Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46925 * 2 1 4 4 C 1.53007 * 109.46676 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.46963 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00346 * 46.01578 * 5 4 3 7 7 C 1.53023 * 108.86745 * 187.08786 * 6 5 4 8 8 C 1.52816 * 109.16027 * 299.85941 * 7 6 5 9 9 H 1.08998 * 109.46566 * 177.60445 * 8 7 6 10 10 C 1.53153 * 109.76394 * 57.43357 * 8 7 6 11 11 H 1.09003 * 109.62544 * 64.11571 * 10 8 7 12 12 C 1.53201 * 109.45591 * 184.38792 * 10 8 7 13 13 C 1.54173 * 108.81285 * 61.37892 * 12 10 8 14 14 C 1.53179 * 109.73555 * 298.94160 * 13 12 10 15 15 N 1.46770 * 109.76467 * 297.77645 * 8 7 6 16 16 C 1.34780 * 120.68495 * 354.00689 * 15 8 7 17 17 O 1.21277 * 120.00177 * 352.90117 * 16 15 8 18 18 C 1.50702 * 119.99900 * 172.90484 * 16 15 8 19 19 S 1.80999 * 109.47014 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00155 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99614 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00403 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99915 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00388 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47353 * 89.99448 * 24 22 20 26 26 H 1.48500 * 109.47002 * 210.00051 * 24 22 20 27 27 H 1.48508 * 109.46640 * 329.99986 * 24 22 20 28 28 C 1.46792 * 110.99994 * 169.99730 * 5 4 3 29 29 H 1.09005 * 109.47167 * 300.00402 * 1 2 3 30 30 H 1.09002 * 109.47229 * 59.99583 * 1 2 3 31 31 H 1.08993 * 109.47743 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46843 * 240.00216 * 2 1 3 33 33 H 1.08992 * 109.46972 * 119.99923 * 2 1 3 34 34 H 1.08996 * 109.47440 * 59.99972 * 3 2 1 35 35 H 1.09002 * 109.47243 * 299.99765 * 3 2 1 36 36 H 1.09002 * 109.46902 * 299.99740 * 4 3 2 37 37 H 1.08999 * 109.47158 * 60.00175 * 4 3 2 38 38 H 1.08998 * 109.49144 * 306.22424 * 6 5 4 39 39 H 1.09000 * 109.49468 * 66.30792 * 6 5 4 40 40 H 1.09002 * 109.00545 * 180.35398 * 7 6 5 41 41 H 1.08994 * 110.29514 * 60.15621 * 7 6 5 42 42 H 1.08997 * 109.48393 * 181.93276 * 12 10 8 43 43 H 1.09006 * 109.48019 * 301.97351 * 12 10 8 44 44 H 1.08999 * 109.32473 * 178.85542 * 13 12 10 45 45 H 1.09005 * 109.32293 * 59.02351 * 13 12 10 46 46 H 1.08995 * 109.57804 * 294.62174 * 14 13 12 47 47 H 1.09002 * 109.57929 * 174.21950 * 14 13 12 48 48 H 1.09002 * 109.47386 * 299.99914 * 18 16 15 49 49 H 1.09002 * 109.46928 * 59.99491 * 18 16 15 50 50 H 0.97002 * 120.00799 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.42989 * 293.98010 * 28 5 4 52 52 H 1.09006 * 109.42524 * 53.87350 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.3377 3.6415 0.9856 7 6 3.7575 5.1040 0.8227 8 6 5.2632 5.2226 1.0555 9 1 5.5747 6.2553 0.8989 10 6 6.0116 4.3101 0.0794 11 1 5.8405 4.6485 -0.9426 12 6 7.5111 4.3507 0.3906 13 6 7.7356 3.8296 1.8241 14 6 6.9998 4.7287 2.8224 15 7 5.5865 4.8169 2.4285 16 6 4.6077 4.5315 3.3099 17 8 3.4485 4.7314 3.0147 18 6 4.9537 3.9641 4.6625 19 16 3.4350 3.6913 5.6087 20 6 4.1154 3.0440 7.0995 21 1 5.1846 2.9285 7.1996 22 6 3.2775 2.6824 8.1453 23 7 1.9744 2.8227 8.0232 24 14 3.9989 1.9968 9.7261 25 1 4.2809 3.1115 10.6659 26 1 3.0291 1.0592 10.3469 27 1 5.2605 1.2746 9.4220 28 6 5.5076 2.8735 0.2361 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9285 0.8892 37 1 3.9330 0.9287 -0.8909 38 1 2.2650 3.5577 0.8113 39 1 3.5722 3.2885 1.9898 40 1 3.2277 5.7094 1.5582 41 1 3.5162 5.4572 -0.1798 42 1 8.0479 3.7283 -0.3254 43 1 7.8693 5.3778 0.3202 44 1 8.8026 3.8358 2.0471 45 1 7.3539 2.8116 1.9018 46 1 7.4442 5.7239 2.8140 47 1 7.0744 4.3016 3.8225 48 1 5.4783 3.0171 4.5359 49 1 5.5939 4.6654 5.1977 50 1 1.3887 2.5704 8.7541 51 1 5.7208 2.5227 1.2459 52 1 6.0138 2.2318 -0.4851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731467812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -30.030112 kcal Electronic energy + Delta-G solvation = -29630.893363 eV Core-core repulsion = 25949.381772 eV Total energy + Delta-G solvation = -3681.511591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.38130 -39.27029 -38.15941 -35.83741 -34.61705 -34.08076 -33.65073 -31.10453 -30.19956 -29.42657 -27.69441 -26.35652 -25.55110 -24.54586 -23.16931 -22.38784 -21.60428 -21.17101 -19.79465 -18.90512 -17.93605 -17.23056 -17.09127 -16.90410 -16.70332 -16.39973 -16.18087 -15.77430 -15.47482 -15.00760 -14.83124 -14.71469 -14.42827 -14.36097 -14.31333 -14.14330 -13.76622 -13.58311 -13.31493 -13.17941 -13.11896 -12.92680 -12.86827 -12.64123 -12.50559 -12.31286 -12.15022 -11.92784 -11.85739 -11.76322 -11.70806 -11.50706 -11.42227 -11.29626 -11.16684 -11.01858 -10.28336 -9.97913 -9.47861 -9.13420 -8.67809 -8.37220 -6.14630 1.24172 1.39271 1.43751 1.53920 1.60170 2.13279 2.25425 2.96878 2.99036 3.24293 3.58277 3.73651 3.81481 3.86983 3.98177 4.00261 4.06792 4.18922 4.20758 4.22844 4.30853 4.36035 4.41269 4.42653 4.48825 4.56732 4.59817 4.61391 4.64925 4.70053 4.81837 4.87943 4.89766 4.93592 4.97338 5.04692 5.08636 5.12858 5.14578 5.20305 5.26157 5.27559 5.36481 5.38283 5.39587 5.41962 5.43983 5.75969 6.15049 6.16571 6.22400 6.39665 7.04165 7.24228 8.71839 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.004124 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.598746 B = 6787.405099 C = 8901.734431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.117 4.117 4 C 0.060 3.940 5 N -0.542 5.542 6 C 0.061 3.939 7 C -0.111 4.111 8 C 0.151 3.849 9 H 0.087 0.913 10 C -0.087 4.087 11 H 0.100 0.900 12 C -0.105 4.105 13 C -0.135 4.135 14 C 0.099 3.901 15 N -0.601 5.601 16 C 0.527 3.473 17 O -0.532 6.532 18 C -0.126 4.126 19 S -0.141 6.141 20 C -0.548 4.548 21 H 0.078 0.922 22 C 0.017 3.983 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.259 1.259 28 C 0.062 3.938 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.010 0.990 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.271 0.729 51 H 0.017 0.983 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 0.261 -19.774 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.155 4.155 4 C -0.068 4.068 5 N -0.266 5.266 6 C -0.066 4.066 7 C -0.149 4.149 8 C 0.048 3.952 9 H 0.104 0.896 10 C -0.107 4.107 11 H 0.118 0.882 12 C -0.143 4.143 13 C -0.173 4.173 14 C -0.023 4.023 15 N -0.336 5.336 16 C 0.315 3.685 17 O -0.410 6.410 18 C -0.277 4.277 19 S 0.087 5.913 20 C -0.696 4.696 21 H 0.096 0.904 22 C -0.188 4.188 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.183 1.183 28 C -0.066 4.066 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.118 0.882 50 H 0.080 0.920 51 H 0.035 0.965 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.522 0.744 -20.610 23.152 hybrid contribution 1.180 -1.024 2.547 2.988 sum 11.702 -0.280 -18.062 21.523 Atomic orbital electron populations 1.21758 0.95393 1.02121 1.01610 1.21461 0.96387 0.95760 1.02099 1.21694 0.94652 0.97554 1.01616 1.22108 0.95445 0.89131 1.00118 1.62236 1.04471 1.10339 1.49604 1.22476 0.97808 0.93661 0.92618 1.21926 0.94933 0.96643 1.01411 1.21307 0.95410 0.98479 0.79999 0.89555 1.21565 0.95774 0.93775 0.99546 0.88232 1.21752 0.93580 1.02958 0.95999 1.22158 1.01327 0.98701 0.95094 1.22016 0.79093 1.01809 0.99356 1.48018 1.06593 1.67705 1.11239 1.19822 0.85364 0.77948 0.85396 1.90689 1.21273 1.52187 1.76883 1.23418 1.03574 1.03726 0.96970 1.85453 1.08546 1.83631 1.13695 1.23180 0.95834 1.49352 1.01231 0.90381 1.26074 0.94936 0.95290 1.02529 1.70171 1.04145 1.46353 1.33984 0.85005 0.78296 0.78275 0.76745 1.19161 1.20197 1.18342 1.22175 0.87626 0.97812 0.99003 0.94199 0.91884 0.91666 0.90274 0.93239 0.94142 0.90849 0.97123 0.89183 0.92596 0.95275 0.90424 0.90975 0.89656 0.89847 0.88316 0.92767 0.89092 0.90229 0.89109 0.88171 0.91981 0.96483 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.51 16 2 C -0.12 -2.66 5.93 30.59 0.18 -2.47 16 3 C -0.12 -3.04 4.47 30.60 0.14 -2.91 16 4 C 0.06 1.53 5.27 86.31 0.45 1.99 16 5 N -0.54 -14.48 4.80 -896.36 -4.30 -18.78 16 6 C 0.06 2.02 3.71 86.31 0.32 2.34 16 7 C -0.11 -3.27 5.08 30.54 0.16 -3.11 16 8 C 0.15 3.53 3.05 44.93 0.14 3.67 16 9 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 10 C -0.09 -1.58 2.71 -10.66 -0.03 -1.61 16 11 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 12 C -0.11 -1.31 5.55 31.06 0.17 -1.14 16 13 C -0.13 -2.01 5.73 31.05 0.18 -1.83 16 14 C 0.10 1.94 6.37 86.35 0.55 2.49 16 15 N -0.60 -16.20 2.36 -795.69 -1.88 -18.08 16 16 C 0.53 19.67 6.13 87.66 0.54 20.21 16 17 O -0.53 -23.26 9.64 -3.02 -0.03 -23.29 16 18 C -0.13 -5.17 4.53 71.24 0.32 -4.85 16 19 S -0.14 -7.85 20.57 -56.49 -1.16 -9.01 16 20 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 21 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 22 C 0.02 0.95 5.49 84.86 0.47 1.42 16 23 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 24 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 28 C 0.06 1.39 4.21 86.34 0.36 1.75 16 29 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 1.30 6.20 -2.39 -0.01 1.28 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.01 0.31 8.08 -2.39 -0.02 0.29 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.99 5.79 -2.39 -0.01 1.98 16 39 H 0.03 1.19 4.70 -6.81 -0.03 1.16 16 40 H 0.08 2.77 5.85 -8.34 -0.05 2.73 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 1.01 6.20 -2.38 -0.01 1.00 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.69 5.94 -2.39 -0.01 1.68 16 48 H 0.09 3.57 7.97 -2.39 -0.02 3.55 16 49 H 0.10 3.80 7.66 -2.39 -0.02 3.78 16 50 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 51 H 0.02 0.46 5.77 -2.39 -0.01 0.45 16 52 H 0.08 1.60 8.12 -2.38 -0.02 1.58 16 Total: -1.00 -72.34 391.48 1.07 -71.26 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.83 Total: 25.42 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 5.30 Total: -17.56 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -5.89 Total: -92.74 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.03 Total: -23.29 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Total: -72.34 1.07 -71.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731467812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.230 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds