Wall clock time and date at job start Sat Apr 11 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47028 * 2 1 4 4 C 1.53002 * 109.47004 * 305.21561 * 3 2 1 5 5 C 1.52997 * 109.47050 * 295.13563 * 4 3 2 6 6 C 1.52995 * 109.47186 * 65.21651 * 3 2 1 7 7 N 1.46896 * 109.47111 * 64.99859 * 6 3 2 8 8 C 1.46971 * 111.00192 * 170.00187 * 7 6 3 9 9 C 1.53764 * 108.95736 * 180.39130 * 8 7 6 10 10 H 1.09005 * 112.29297 * 187.30966 * 9 8 7 11 11 C 1.54706 * 108.24110 * 311.95871 * 9 8 7 12 12 C 1.54921 * 104.52205 * 87.50937 * 11 9 8 13 13 C 1.54705 * 104.52102 * 0.02562 * 12 11 9 14 14 H 1.08996 * 112.93470 * 148.19780 * 13 12 11 15 15 C 1.46972 * 110.99959 * 45.24981 * 7 6 3 16 16 N 1.48436 * 106.97875 * 63.52456 * 9 8 7 17 17 C 1.34777 * 128.45141 * 108.38091 * 16 9 8 18 18 O 1.21284 * 119.99723 * 0.02562 * 17 16 9 19 19 C 1.50701 * 120.00150 * 180.27884 * 17 16 9 20 20 S 1.80998 * 109.47264 * 179.72580 * 19 17 16 21 21 C 1.76197 * 99.99944 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00342 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00040 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99811 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00280 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46980 * 90.00141 * 25 23 21 27 27 H 1.48506 * 109.47233 * 210.00368 * 25 23 21 28 28 H 1.48508 * 109.46815 * 330.00093 * 25 23 21 29 29 H 1.09002 * 109.46603 * 305.58881 * 1 2 3 30 30 H 1.09004 * 109.46970 * 65.58979 * 1 2 3 31 31 H 1.08998 * 109.46689 * 185.59027 * 1 2 3 32 32 H 1.08996 * 109.46794 * 239.99946 * 2 1 3 33 33 H 1.08995 * 109.47221 * 120.00093 * 2 1 3 34 34 H 1.08992 * 109.46619 * 185.21764 * 3 2 1 35 35 H 1.09008 * 109.46810 * 55.13509 * 4 3 2 36 36 H 1.08995 * 109.46969 * 175.12980 * 4 3 2 37 37 H 1.08999 * 109.47353 * 305.89944 * 5 4 3 38 38 H 1.08999 * 109.47473 * 65.90289 * 5 4 3 39 39 H 1.09001 * 109.46667 * 185.90130 * 5 4 3 40 40 H 1.09000 * 109.47384 * 305.00272 * 6 3 2 41 41 H 1.09003 * 109.47300 * 185.00127 * 6 3 2 42 42 H 1.08997 * 109.55515 * 60.54134 * 8 7 6 43 43 H 1.09001 * 109.63857 * 300.28302 * 8 7 6 44 44 H 1.08998 * 110.40206 * 206.42073 * 11 9 8 45 45 H 1.08998 * 110.40237 * 328.84016 * 11 9 8 46 46 H 1.08997 * 110.35768 * 241.30226 * 12 11 9 47 47 H 1.08998 * 110.66025 * 118.84929 * 12 11 9 48 48 H 1.08995 * 109.55548 * 299.45427 * 15 7 6 49 49 H 1.08997 * 109.55663 * 59.66637 * 15 7 6 50 50 H 1.09001 * 109.46995 * 299.72583 * 19 17 16 51 51 H 1.08997 * 109.47355 * 59.72307 * 19 17 16 52 52 H 0.97002 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.4258 2.2006 -1.1785 5 6 1.9233 1.5923 -2.4912 6 6 1.6400 2.1249 1.3096 7 7 2.3253 1.4704 2.4320 8 6 2.1558 2.2392 3.6731 9 6 2.8976 1.5196 4.8117 10 1 2.7031 1.9733 5.7836 11 6 2.5096 0.0225 4.7721 12 6 3.5231 -0.6156 3.7893 13 6 4.4189 0.5619 3.3372 14 1 5.4430 0.2578 3.1209 15 6 3.7447 1.2459 2.1238 16 7 4.3401 1.5270 4.4620 17 6 5.3353 2.2405 5.0250 18 8 5.0956 2.9959 5.9430 19 6 6.7451 2.1038 4.5102 20 16 7.8415 3.1876 5.4585 21 6 9.3769 2.8359 4.6690 22 1 9.4161 2.1262 3.8559 23 6 10.5363 3.4709 5.0922 24 7 10.4888 4.3355 6.0836 25 14 12.1641 3.0987 4.2548 26 1 12.3621 4.0349 3.1193 27 1 13.2716 3.2626 5.2305 28 1 12.1526 1.7024 3.7490 29 1 -0.3632 0.5981 0.8358 30 1 -0.3633 0.4247 -0.9358 31 1 -0.3633 -1.0228 0.1001 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.1260 1.4439 -0.0935 35 1 0.3393 2.1257 -1.1321 36 1 1.7201 3.2490 -1.1292 37 1 3.0131 1.5718 -2.4922 38 1 1.5407 0.5764 -2.5890 39 1 1.5706 2.1955 -3.3278 40 1 0.5615 2.0452 1.4462 41 1 1.9249 3.1764 1.2732 42 1 1.0957 2.3108 3.9161 43 1 2.5688 3.2396 3.5436 44 1 2.6060 -0.4213 5.7630 45 1 1.4926 -0.0968 4.3986 46 1 3.0021 -1.0471 2.9347 47 1 4.1206 -1.3756 4.2927 48 1 3.8305 0.6009 1.2493 49 1 4.2297 2.2009 1.9219 50 1 7.0730 1.0700 4.6190 51 1 6.7765 2.3860 3.4578 52 1 11.2991 4.7791 6.3796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731421863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:05 Heat of formation + Delta-G solvation = -52.466444 kcal Electronic energy + Delta-G solvation = -28793.943669 eV Core-core repulsion = 25111.459166 eV Total energy + Delta-G solvation = -3682.484503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98200 -39.78388 -38.51929 -35.43327 -34.61689 -33.07933 -32.29941 -31.85572 -30.35795 -29.40406 -27.71328 -26.70439 -25.62361 -24.52301 -23.58768 -22.41008 -21.58755 -20.10500 -19.73906 -19.15238 -18.32380 -17.28978 -16.91458 -16.69269 -16.43563 -16.36085 -16.27466 -15.73958 -15.58213 -15.13594 -14.78631 -14.61711 -14.47160 -14.25702 -13.93484 -13.70602 -13.64738 -13.51696 -13.42392 -13.22582 -13.13947 -12.91327 -12.76805 -12.64251 -12.51880 -12.27158 -12.20034 -12.04497 -11.86717 -11.82217 -11.71799 -11.32257 -11.20898 -11.17080 -11.10396 -11.04153 -10.96056 -10.32826 -9.77860 -9.30542 -8.72123 -8.37431 -6.16869 1.19763 1.40884 1.41955 1.51614 1.54137 2.01622 2.24418 2.82842 2.96663 3.19108 3.52748 3.61374 3.79562 3.87235 3.95474 3.99575 4.00998 4.10481 4.16599 4.20351 4.33122 4.39412 4.43688 4.50387 4.53159 4.58078 4.65209 4.66010 4.71382 4.77092 4.81235 4.85338 4.86545 4.94117 4.98357 5.08952 5.10364 5.16683 5.19562 5.22424 5.27663 5.37908 5.38347 5.42462 5.48137 5.53934 5.62096 5.74299 6.01455 6.04926 6.16797 6.47258 7.03331 7.07979 8.72022 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.002749 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.292737 B =10184.871836 C =11349.787657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.088 4.088 4 C -0.120 4.120 5 C -0.150 4.150 6 C 0.060 3.940 7 N -0.511 5.511 8 C 0.055 3.945 9 C 0.124 3.876 10 H 0.084 0.916 11 C -0.102 4.102 12 C -0.103 4.103 13 C 0.117 3.883 14 H 0.106 0.894 15 C 0.045 3.955 16 N -0.621 5.621 17 C 0.551 3.449 18 O -0.570 6.570 19 C -0.117 4.117 20 S -0.150 6.150 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.257 1.257 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.015 0.985 42 H 0.107 0.893 43 H 0.008 0.992 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.068 0.932 48 H 0.115 0.885 49 H 0.013 0.987 50 H 0.105 0.895 51 H 0.099 0.901 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.882 -13.434 -16.572 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.107 4.107 4 C -0.158 4.158 5 C -0.207 4.207 6 C -0.068 4.068 7 N -0.235 5.235 8 C -0.074 4.074 9 C 0.020 3.980 10 H 0.102 0.898 11 C -0.141 4.141 12 C -0.141 4.141 13 C 0.015 3.985 14 H 0.124 0.876 15 C -0.083 4.083 16 N -0.355 5.355 17 C 0.340 3.660 18 O -0.449 6.449 19 C -0.268 4.268 20 S 0.077 5.923 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.180 1.180 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.033 0.967 42 H 0.125 0.875 43 H 0.026 0.974 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.087 0.913 48 H 0.133 0.867 49 H 0.032 0.968 50 H 0.123 0.877 51 H 0.118 0.882 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.288 -12.594 -14.991 30.425 hybrid contribution 1.913 0.649 -1.077 2.290 sum -21.375 -11.945 -16.068 29.287 Atomic orbital electron populations 1.21814 0.95751 1.01498 1.01572 1.21435 0.96266 0.94737 1.02122 1.21331 1.00043 0.96400 0.92910 1.21581 1.01290 0.98631 0.94327 1.21761 1.00882 1.01313 0.96743 1.22290 0.99923 0.94638 0.89922 1.62113 1.11569 1.47430 1.02430 1.22529 1.01292 0.93425 0.90170 1.22574 0.78759 0.98937 0.97685 0.89832 1.22456 1.01110 0.91004 0.99485 1.22471 0.96277 0.95126 1.00242 1.23050 1.00889 0.89386 0.85215 0.87554 1.22910 0.88294 0.99117 0.98016 1.49420 1.07693 1.42809 1.35625 1.19733 0.85858 0.78925 0.81508 1.90676 1.84022 1.39281 1.30924 1.23265 0.94436 1.05070 1.04056 1.85590 1.02512 1.56059 1.48116 1.23170 0.93524 1.30430 1.22198 0.89969 1.26164 1.03430 0.93989 0.95585 1.70189 1.30438 1.26925 1.27258 0.84928 0.75699 0.79344 0.77848 1.19266 1.20171 1.18041 0.92579 0.92798 0.92895 0.92154 0.90888 0.91656 0.90781 0.93303 0.93318 0.91866 0.92735 0.89047 0.96705 0.87463 0.97357 0.91929 0.87673 0.87512 0.91293 0.86718 0.96845 0.87661 0.88230 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.11 71.98 0.66 -0.70 16 2 C -0.11 -1.08 5.00 30.60 0.15 -0.92 16 3 C -0.09 -1.07 1.65 -10.79 -0.02 -1.08 16 4 C -0.12 -1.39 5.07 30.59 0.16 -1.24 16 5 C -0.15 -1.61 9.52 71.98 0.69 -0.92 16 6 C 0.06 0.86 4.56 86.30 0.39 1.26 16 7 N -0.51 -8.28 3.24 -890.68 -2.88 -11.16 16 8 C 0.05 1.12 5.06 86.55 0.44 1.56 16 9 C 0.12 2.96 4.15 45.46 0.19 3.15 16 10 H 0.08 2.34 7.95 -2.38 -0.02 2.32 16 11 C -0.10 -1.71 6.19 31.83 0.20 -1.51 16 12 C -0.10 -1.58 6.19 31.83 0.20 -1.39 16 13 C 0.12 2.44 4.08 45.80 0.19 2.63 16 14 H 0.11 2.16 7.46 -2.39 -0.02 2.15 16 15 C 0.05 0.84 4.10 86.89 0.36 1.19 16 16 N -0.62 -18.37 2.76 -753.93 -2.08 -20.45 16 17 C 0.55 22.56 7.95 87.66 0.70 23.26 16 18 O -0.57 -28.61 16.20 -3.04 -0.05 -28.66 16 19 C -0.12 -5.00 5.15 71.24 0.37 -4.64 16 20 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 21 C -0.55 -31.75 9.50 67.95 0.65 -31.11 16 22 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 25 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 29 H 0.06 0.54 6.24 -2.39 -0.01 0.53 16 30 H 0.05 0.47 6.58 -2.38 -0.02 0.45 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.58 6.96 -2.39 -0.02 0.56 16 33 H 0.07 0.77 7.12 -2.39 -0.02 0.76 16 34 H 0.07 0.92 6.02 -2.39 -0.01 0.91 16 35 H 0.07 0.76 6.19 -2.38 -0.01 0.74 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.60 6.98 -2.39 -0.02 0.58 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 1.14 6.25 -2.39 -0.01 1.12 16 41 H 0.01 0.27 8.06 -2.39 -0.02 0.25 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.01 0.22 8.12 -2.39 -0.02 0.20 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.35 7.84 -2.39 -0.02 1.33 16 46 H 0.11 1.21 7.80 -2.39 -0.02 1.19 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.11 1.61 5.62 -2.39 -0.01 1.60 16 49 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.11 4.09 8.09 -2.39 -0.02 4.07 16 51 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 52 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.87 402.30 2.79 -73.08 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.88 Total: 16.74 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.76 Total: -9.24 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -4.68 Total: -88.13 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -75.87 2.79 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731421863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.612 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds