28 28 H 1.09004 * 109.47195 * 299.99221 * 1 2 3 29 29 H 1.09000 * 109.47331 * 59.99932 * 1 2 3 30 30 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46468 * 240.00626 * 2 1 3 32 32 H 1.09002 * 109.46825 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47258 * 300.00113 * 3 2 1 34 34 H 1.08994 * 109.47140 * 60.00427 * 3 2 1 35 35 H 1.08997 * 109.47328 * 54.99952 * 4 2 1 36 36 H 1.08997 * 109.46848 * 294.99986 * 4 2 1 37 37 H 1.08997 * 109.47271 * 59.99772 * 5 4 2 38 38 H 1.09006 * 109.46770 * 299.99934 * 5 4 2 39 39 H 1.09003 * 110.08940 * 333.39266 * 7 6 5 40 40 H 1.09004 * 110.08135 * 94.90106 * 7 6 5 41 41 H 1.08995 * 110.05815 * 235.59870 * 8 7 6 42 42 H 1.09005 * 110.64068 * 112.83110 * 8 7 6 43 43 H 0.97003 * 119.99684 * 100.46434 * 10 9 8 44 44 H 1.09005 * 109.46991 * 60.00046 * 13 11 10 45 45 H 1.08994 * 109.47632 * 300.00284 * 13 11 10 46 46 H 0.97000 * 119.99481 * 179.97438 * 18 17 15 47 47 H 1.09009 * 110.46259 * 333.89415 * 23 9 8 48 48 H 1.08994 * 110.46442 * 96.35187 * 23 9 8 49 49 H 1.08997 * 110.17572 * 126.12350 * 24 23 9 50 50 H 1.09000 * 110.17194 * 247.92222 * 24 23 9 51 51 H 1.09000 * 110.95904 * 143.00341 * 25 24 23 52 52 H 1.08993 * 110.95959 * 266.70426 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8310 1.1878 6 7 4.0547 -1.5231 2.3875 7 6 3.5956 -0.8263 3.6357 8 6 4.7334 -0.9925 4.6638 9 6 5.7107 -1.9104 3.9700 10 7 5.2844 -3.3037 4.1221 11 6 5.5308 -3.9621 5.2720 12 8 6.1058 -3.4012 6.1807 13 6 5.0917 -5.3952 5.4287 14 16 5.5638 -5.9948 7.0698 15 6 4.9467 -7.6429 6.9827 16 1 4.4561 -7.9891 6.0849 17 6 5.0967 -8.4984 8.0654 18 7 5.6995 -8.0782 9.1575 19 14 4.4431 -10.2459 7.9726 20 1 5.4991 -11.1415 7.4361 21 1 4.0514 -10.7006 9.3309 22 1 3.2591 -10.2847 7.0771 23 6 7.2085 -1.8125 4.0994 24 6 7.7434 -2.2111 2.6914 25 6 6.4831 -2.3418 1.7767 26 6 5.4945 -1.4414 2.4810 27 1 5.8057 -0.4025 2.3708 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6055 -1.7198 1.2950 36 1 1.7517 -0.1584 2.1369 37 1 3.9995 0.1675 1.1419 38 1 3.8532 -1.3939 0.3000 39 1 3.4253 0.2312 3.4332 40 1 2.6807 -1.2879 4.0072 41 1 4.3504 -1.4539 5.5740 42 1 5.1967 -0.0305 4.8831 43 1 4.8248 -3.7524 3.3952 44 1 5.5726 -6.0079 4.6661 45 1 4.0094 -5.4581 5.3159 46 1 5.8040 -8.6760 9.9142 47 1 7.5040 -0.7923 4.3446 48 1 7.5716 -2.5062 4.8576 49 1 8.4071 -1.4361 2.3082 50 1 8.2693 -3.1643 2.7451 51 1 6.6924 -1.9792 0.7703 52 1 6.1247 -3.3708 1.7516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725585136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = -55.372177 kcal Electronic energy + Delta-G solvation = -28367.596397 eV Core-core repulsion = 24684.985892 eV Total energy + Delta-G solvation = -3682.610505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.37695 -39.79149 -37.99745 -35.97482 -34.59295 -34.44904 -32.76020 -30.54888 -29.99014 -28.01935 -27.79354 -27.62779 -27.24393 -24.11640 -22.39579 -22.26025 -20.82960 -20.71830 -20.03438 -19.80269 -17.83292 -17.47094 -16.87614 -16.72248 -16.65059 -16.56809 -16.06578 -15.68616 -15.48787 -15.05184 -14.85147 -14.80509 -14.50599 -14.27539 -14.04380 -13.86267 -13.58376 -13.31171 -13.15724 -13.09329 -12.91963 -12.89765 -12.78674 -12.61731 -12.46009 -12.35735 -12.20593 -12.06613 -11.82126 -11.71502 -11.60176 -11.54226 -11.44335 -11.37830 -11.13882 -11.08447 -10.58511 -10.25907 -9.98516 -9.41997 -8.64618 -8.34215 -6.11396 1.28112 1.42072 1.47446 1.58455 1.73384 2.26511 2.32072 2.73639 2.99598 3.12121 3.35406 3.67966 3.88810 3.94676 3.96719 4.01889 4.06813 4.12670 4.17706 4.26412 4.31676 4.32484 4.37738 4.41843 4.52748 4.59327 4.61648 4.70509 4.73179 4.77764 4.82513 4.85334 4.86686 4.96428 4.99004 5.03730 5.07128 5.13848 5.18097 5.18915 5.21593 5.28521 5.34494 5.39740 5.42026 5.50227 5.54621 5.71039 5.84774 6.16588 6.20225 6.66067 7.07016 7.38101 8.74941 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.002502 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.645373 B =11186.518048 C =12347.262121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.109 4.109 5 C 0.048 3.952 6 N -0.504 5.504 7 C 0.048 3.952 8 C -0.129 4.129 9 C 0.159 3.841 10 N -0.689 5.689 11 C 0.536 3.464 12 O -0.560 6.560 13 C -0.129 4.129 14 S -0.145 6.145 15 C -0.547 4.547 16 H 0.080 0.920 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.259 1.259 23 C -0.126 4.126 24 C -0.112 4.112 25 C -0.097 4.097 26 C 0.055 3.945 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.411 0.589 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.271 0.729 47 H 0.082 0.918 48 H 0.052 0.948 49 H 0.086 0.914 50 H 0.059 0.941 51 H 0.089 0.911 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 19.358 -23.731 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.080 4.080 6 N -0.228 5.228 7 C -0.079 4.079 8 C -0.168 4.168 9 C 0.073 3.927 10 N -0.343 5.343 11 C 0.322 3.678 12 O -0.438 6.438 13 C -0.280 4.280 14 S 0.082 5.918 15 C -0.695 4.695 16 H 0.098 0.902 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.183 1.183 23 C -0.165 4.165 24 C -0.150 4.150 25 C -0.135 4.135 26 C -0.055 4.055 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.249 0.751 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.105 0.895 50 H 0.078 0.922 51 H 0.108 0.892 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.787 19.727 -22.139 30.036 hybrid contribution -0.851 -1.101 -0.587 1.510 sum -5.638 18.626 -22.725 29.919 Atomic orbital electron populations 1.21832 0.95103 1.01709 1.01831 1.21064 0.95823 0.96402 0.97915 1.21887 1.01130 0.95704 1.01778 1.21632 0.94313 1.00688 0.98089 1.22415 0.95719 0.97040 0.92783 1.64515 1.05757 1.50230 1.02309 1.23306 0.97672 0.97961 0.88967 1.21942 0.96550 0.99843 0.98471 1.21008 0.93460 0.81136 0.97117 1.45693 1.59937 1.12753 1.15886 1.19885 0.78287 0.87200 0.82430 1.90659 1.42508 1.69222 1.41415 1.23364 1.05140 0.96404 1.03102 1.85486 1.77742 1.13498 1.15042 1.23202 1.44085 0.97844 1.04325 0.90217 1.26123 0.94993 1.04141 0.93909 1.70182 1.41472 1.38112 1.04962 0.84964 0.78842 0.76257 0.77982 1.19249 1.20197 1.18318 1.21905 0.93517 1.02518 0.98539 1.22816 0.97513 1.01971 0.92680 1.21786 0.93243 0.99635 0.98822 1.22853 0.89293 0.99417 0.93979 0.91581 0.92986 0.92213 0.92902 0.90941 0.92398 0.92385 0.93047 0.92050 0.92229 0.93636 0.90139 0.91504 0.90616 0.93073 0.89498 0.75131 0.87917 0.88087 0.92009 0.89950 0.92891 0.89491 0.92249 0.89244 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.19 71.98 0.66 -0.89 16 2 C -0.09 -0.96 2.92 -10.79 -0.03 -0.99 16 3 C -0.15 -1.38 8.95 71.98 0.64 -0.73 16 4 C -0.11 -1.36 4.51 30.59 0.14 -1.22 16 5 C 0.05 0.60 4.68 86.30 0.40 1.01 16 6 N -0.50 -8.30 4.88 -859.21 -4.19 -12.49 16 7 C 0.05 0.86 5.33 86.09 0.46 1.32 16 8 C -0.13 -2.99 6.21 30.35 0.19 -2.80 16 9 C 0.16 3.76 0.52 3.81 0.00 3.76 16 10 N -0.69 -19.03 4.20 -421.99 -1.77 -20.81 16 11 C 0.54 20.46 7.11 87.66 0.62 21.09 16 12 O -0.56 -25.89 14.01 -3.03 -0.04 -25.93 16 13 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 14 S -0.14 -8.21 20.57 -56.49 -1.16 -9.37 16 15 C -0.55 -31.90 9.50 67.96 0.65 -31.25 16 16 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 19 Si 1.00 44.34 29.55 68.60 2.03 46.36 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 C -0.13 -3.10 6.04 30.80 0.19 -2.91 16 24 C -0.11 -2.04 6.92 32.70 0.23 -1.81 16 25 C -0.10 -1.50 6.45 31.12 0.20 -1.30 16 26 C 0.05 0.91 1.89 46.38 0.09 1.00 16 27 H 0.07 1.00 7.90 -2.38 -0.02 0.98 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.51 6.57 -2.39 -0.02 0.50 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.79 6.83 -2.39 -0.02 0.78 16 37 H 0.05 0.52 6.33 -2.39 -0.02 0.51 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 0.98 7.42 -2.39 -0.02 0.96 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.53 7.74 -2.39 -0.02 1.51 16 42 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.41 9.86 7.48 -92.71 -0.69 9.17 16 44 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 45 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 47 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 48 H 0.05 1.77 6.07 -2.39 -0.01 1.75 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.07 1.21 7.22 -2.39 -0.02 1.19 16 Total: -1.00 -72.94 409.56 0.68 -72.26 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.19 Total: 25.79 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 5.34 Total: -19.43 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -5.68 Total: -89.68 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -72.94 0.68 -72.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725585136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.887 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds