Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00236 * 2 1 4 4 C 1.52999 * 109.47276 * 293.95202 * 3 2 1 5 5 N 1.46497 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 H 1.09000 * 109.60226 * 54.67442 * 9 8 6 11 11 C 1.53342 * 109.60546 * 174.99832 * 9 8 6 12 12 C 1.53067 * 108.42707 * 187.28777 * 11 9 8 13 13 C 1.50177 * 109.88980 * 311.09988 * 12 11 9 14 14 O 1.21284 * 118.24548 * 197.55826 * 13 12 11 15 15 N 1.33357 * 123.50751 * 17.58464 * 13 12 11 16 16 C 1.45746 * 124.10818 * 357.77045 * 15 13 12 17 17 C 1.46905 * 110.99649 * 123.95345 * 2 1 3 18 18 C 1.50708 * 109.47027 * 66.04830 * 17 2 1 19 19 O 1.21292 * 119.99694 * 359.97438 * 18 17 2 20 20 N 1.34773 * 119.99691 * 180.02562 * 18 17 2 21 21 C 1.37103 * 119.99775 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99802 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99788 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00230 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99596 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47066 * 89.99940 * 25 23 21 27 27 H 1.48500 * 109.46802 * 209.99473 * 25 23 21 28 28 H 1.48500 * 109.47358 * 329.99709 * 25 23 21 29 29 H 1.09011 * 109.46931 * 59.99919 * 1 2 3 30 30 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47321 * 300.00534 * 1 2 3 32 32 H 1.09009 * 109.46854 * 173.94958 * 3 2 1 33 33 H 1.08993 * 109.47139 * 53.95413 * 3 2 1 34 34 H 1.08995 * 109.46838 * 59.99864 * 4 3 2 35 35 H 1.09001 * 109.46617 * 300.00199 * 4 3 2 36 36 H 0.97000 * 120.00580 * 0.02562 * 5 4 3 37 37 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 38 38 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 39 39 H 1.09004 * 109.67283 * 307.02506 * 11 9 8 40 40 H 1.08996 * 109.67489 * 67.51792 * 11 9 8 41 41 H 1.08993 * 109.40178 * 71.22862 * 12 11 9 42 42 H 1.08997 * 109.40327 * 190.97235 * 12 11 9 43 43 H 0.97004 * 117.94468 * 177.78011 * 15 13 12 44 44 H 1.09000 * 109.30733 * 258.76537 * 16 15 13 45 45 H 1.09001 * 109.30139 * 139.38573 * 16 15 13 46 46 H 1.09001 * 109.46766 * 186.04498 * 17 2 1 47 47 H 1.08995 * 109.47210 * 306.04671 * 17 2 1 48 48 H 0.96999 * 120.00036 * 359.97438 * 20 18 17 49 49 H 0.96998 * 119.99733 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1561 3.4253 -1.3179 6 6 1.9556 4.2241 -2.3848 7 8 1.3405 3.8107 -3.3449 8 6 2.4898 5.6332 -2.3820 9 6 2.1216 6.3209 -3.6983 10 1 1.0443 6.2613 -3.8531 11 6 2.5538 7.7913 -3.6490 12 6 2.0134 8.4965 -4.8955 13 6 2.3406 7.6913 -6.1202 14 8 2.2814 8.2397 -7.2004 15 7 2.6923 6.4054 -6.0836 16 6 2.8484 5.6354 -4.8561 17 6 1.9953 -0.7660 1.1377 18 6 1.6368 -2.2205 0.9729 19 8 1.0045 -2.5831 0.0033 20 7 2.0178 -3.1180 1.9033 21 6 1.6912 -4.4411 1.7536 22 1 1.1282 -4.7641 0.8904 23 6 2.0835 -5.3664 2.7132 24 7 2.7681 -4.9733 3.7638 25 14 1.6379 -7.1690 2.5096 26 1 2.7144 -7.8632 1.7583 27 1 1.4849 -7.7952 3.8474 28 1 0.3601 -7.2816 1.7613 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0798 1.3443 0.1083 33 1 1.5612 1.9273 0.8309 34 1 0.5473 2.0845 -1.4265 35 1 2.0659 1.5014 -2.1491 36 1 2.6483 3.7559 -0.5503 37 1 2.0540 6.1854 -1.5493 38 1 3.5743 5.6105 -2.2750 39 1 2.1470 8.2636 -2.7548 40 1 3.6419 7.8537 -3.6341 41 1 0.9321 8.6035 -4.8108 42 1 2.4682 9.4835 -4.9790 43 1 2.8546 5.9544 -6.9270 44 1 3.9083 5.5505 -4.6163 45 1 2.4340 4.6378 -5.0014 46 1 3.0796 -0.6611 1.1757 47 1 1.5610 -0.3873 2.0628 48 1 2.5231 -2.8279 2.6788 49 1 3.0423 -5.6194 4.4334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731772746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -112.709601 kcal Electronic energy + Delta-G solvation = -28585.546524 eV Core-core repulsion = 24354.156467 eV Total energy + Delta-G solvation = -4231.390057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89007 -39.88935 -38.71417 -37.26992 -36.69763 -34.75449 -33.87429 -33.80890 -31.93950 -31.28631 -29.75207 -27.84362 -27.12261 -25.34743 -24.87360 -23.81536 -22.44316 -21.32770 -20.61181 -19.54277 -19.21078 -17.89046 -17.56132 -17.47978 -16.50569 -16.47572 -16.10615 -15.91400 -15.78873 -15.32992 -14.98361 -14.69776 -14.53875 -14.44398 -14.07669 -13.93534 -13.75205 -13.49988 -13.47428 -13.27711 -13.16115 -12.56974 -12.17906 -12.06134 -11.94389 -11.75563 -11.56992 -11.50641 -11.43290 -11.39994 -11.32621 -11.10835 -10.97239 -10.41535 -10.25030 -10.19758 -10.05459 -9.50891 -9.43037 -9.28031 -8.52800 -8.02973 -7.93664 -6.44882 -3.85670 2.30037 2.31287 2.75345 2.94170 3.15854 3.24853 3.30576 3.86185 3.94311 4.01649 4.10220 4.14864 4.25017 4.28438 4.48824 4.73882 4.76925 4.85694 4.89147 4.95296 5.01453 5.06807 5.08581 5.21074 5.22239 5.28537 5.31814 5.31942 5.55282 5.57608 5.63196 5.73395 5.76913 5.82846 5.86959 5.94470 6.13580 6.23343 6.40751 6.50679 6.98326 7.11030 7.18559 7.26793 7.52520 7.86371 7.90292 8.03166 8.58381 9.15162 9.50828 10.02578 10.72807 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037500 B = 0.001414 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.480312 B =19796.532329 C =20095.191452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.729 5.729 6 C 0.509 3.491 7 O -0.536 6.536 8 C -0.134 4.134 9 C -0.089 4.089 10 H 0.091 0.909 11 C -0.120 4.120 12 C -0.134 4.134 13 C 0.517 3.483 14 O -0.564 6.564 15 N -0.716 5.716 16 C 0.107 3.893 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.400 0.600 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.400 0.600 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 26.407 -6.009 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.295 3.705 7 O -0.413 6.413 8 C -0.174 4.174 9 C -0.108 4.108 10 H 0.110 0.890 11 C -0.158 4.158 12 C -0.174 4.174 13 C 0.304 3.696 14 O -0.444 6.444 15 N -0.367 5.367 16 C -0.017 4.017 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.235 0.765 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.117 25.883 -7.956 27.161 hybrid contribution 0.280 -0.514 1.542 1.649 sum 2.397 25.369 -6.414 26.277 Atomic orbital electron populations 1.22629 0.86454 1.04806 0.99084 1.61446 1.08967 1.10401 1.43127 1.22254 1.00736 0.89843 0.95643 1.21355 0.99644 0.80632 0.98680 1.45981 1.57903 1.14508 1.19670 1.20632 0.79905 0.87481 0.82459 1.90719 1.40732 1.75863 1.33967 1.21695 1.03269 0.93067 0.99418 1.21218 1.02174 0.94226 0.93208 0.89044 1.21760 1.01751 0.94349 0.97951 1.21622 1.03942 0.99746 0.92104 1.20216 0.75978 0.82114 0.91294 1.90767 1.53512 1.69256 1.30816 1.45469 1.69723 1.11046 1.10487 1.21652 0.99982 0.96393 0.83670 1.21869 1.00654 0.94267 0.91611 1.19701 0.85595 0.86593 0.85305 1.90495 1.43853 1.80089 1.31610 1.41859 1.49403 1.07380 1.21387 1.19708 1.32979 0.82273 1.07929 0.87875 1.25254 0.96788 1.00578 0.95256 1.69608 1.38067 1.35767 1.10893 0.85858 0.79127 0.81855 0.77455 1.20383 1.20948 1.19416 0.91870 0.88341 0.96621 0.90294 0.94594 0.91130 0.90195 0.76641 0.87996 0.88282 0.90107 0.90834 0.88093 0.88022 0.76460 0.91958 0.88368 0.89328 0.93349 0.77511 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.06 0.54 0.82 16 2 N -0.52 -7.93 4.50 -244.36 -1.10 -9.03 16 3 C 0.04 0.47 5.07 -3.82 -0.02 0.45 16 4 C 0.12 1.24 5.60 -4.04 -0.02 1.22 16 5 N -0.73 -5.11 5.56 -60.30 -0.33 -5.45 16 6 C 0.51 3.95 7.59 -10.98 -0.08 3.87 16 7 O -0.54 -6.40 14.06 5.55 0.08 -6.32 16 8 C -0.13 -0.49 5.17 -27.88 -0.14 -0.63 16 9 C -0.09 -0.44 1.89 -90.48 -0.17 -0.61 16 10 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 11 C -0.12 -0.42 5.33 -26.52 -0.14 -0.56 16 12 C -0.13 -0.75 6.03 -28.10 -0.17 -0.92 16 13 C 0.52 4.82 7.71 -11.87 -0.09 4.72 16 14 O -0.56 -7.74 17.78 5.55 0.10 -7.64 16 15 N -0.72 -5.54 5.45 -61.39 -0.33 -5.87 16 16 C 0.11 0.67 6.12 -4.49 -0.03 0.65 16 17 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 18 C 0.44 10.09 7.48 -10.98 -0.08 10.01 16 19 O -0.58 -15.14 13.91 5.55 0.08 -15.06 16 20 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 21 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H 0.06 0.87 6.47 -51.92 -0.34 0.54 16 30 H 0.10 1.89 5.82 -51.93 -0.30 1.58 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.74 7.93 -51.92 -0.41 0.32 16 33 H 0.04 0.34 8.12 -51.93 -0.42 -0.09 16 34 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 37 H 0.10 0.18 8.14 -51.92 -0.42 -0.25 16 38 H 0.10 0.18 8.10 -51.93 -0.42 -0.24 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.22 8.13 -51.93 -0.42 -0.20 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.40 2.98 8.80 -40.82 -0.36 2.62 16 44 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 45 H 0.10 0.81 6.23 -51.93 -0.32 0.49 16 46 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 47 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 48 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 49 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -35.88 396.96 -8.29 -44.17 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.72 Total: 8.82 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -0.68 Total: 11.94 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -1.10 Total: -57.59 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: 0.25 Total: -29.03 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.88 -8.29 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731772746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.536 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds