Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88471 * 305.69781 * 9 8 7 11 11 C 1.55159 * 111.00334 * 181.81896 * 9 8 7 12 12 C 1.54368 * 102.91957 * 206.45251 * 11 9 8 13 13 N 1.47023 * 107.28798 * 22.14137 * 12 11 9 14 14 C 1.34776 * 125.64936 * 181.12684 * 13 12 11 15 15 O 1.21276 * 120.00200 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99820 * 359.95780 * 14 13 12 17 17 S 1.80998 * 109.47314 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00397 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99325 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00092 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00416 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99797 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47350 * 59.99766 * 22 20 18 24 24 H 1.48501 * 109.47076 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46964 * 299.99483 * 22 20 18 26 26 C 1.47421 * 108.70345 * 1.09044 * 13 12 11 27 27 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 28 28 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 29 29 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 30 30 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 31 31 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 32 32 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 33 33 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 34 34 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 35 35 H 1.09001 * 113.68366 * 203.67598 * 4 2 1 36 36 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 37 37 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 38 38 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 39 39 H 1.00904 * 111.00423 * 303.95194 * 7 6 5 40 40 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 41 41 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 42 42 H 1.09001 * 110.72082 * 324.78937 * 11 9 8 43 43 H 1.09002 * 110.71588 * 88.06250 * 11 9 8 44 44 H 1.09001 * 109.84351 * 262.73547 * 12 11 9 45 45 H 1.09000 * 110.02609 * 141.65363 * 12 11 9 46 46 H 1.09002 * 109.47143 * 300.00237 * 16 14 13 47 47 H 1.09000 * 109.47072 * 59.99909 * 16 14 13 48 48 H 0.96997 * 120.00715 * 180.02562 * 21 20 18 49 49 H 1.09004 * 110.37013 * 217.03290 * 26 13 12 50 50 H 1.09002 * 110.46176 * 94.75826 * 26 13 12 51 51 H 1.08999 * 113.61825 * 89.16304 * 27 5 4 52 52 H 1.09009 * 113.61337 * 220.05752 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1444 -4.0242 -0.9801 8 6 4.3117 -4.9158 -1.0066 9 6 4.0859 -6.0210 -2.0403 10 1 3.1485 -6.5442 -1.8512 11 6 5.2802 -7.0112 -2.0655 12 6 5.2359 -7.5687 -3.5043 13 7 4.5076 -6.5932 -4.3287 14 6 4.2359 -6.7224 -5.6424 15 8 3.6249 -5.8509 -6.2238 16 6 4.6917 -7.9495 -6.3890 17 16 4.1784 -7.8278 -8.1204 18 6 4.8215 -9.3476 -8.7379 19 1 5.3486 -10.0192 -8.0764 20 6 4.6517 -9.6809 -10.0744 21 7 4.0098 -8.8621 -10.8807 22 14 5.3331 -11.2925 -10.7289 23 1 4.7146 -12.4258 -9.9951 24 1 5.0205 -11.4109 -12.1758 25 1 6.8052 -11.3223 -10.5360 26 6 4.1230 -5.4507 -3.4801 27 6 2.1448 -0.9318 -1.0601 28 1 -0.3633 0.3313 0.9729 29 1 -0.3633 0.6769 -0.7732 30 1 -0.3634 -1.0081 -0.1995 31 1 3.1943 1.3532 -0.1995 32 1 1.6416 2.0076 -0.7733 33 1 1.9600 1.8733 0.9728 34 1 1.4945 -1.1068 1.9156 35 1 3.1590 -0.6496 1.3507 36 1 1.1573 -2.6019 0.0035 37 1 4.2073 -2.3618 -0.2587 38 1 3.4590 -3.3802 0.9947 39 1 2.2982 -4.5424 -0.7966 40 1 5.1998 -4.3436 -1.2751 41 1 4.4507 -5.3617 -0.0218 42 1 6.2189 -6.4879 -1.8837 43 1 5.1349 -7.8092 -1.3374 44 1 4.7140 -8.5256 -3.5145 45 1 6.2486 -7.6949 -3.8871 46 1 5.7779 -8.0245 -6.3361 47 1 4.2440 -8.8357 -5.9391 48 1 3.8908 -9.0952 -11.8146 49 1 3.1390 -5.0796 -3.7666 50 1 4.8641 -4.6548 -3.5538 51 1 3.1575 -0.6534 -1.3517 52 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731650642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -53.827939 kcal Electronic energy + Delta-G solvation = -26581.493272 eV Core-core repulsion = 22898.949730 eV Total energy + Delta-G solvation = -3682.543542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06778 -40.66982 -38.82346 -36.65394 -34.59538 -33.53110 -31.78561 -30.82209 -29.83178 -28.28710 -27.72824 -26.94367 -26.56234 -24.99834 -23.42877 -21.90557 -21.02826 -20.69236 -19.55094 -19.09343 -18.04106 -17.48991 -16.89096 -16.84135 -16.41300 -16.29752 -16.05357 -15.65092 -15.42146 -15.22189 -14.92776 -14.57481 -14.40108 -14.30551 -14.10172 -13.90031 -13.75102 -13.58441 -13.39491 -13.17287 -13.12187 -12.86614 -12.73172 -12.67971 -12.63524 -12.60928 -12.22528 -12.11904 -12.01436 -11.74114 -11.61838 -11.51886 -11.34766 -11.13366 -10.97775 -10.88692 -10.74873 -10.29874 -9.67878 -9.24336 -8.69567 -8.34773 -6.14370 1.23747 1.44150 1.44875 1.55302 1.55905 2.12048 2.27137 2.99015 3.08018 3.26592 3.56937 3.63345 3.66289 3.77967 3.78292 3.87100 3.93220 4.10153 4.20104 4.31768 4.33817 4.40463 4.43089 4.45498 4.48923 4.59440 4.69089 4.70213 4.77532 4.78516 4.81497 4.85589 4.88645 4.94211 4.95334 5.00643 5.02687 5.05915 5.06493 5.12281 5.20345 5.30230 5.32102 5.35087 5.40361 5.44206 5.60793 5.69926 6.14665 6.18907 6.41412 6.51739 7.05643 7.11832 8.74397 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.001699 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.168521 B =16474.851235 C =17549.312585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.103 4.103 6 C 0.076 3.924 7 N -0.703 5.703 8 C 0.079 3.921 9 C -0.085 4.085 10 H 0.087 0.913 11 C -0.111 4.111 12 C 0.088 3.912 13 N -0.620 5.620 14 C 0.542 3.458 15 O -0.570 6.570 16 C -0.118 4.118 17 S -0.153 6.153 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.261 1.261 26 C 0.120 3.880 27 C -0.122 4.122 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.344 0.656 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.272 0.728 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.074 0.926 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 11.188 32.416 34.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.156 4.156 5 C -0.121 4.121 6 C -0.053 4.053 7 N -0.335 5.335 8 C -0.050 4.050 9 C -0.105 4.105 10 H 0.105 0.895 11 C -0.149 4.149 12 C -0.034 4.034 13 N -0.355 5.355 14 C 0.331 3.669 15 O -0.449 6.449 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.002 4.002 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.162 0.838 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.092 0.908 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.252 12.886 30.798 33.386 hybrid contribution 0.635 -2.018 0.289 2.135 sum 0.383 10.868 31.087 32.934 Atomic orbital electron populations 1.21589 0.93122 1.01766 1.02017 1.21876 0.95695 0.94693 0.97209 1.21720 1.00381 0.95315 1.01807 1.23023 1.01349 0.95056 0.96212 1.22441 0.98230 0.94533 0.96937 1.21896 0.97803 0.92595 0.92990 1.60409 1.05393 1.14720 1.52968 1.21824 0.93852 0.92372 0.96979 1.22305 0.99941 0.96225 0.92026 0.89503 1.22683 0.98739 0.99412 0.94091 1.22382 0.96969 0.92370 0.91664 1.48546 1.56621 1.23108 1.07210 1.19813 0.78672 0.87160 0.81298 1.90682 1.42394 1.43900 1.67952 1.23297 1.05124 0.99015 0.99515 1.85608 1.75553 1.29763 1.01632 1.23162 1.42416 1.05606 0.98368 0.89872 1.26160 0.94993 1.02096 0.95890 1.70180 1.40336 1.38346 1.05911 0.84976 0.78972 0.76765 0.77089 1.18567 1.20318 1.18572 1.22214 0.99905 0.88161 0.89883 1.23067 1.00467 0.96091 0.96354 0.91742 0.92742 0.92705 0.92646 0.93018 0.92015 0.91022 0.89664 0.89516 0.91508 0.94364 0.83778 0.90883 0.92703 0.88967 0.87146 0.90527 0.90494 0.87634 0.87602 0.91944 0.92811 0.92015 0.90759 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.07 71.98 0.65 -0.86 16 2 C -0.09 -1.17 1.39 -51.59 -0.07 -1.24 16 3 C -0.13 -1.56 9.20 71.98 0.66 -0.89 16 4 C -0.12 -1.23 6.79 31.12 0.21 -1.02 16 5 C -0.10 -1.26 3.54 -10.27 -0.04 -1.29 16 6 C 0.08 0.90 5.51 86.31 0.48 1.37 16 7 N -0.70 -9.71 6.39 -513.86 -3.28 -13.00 16 8 C 0.08 0.93 5.13 86.30 0.44 1.37 16 9 C -0.09 -1.27 3.21 -9.40 -0.03 -1.30 16 10 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 11 C -0.11 -1.29 6.42 31.80 0.20 -1.09 16 12 C 0.09 1.71 6.49 86.74 0.56 2.27 16 13 N -0.62 -18.45 3.33 -811.71 -2.70 -21.15 16 14 C 0.54 22.42 7.87 87.66 0.69 23.11 16 15 O -0.57 -29.16 16.12 -3.02 -0.05 -29.21 16 16 C -0.12 -5.05 5.35 71.24 0.38 -4.67 16 17 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 18 C -0.55 -31.97 9.50 67.95 0.65 -31.33 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.92 13.22 21.65 0.29 -56.64 16 22 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 C 0.12 3.05 6.27 86.86 0.54 3.60 16 27 C -0.12 -1.86 6.76 31.18 0.21 -1.65 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.68 7.34 -2.39 -0.02 0.66 16 31 H 0.05 0.64 7.96 -2.39 -0.02 0.62 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 35 H 0.08 0.81 8.06 -2.39 -0.02 0.79 16 36 H 0.09 1.10 7.66 -2.39 -0.02 1.08 16 37 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 38 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.34 4.34 8.73 -89.69 -0.78 3.56 16 40 H 0.07 0.93 8.03 -2.39 -0.02 0.91 16 41 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.09 0.87 8.04 -2.39 -0.02 0.85 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 47 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 48 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 49 H 0.05 1.66 8.04 -2.38 -0.02 1.64 16 50 H 0.06 1.59 7.95 -2.39 -0.02 1.57 16 51 H 0.07 1.20 7.75 -2.39 -0.02 1.18 16 52 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 Total: -1.00 -78.13 425.95 1.21 -76.92 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.08 Total: 19.41 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 6.01 Total: -12.37 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -5.70 Total: -90.78 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.21 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -78.13 1.21 -76.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731650642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.092 kcal (2) G-P(sol) polarization free energy of solvation -78.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds