Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47028 * 2 1 4 4 C 1.53002 * 109.47004 * 305.21561 * 3 2 1 5 5 C 1.52997 * 109.47050 * 295.13563 * 4 3 2 6 6 C 1.52995 * 109.47186 * 65.21651 * 3 2 1 7 7 N 1.46896 * 109.47111 * 64.99859 * 6 3 2 8 8 C 1.46971 * 111.00192 * 170.00187 * 7 6 3 9 9 C 1.53764 * 108.95736 * 180.39130 * 8 7 6 10 10 H 1.09005 * 112.29297 * 187.30966 * 9 8 7 11 11 C 1.54706 * 108.24110 * 311.95871 * 9 8 7 12 12 C 1.54921 * 104.52205 * 87.50937 * 11 9 8 13 13 C 1.54705 * 104.52102 * 0.02562 * 12 11 9 14 14 H 1.08996 * 112.93470 * 148.19780 * 13 12 11 15 15 C 1.46972 * 110.99959 * 45.24981 * 7 6 3 16 16 N 1.48436 * 106.97875 * 63.52456 * 9 8 7 17 17 C 1.34777 * 128.45141 * 108.38091 * 16 9 8 18 18 O 1.21284 * 119.99723 * 0.02562 * 17 16 9 19 19 C 1.50701 * 120.00150 * 180.27884 * 17 16 9 20 20 S 1.80998 * 109.47264 * 179.72580 * 19 17 16 21 21 C 1.76197 * 99.99944 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00342 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00040 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99811 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00280 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46980 * 90.00141 * 25 23 21 27 27 H 1.48506 * 109.47233 * 210.00368 * 25 23 21 28 28 H 1.48508 * 109.46815 * 330.00093 * 25 23 21 29 29 H 1.09002 * 109.46603 * 305.58881 * 1 2 3 30 30 H 1.09004 * 109.46970 * 65.58979 * 1 2 3 31 31 H 1.08998 * 109.46689 * 185.59027 * 1 2 3 32 32 H 1.08996 * 109.46794 * 239.99946 * 2 1 3 33 33 H 1.08995 * 109.47221 * 120.00093 * 2 1 3 34 34 H 1.08992 * 109.46619 * 185.21764 * 3 2 1 35 35 H 1.09008 * 109.46810 * 55.13509 * 4 3 2 36 36 H 1.08995 * 109.46969 * 175.12980 * 4 3 2 37 37 H 1.08999 * 109.47353 * 305.89944 * 5 4 3 38 38 H 1.08999 * 109.47473 * 65.90289 * 5 4 3 39 39 H 1.09001 * 109.46667 * 185.90130 * 5 4 3 40 40 H 1.09000 * 109.47384 * 305.00272 * 6 3 2 41 41 H 1.09003 * 109.47300 * 185.00127 * 6 3 2 42 42 H 1.08997 * 109.55515 * 60.54134 * 8 7 6 43 43 H 1.09001 * 109.63857 * 300.28302 * 8 7 6 44 44 H 1.08998 * 110.40206 * 206.42073 * 11 9 8 45 45 H 1.08998 * 110.40237 * 328.84016 * 11 9 8 46 46 H 1.08997 * 110.35768 * 241.30226 * 12 11 9 47 47 H 1.08998 * 110.66025 * 118.84929 * 12 11 9 48 48 H 1.08995 * 109.55548 * 299.45427 * 15 7 6 49 49 H 1.08997 * 109.55663 * 59.66637 * 15 7 6 50 50 H 1.09001 * 109.46995 * 299.72583 * 19 17 16 51 51 H 1.08997 * 109.47355 * 59.72307 * 19 17 16 52 52 H 0.97002 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.4258 2.2006 -1.1785 5 6 1.9233 1.5923 -2.4912 6 6 1.6400 2.1249 1.3096 7 7 2.3253 1.4704 2.4320 8 6 2.1558 2.2392 3.6731 9 6 2.8976 1.5196 4.8117 10 1 2.7031 1.9733 5.7836 11 6 2.5096 0.0225 4.7721 12 6 3.5231 -0.6156 3.7893 13 6 4.4189 0.5619 3.3372 14 1 5.4430 0.2578 3.1209 15 6 3.7447 1.2459 2.1238 16 7 4.3401 1.5270 4.4620 17 6 5.3353 2.2405 5.0250 18 8 5.0956 2.9959 5.9430 19 6 6.7451 2.1038 4.5102 20 16 7.8415 3.1876 5.4585 21 6 9.3769 2.8359 4.6690 22 1 9.4161 2.1262 3.8559 23 6 10.5363 3.4709 5.0922 24 7 10.4888 4.3355 6.0836 25 14 12.1641 3.0987 4.2548 26 1 12.3621 4.0349 3.1193 27 1 13.2716 3.2626 5.2305 28 1 12.1526 1.7024 3.7490 29 1 -0.3632 0.5981 0.8358 30 1 -0.3633 0.4247 -0.9358 31 1 -0.3633 -1.0228 0.1001 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.1260 1.4439 -0.0935 35 1 0.3393 2.1257 -1.1321 36 1 1.7201 3.2490 -1.1292 37 1 3.0131 1.5718 -2.4922 38 1 1.5407 0.5764 -2.5890 39 1 1.5706 2.1955 -3.3278 40 1 0.5615 2.0452 1.4462 41 1 1.9249 3.1764 1.2732 42 1 1.0957 2.3108 3.9161 43 1 2.5688 3.2396 3.5436 44 1 2.6060 -0.4213 5.7630 45 1 1.4926 -0.0968 4.3986 46 1 3.0021 -1.0471 2.9347 47 1 4.1206 -1.3756 4.2927 48 1 3.8305 0.6009 1.2493 49 1 4.2297 2.2009 1.9219 50 1 7.0730 1.0700 4.6190 51 1 6.7765 2.3860 3.4578 52 1 11.2991 4.7791 6.3796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731421863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -33.265639 kcal Electronic energy + Delta-G solvation = -28793.111060 eV Core-core repulsion = 25111.459166 eV Total energy + Delta-G solvation = -3681.651894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95439 -38.63992 -37.49653 -34.59312 -32.43186 -31.92033 -31.41052 -31.20130 -28.93863 -28.62099 -25.96249 -25.45953 -24.77151 -23.88940 -22.79801 -21.33597 -20.65979 -19.12322 -18.47180 -17.67771 -16.94712 -16.35877 -15.85541 -15.50979 -15.21461 -14.89795 -14.80743 -14.75019 -14.42098 -13.91007 -13.74839 -13.62068 -13.28029 -13.18889 -13.12898 -12.83815 -12.63106 -12.61598 -12.34844 -12.19525 -12.02413 -11.74636 -11.63960 -11.34488 -11.29320 -11.15825 -11.06480 -11.02182 -10.97983 -10.75617 -10.69606 -10.59285 -10.43222 -10.41161 -9.81351 -9.35713 -9.06940 -8.59196 -8.39499 -8.23288 -6.50357 -6.21795 -3.92435 2.89378 3.06901 3.21919 3.25425 3.29947 3.60282 3.65782 4.19974 4.39074 4.47186 4.55250 4.65754 4.67128 4.77821 4.83540 4.96851 5.02920 5.04707 5.08920 5.13319 5.15826 5.20979 5.27076 5.32408 5.37518 5.44396 5.48575 5.52373 5.56240 5.60966 5.62686 5.66189 5.70582 5.72008 5.76605 5.78720 5.86529 5.88579 5.89311 5.95476 5.99862 6.03195 6.12275 6.14152 6.18055 6.25685 6.47085 6.85754 6.88145 7.59181 7.80899 8.34953 8.59176 9.23358 10.85658 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002749 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.292737 B =10184.871836 C =11349.787657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.151 4.151 6 C 0.058 3.942 7 N -0.526 5.526 8 C 0.048 3.952 9 C 0.134 3.866 10 H 0.103 0.897 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.128 3.872 14 H 0.103 0.897 15 C 0.040 3.960 16 N -0.628 5.628 17 C 0.554 3.446 18 O -0.518 6.518 19 C -0.145 4.145 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.039 0.961 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.890 -10.720 -14.051 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.112 4.112 4 C -0.160 4.160 5 C -0.209 4.209 6 C -0.070 4.070 7 N -0.251 5.251 8 C -0.081 4.081 9 C 0.030 3.970 10 H 0.121 0.879 11 C -0.151 4.151 12 C -0.151 4.151 13 C 0.023 3.977 14 H 0.121 0.879 15 C -0.089 4.089 16 N -0.364 5.364 17 C 0.343 3.657 18 O -0.392 6.392 19 C -0.296 4.296 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.108 0.892 49 H 0.057 0.943 50 H 0.106 0.894 51 H 0.104 0.896 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.246 -9.834 -12.424 27.311 hybrid contribution 1.761 -0.172 -1.809 2.530 sum -20.485 -10.006 -14.233 26.876 Atomic orbital electron populations 1.21838 0.96239 1.01265 1.01513 1.21475 0.95921 0.95654 1.02010 1.21383 1.00550 0.95780 0.93483 1.21602 1.00883 0.99232 0.94294 1.21776 1.01239 1.00910 0.96934 1.22243 0.99403 0.95527 0.89824 1.62034 1.12230 1.48158 1.02669 1.22598 1.00424 0.95135 0.89958 1.22309 0.80405 0.96506 0.97827 0.87907 1.22476 0.99854 0.93705 0.99075 1.22468 0.96805 0.96255 0.99547 1.22662 0.99703 0.89229 0.86078 0.87898 1.22926 0.88141 1.00002 0.97824 1.49434 1.07419 1.43928 1.35662 1.19987 0.85403 0.78585 0.81696 1.90704 1.83327 1.36708 1.28475 1.23489 0.95013 1.06214 1.04880 1.85402 0.99826 1.52904 1.45254 1.22850 0.93373 1.30071 1.21960 0.90975 1.24994 0.99009 0.94544 0.95044 1.70021 1.29122 1.25668 1.25484 0.86169 0.81534 0.78791 0.79014 1.20281 1.20730 1.19667 0.92368 0.93049 0.93267 0.92581 0.90722 0.90790 0.91508 0.92337 0.92770 0.92537 0.93012 0.90333 0.95054 0.89902 0.94278 0.91877 0.89939 0.89916 0.91765 0.89184 0.94269 0.89380 0.89583 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.11 37.16 0.34 -0.59 16 2 C -0.11 -0.74 5.00 -26.72 -0.13 -0.88 16 3 C -0.09 -0.67 1.65 -90.62 -0.15 -0.81 16 4 C -0.12 -0.81 5.07 -26.73 -0.14 -0.95 16 5 C -0.15 -0.96 9.52 37.16 0.35 -0.60 16 6 C 0.06 0.47 4.56 -3.83 -0.02 0.45 16 7 N -0.53 -4.81 3.24 -232.87 -0.75 -5.56 16 8 C 0.05 0.51 5.06 -3.39 -0.02 0.49 16 9 C 0.13 1.64 4.15 -65.57 -0.27 1.37 16 10 H 0.10 1.40 7.95 -51.93 -0.41 0.98 16 11 C -0.11 -1.09 6.19 -24.82 -0.15 -1.25 16 12 C -0.11 -1.05 6.19 -24.82 -0.15 -1.20 16 13 C 0.13 1.45 4.08 -65.05 -0.27 1.18 16 14 H 0.10 1.16 7.46 -51.93 -0.39 0.77 16 15 C 0.04 0.40 4.10 -2.86 -0.01 0.39 16 16 N -0.63 -9.33 2.76 -152.23 -0.42 -9.75 16 17 C 0.55 11.00 7.95 -10.98 -0.09 10.92 16 18 O -0.52 -12.31 16.20 5.55 0.09 -12.22 16 19 C -0.15 -3.05 5.15 36.01 0.19 -2.87 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.38 6.24 -51.93 -0.32 0.05 16 30 H 0.05 0.30 6.58 -51.93 -0.34 -0.04 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 6.96 -51.93 -0.36 0.00 16 33 H 0.07 0.55 7.12 -51.93 -0.37 0.18 16 34 H 0.07 0.60 6.02 -51.93 -0.31 0.28 16 35 H 0.07 0.42 6.19 -51.92 -0.32 0.10 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.34 6.98 -51.93 -0.36 -0.03 16 39 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.59 6.25 -51.93 -0.32 0.27 16 41 H 0.03 0.30 8.06 -51.93 -0.42 -0.12 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 46 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.76 5.62 -51.93 -0.29 0.47 16 49 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 1.73 8.09 -51.92 -0.42 1.31 16 51 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 52 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -33.26 402.30 -11.07 -44.33 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -9.23 Total: -2.44 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.32 Total: -7.40 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.44 Total: -40.94 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.26 -11.07 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731421863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.066 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds