Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46925 * 2 1 4 4 C 1.53007 * 109.46676 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.46963 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00346 * 46.01578 * 5 4 3 7 7 C 1.53023 * 108.86745 * 187.08786 * 6 5 4 8 8 C 1.52816 * 109.16027 * 299.85941 * 7 6 5 9 9 H 1.08998 * 109.46566 * 177.60445 * 8 7 6 10 10 C 1.53153 * 109.76394 * 57.43357 * 8 7 6 11 11 H 1.09003 * 109.62544 * 64.11571 * 10 8 7 12 12 C 1.53201 * 109.45591 * 184.38792 * 10 8 7 13 13 C 1.54173 * 108.81285 * 61.37892 * 12 10 8 14 14 C 1.53179 * 109.73555 * 298.94160 * 13 12 10 15 15 N 1.46770 * 109.76467 * 297.77645 * 8 7 6 16 16 C 1.34780 * 120.68495 * 354.00689 * 15 8 7 17 17 O 1.21277 * 120.00177 * 352.90117 * 16 15 8 18 18 C 1.50702 * 119.99900 * 172.90484 * 16 15 8 19 19 S 1.80999 * 109.47014 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00155 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99614 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00403 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99915 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00388 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47353 * 89.99448 * 24 22 20 26 26 H 1.48500 * 109.47002 * 210.00051 * 24 22 20 27 27 H 1.48508 * 109.46640 * 329.99986 * 24 22 20 28 28 C 1.46792 * 110.99994 * 169.99730 * 5 4 3 29 29 H 1.09005 * 109.47167 * 300.00402 * 1 2 3 30 30 H 1.09002 * 109.47229 * 59.99583 * 1 2 3 31 31 H 1.08993 * 109.47743 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46843 * 240.00216 * 2 1 3 33 33 H 1.08992 * 109.46972 * 119.99923 * 2 1 3 34 34 H 1.08996 * 109.47440 * 59.99972 * 3 2 1 35 35 H 1.09002 * 109.47243 * 299.99765 * 3 2 1 36 36 H 1.09002 * 109.46902 * 299.99740 * 4 3 2 37 37 H 1.08999 * 109.47158 * 60.00175 * 4 3 2 38 38 H 1.08998 * 109.49144 * 306.22424 * 6 5 4 39 39 H 1.09000 * 109.49468 * 66.30792 * 6 5 4 40 40 H 1.09002 * 109.00545 * 180.35398 * 7 6 5 41 41 H 1.08994 * 110.29514 * 60.15621 * 7 6 5 42 42 H 1.08997 * 109.48393 * 181.93276 * 12 10 8 43 43 H 1.09006 * 109.48019 * 301.97351 * 12 10 8 44 44 H 1.08999 * 109.32473 * 178.85542 * 13 12 10 45 45 H 1.09005 * 109.32293 * 59.02351 * 13 12 10 46 46 H 1.08995 * 109.57804 * 294.62174 * 14 13 12 47 47 H 1.09002 * 109.57929 * 174.21950 * 14 13 12 48 48 H 1.09002 * 109.47386 * 299.99914 * 18 16 15 49 49 H 1.09002 * 109.46928 * 59.99491 * 18 16 15 50 50 H 0.97002 * 120.00799 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.42989 * 293.98010 * 28 5 4 52 52 H 1.09006 * 109.42524 * 53.87350 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.3377 3.6415 0.9856 7 6 3.7575 5.1040 0.8227 8 6 5.2632 5.2226 1.0555 9 1 5.5747 6.2553 0.8989 10 6 6.0116 4.3101 0.0794 11 1 5.8405 4.6485 -0.9426 12 6 7.5111 4.3507 0.3906 13 6 7.7356 3.8296 1.8241 14 6 6.9998 4.7287 2.8224 15 7 5.5865 4.8169 2.4285 16 6 4.6077 4.5315 3.3099 17 8 3.4485 4.7314 3.0147 18 6 4.9537 3.9641 4.6625 19 16 3.4350 3.6913 5.6087 20 6 4.1154 3.0440 7.0995 21 1 5.1846 2.9285 7.1996 22 6 3.2775 2.6824 8.1453 23 7 1.9744 2.8227 8.0232 24 14 3.9989 1.9968 9.7261 25 1 4.2809 3.1115 10.6659 26 1 3.0291 1.0592 10.3469 27 1 5.2605 1.2746 9.4220 28 6 5.5076 2.8735 0.2361 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9285 0.8892 37 1 3.9330 0.9287 -0.8909 38 1 2.2650 3.5577 0.8113 39 1 3.5722 3.2885 1.9898 40 1 3.2277 5.7094 1.5582 41 1 3.5162 5.4572 -0.1798 42 1 8.0479 3.7283 -0.3254 43 1 7.8693 5.3778 0.3202 44 1 8.8026 3.8358 2.0471 45 1 7.3539 2.8116 1.9018 46 1 7.4442 5.7239 2.8140 47 1 7.0744 4.3016 3.8225 48 1 5.4783 3.0171 4.5359 49 1 5.5939 4.6654 5.1977 50 1 1.3887 2.5704 8.7541 51 1 5.7208 2.5227 1.2459 52 1 6.0138 2.2318 -0.4851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731467812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -11.820724 kcal Electronic energy + Delta-G solvation = -29630.103745 eV Core-core repulsion = 25949.381772 eV Total energy + Delta-G solvation = -3680.721973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22186 -38.03403 -37.11309 -34.82142 -33.03432 -32.57952 -32.44518 -29.97201 -28.90946 -28.31817 -25.58296 -25.31426 -24.50309 -23.53408 -22.16610 -21.44033 -20.33015 -20.11767 -18.09825 -17.53883 -16.59445 -16.10084 -15.88389 -15.54065 -15.24093 -15.17704 -14.82480 -14.48053 -14.14020 -13.94894 -13.63278 -13.46008 -13.36376 -13.26491 -13.03002 -12.70680 -12.65585 -12.47453 -12.24997 -11.96790 -11.84521 -11.53266 -11.37837 -11.15837 -11.09857 -11.05453 -11.02163 -10.87034 -10.77612 -10.71084 -10.57408 -10.40692 -10.36571 -9.94644 -9.81735 -9.08616 -8.60872 -8.36032 -8.24985 -7.95411 -6.51852 -6.23905 -3.94202 2.93345 3.01531 3.20281 3.24696 3.28478 3.59005 4.04165 4.18338 4.55954 4.65495 4.66690 4.86047 4.92438 4.99342 5.04195 5.11344 5.11581 5.15611 5.23792 5.33903 5.42225 5.43185 5.46247 5.50220 5.56148 5.60384 5.67502 5.69724 5.71740 5.76772 5.82162 5.83825 5.85310 5.91471 5.93385 5.96858 6.02357 6.05642 6.09955 6.16006 6.17144 6.31078 6.32561 6.38907 6.54405 6.58593 6.85914 7.27897 7.34240 7.57153 7.63447 8.32842 8.59607 9.21698 10.83443 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.004124 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.598746 B = 6787.405099 C = 8901.734431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.059 3.941 5 N -0.546 5.546 6 C 0.049 3.951 7 C -0.116 4.116 8 C 0.154 3.846 9 H 0.066 0.934 10 C -0.095 4.095 11 H 0.085 0.915 12 C -0.113 4.113 13 C -0.140 4.140 14 C 0.109 3.891 15 N -0.613 5.613 16 C 0.530 3.470 17 O -0.499 6.499 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.064 3.936 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.268 0.732 51 H 0.037 0.963 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 0.395 -18.129 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.069 4.069 5 N -0.271 5.271 6 C -0.077 4.077 7 C -0.153 4.153 8 C 0.050 3.950 9 H 0.084 0.916 10 C -0.114 4.114 11 H 0.103 0.897 12 C -0.151 4.151 13 C -0.178 4.178 14 C -0.015 4.015 15 N -0.349 5.349 16 C 0.319 3.681 17 O -0.375 6.375 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.503 5.503 24 Si 0.743 3.257 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.064 4.064 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.078 0.922 51 H 0.056 0.944 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.137 0.869 -18.935 20.254 hybrid contribution 2.192 -1.088 2.143 3.253 sum 9.329 -0.219 -16.792 19.211 Atomic orbital electron populations 1.21758 0.95800 1.01379 1.01982 1.21476 0.96010 0.96835 1.01716 1.21774 0.94621 0.96782 1.02960 1.22053 0.95415 0.89383 1.00062 1.62153 1.03538 1.10360 1.51068 1.22771 0.98467 0.92386 0.94060 1.22079 0.93403 0.98211 1.01621 1.21121 0.96591 0.96728 0.80518 0.91611 1.21563 0.94423 0.95765 0.99680 0.89662 1.21755 0.95519 1.01437 0.96360 1.22182 1.00283 1.00229 0.95094 1.21701 0.80868 0.99885 0.99008 1.48031 1.06067 1.69413 1.11377 1.20126 0.85000 0.77489 0.85493 1.90665 1.19757 1.50597 1.76474 1.23616 1.07465 1.02848 0.96429 1.85316 1.02657 1.83220 1.11975 1.22851 0.95428 1.49262 1.00822 0.91076 1.24967 0.94653 0.95234 0.98584 1.70009 1.02453 1.45156 1.32638 0.86199 0.78807 0.78827 0.81868 1.20238 1.20731 1.19721 1.22059 0.88663 0.96118 0.99606 0.92387 0.92929 0.92980 0.92396 0.92019 0.90937 0.91469 0.95186 0.91500 0.90794 0.91596 0.87401 0.92504 0.91562 0.91660 0.90924 0.91143 0.91528 0.89374 0.89776 0.89528 0.92189 0.94449 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.36 5.93 -26.73 -0.16 -1.51 16 3 C -0.12 -1.54 4.47 -26.73 -0.12 -1.66 16 4 C 0.06 0.75 5.27 -3.82 -0.02 0.73 16 5 N -0.55 -7.38 4.80 -234.67 -1.13 -8.51 16 6 C 0.05 0.77 3.71 -3.81 -0.01 0.76 16 7 C -0.12 -1.67 5.08 -26.81 -0.14 -1.81 16 8 C 0.15 1.94 3.05 -67.80 -0.21 1.73 16 9 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 10 C -0.09 -1.01 2.71 -90.41 -0.24 -1.25 16 11 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.11 -0.96 5.55 -26.01 -0.14 -1.10 16 13 C -0.14 -1.28 5.73 -26.03 -0.15 -1.43 16 14 C 0.11 1.19 6.37 -3.69 -0.02 1.17 16 15 N -0.61 -8.51 2.36 -165.43 -0.39 -8.91 16 16 C 0.53 9.57 6.13 -10.98 -0.07 9.50 16 17 O -0.50 -10.22 9.64 5.56 0.05 -10.16 16 18 C -0.15 -3.05 4.53 36.01 0.16 -2.89 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 24 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.06 0.77 4.21 -3.86 -0.02 0.76 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.06 6.20 -51.93 -0.32 0.73 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.20 5.79 -51.93 -0.30 0.90 16 39 H 0.07 1.25 4.70 -52.07 -0.24 1.00 16 40 H 0.11 1.82 5.85 -52.16 -0.31 1.52 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.01 5.94 -51.93 -0.31 0.70 16 48 H 0.08 1.61 7.97 -51.92 -0.41 1.19 16 49 H 0.09 1.63 7.66 -51.91 -0.40 1.23 16 50 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.04 0.52 5.77 -51.93 -0.30 0.22 16 52 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -31.14 391.48 -11.85 -42.99 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -9.22 Total: 2.37 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.57 Total: -11.01 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.78 Total: -42.58 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.05 Total: -10.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.14 -11.85 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731467812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.172 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds