Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00236 * 2 1 4 4 C 1.52999 * 109.47276 * 293.95202 * 3 2 1 5 5 N 1.46497 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 H 1.09000 * 109.60226 * 54.67442 * 9 8 6 11 11 C 1.53342 * 109.60546 * 174.99832 * 9 8 6 12 12 C 1.53067 * 108.42707 * 187.28777 * 11 9 8 13 13 C 1.50177 * 109.88980 * 311.09988 * 12 11 9 14 14 O 1.21284 * 118.24548 * 197.55826 * 13 12 11 15 15 N 1.33357 * 123.50751 * 17.58464 * 13 12 11 16 16 C 1.45746 * 124.10818 * 357.77045 * 15 13 12 17 17 C 1.46905 * 110.99649 * 123.95345 * 2 1 3 18 18 C 1.50708 * 109.47027 * 66.04830 * 17 2 1 19 19 O 1.21292 * 119.99694 * 359.97438 * 18 17 2 20 20 N 1.34773 * 119.99691 * 180.02562 * 18 17 2 21 21 C 1.37103 * 119.99775 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99802 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99788 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00230 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99596 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47066 * 89.99940 * 25 23 21 27 27 H 1.48500 * 109.46802 * 209.99473 * 25 23 21 28 28 H 1.48500 * 109.47358 * 329.99709 * 25 23 21 29 29 H 1.09011 * 109.46931 * 59.99919 * 1 2 3 30 30 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47321 * 300.00534 * 1 2 3 32 32 H 1.09009 * 109.46854 * 173.94958 * 3 2 1 33 33 H 1.08993 * 109.47139 * 53.95413 * 3 2 1 34 34 H 1.08995 * 109.46838 * 59.99864 * 4 3 2 35 35 H 1.09001 * 109.46617 * 300.00199 * 4 3 2 36 36 H 0.97000 * 120.00580 * 0.02562 * 5 4 3 37 37 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 38 38 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 39 39 H 1.09004 * 109.67283 * 307.02506 * 11 9 8 40 40 H 1.08996 * 109.67489 * 67.51792 * 11 9 8 41 41 H 1.08993 * 109.40178 * 71.22862 * 12 11 9 42 42 H 1.08997 * 109.40327 * 190.97235 * 12 11 9 43 43 H 0.97004 * 117.94468 * 177.78011 * 15 13 12 44 44 H 1.09000 * 109.30733 * 258.76537 * 16 15 13 45 45 H 1.09001 * 109.30139 * 139.38573 * 16 15 13 46 46 H 1.09001 * 109.46766 * 186.04498 * 17 2 1 47 47 H 1.08995 * 109.47210 * 306.04671 * 17 2 1 48 48 H 0.96999 * 120.00036 * 359.97438 * 20 18 17 49 49 H 0.96998 * 119.99733 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1561 3.4253 -1.3179 6 6 1.9556 4.2241 -2.3848 7 8 1.3405 3.8107 -3.3449 8 6 2.4898 5.6332 -2.3820 9 6 2.1216 6.3209 -3.6983 10 1 1.0443 6.2613 -3.8531 11 6 2.5538 7.7913 -3.6490 12 6 2.0134 8.4965 -4.8955 13 6 2.3406 7.6913 -6.1202 14 8 2.2814 8.2397 -7.2004 15 7 2.6923 6.4054 -6.0836 16 6 2.8484 5.6354 -4.8561 17 6 1.9953 -0.7660 1.1377 18 6 1.6368 -2.2205 0.9729 19 8 1.0045 -2.5831 0.0033 20 7 2.0178 -3.1180 1.9033 21 6 1.6912 -4.4411 1.7536 22 1 1.1282 -4.7641 0.8904 23 6 2.0835 -5.3664 2.7132 24 7 2.7681 -4.9733 3.7638 25 14 1.6379 -7.1690 2.5096 26 1 2.7144 -7.8632 1.7583 27 1 1.4849 -7.7952 3.8474 28 1 0.3601 -7.2816 1.7613 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0798 1.3443 0.1083 33 1 1.5612 1.9273 0.8309 34 1 0.5473 2.0845 -1.4265 35 1 2.0659 1.5014 -2.1491 36 1 2.6483 3.7559 -0.5503 37 1 2.0540 6.1854 -1.5493 38 1 3.5743 5.6105 -2.2750 39 1 2.1470 8.2636 -2.7548 40 1 3.6419 7.8537 -3.6341 41 1 0.9321 8.6035 -4.8108 42 1 2.4682 9.4835 -4.9790 43 1 2.8546 5.9544 -6.9270 44 1 3.9083 5.5505 -4.6163 45 1 2.4340 4.6378 -5.0014 46 1 3.0796 -0.6611 1.1757 47 1 1.5610 -0.3873 2.0628 48 1 2.5231 -2.8279 2.6788 49 1 3.0423 -5.6194 4.4334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731772746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = -143.777030 kcal Electronic energy + Delta-G solvation = -28586.893709 eV Core-core repulsion = 24354.156467 eV Total energy + Delta-G solvation = -4232.737242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48376 -40.62751 -40.28923 -38.27834 -37.61791 -35.98030 -35.41517 -34.37760 -33.26357 -32.41361 -30.70018 -29.14381 -27.78307 -26.88063 -25.53559 -24.94946 -23.03717 -22.26908 -21.30640 -20.92499 -19.99508 -19.84026 -18.23301 -18.14558 -17.64432 -17.25693 -17.11991 -16.77733 -16.55327 -16.49503 -16.21912 -15.98082 -15.67894 -15.31444 -15.12963 -15.01792 -14.80779 -14.41485 -14.34529 -14.11047 -13.88187 -13.75846 -13.44100 -13.11583 -13.02451 -12.87751 -12.55242 -12.53762 -12.47636 -12.39666 -12.19692 -12.12918 -12.04422 -11.91237 -11.73987 -11.44662 -10.88392 -10.70581 -10.27228 -10.11349 -9.98154 -9.96740 -9.21766 -8.45219 -5.93268 1.38623 1.42688 1.54702 1.60525 1.74700 2.08309 2.09471 2.31965 2.35919 2.94690 3.22151 3.44430 3.58532 3.70542 3.77061 3.85530 3.89718 4.09140 4.12611 4.27660 4.38221 4.41999 4.48779 4.50298 4.54802 4.57653 4.65441 4.66200 4.71310 4.80174 4.82731 4.93030 4.95151 5.01954 5.03147 5.19139 5.23193 5.39341 5.42892 5.49213 5.76444 5.87148 6.06410 6.20176 6.35510 6.63207 6.66020 7.15586 7.17657 7.37803 7.59421 8.16013 8.72047 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.037500 B = 0.001414 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.480312 B =19796.532329 C =20095.191452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.052 3.948 4 C 0.130 3.870 5 N -0.716 5.716 6 C 0.503 3.497 7 O -0.586 6.586 8 C -0.121 4.121 9 C -0.088 4.088 10 H 0.070 0.930 11 C -0.109 4.109 12 C -0.132 4.132 13 C 0.508 3.492 14 O -0.619 6.619 15 N -0.714 5.714 16 C 0.105 3.895 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.419 0.581 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.397 0.603 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.073 0.927 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 28.440 -3.585 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.369 5.369 6 C 0.291 3.709 7 O -0.466 6.466 8 C -0.161 4.161 9 C -0.108 4.108 10 H 0.088 0.912 11 C -0.146 4.146 12 C -0.172 4.172 13 C 0.297 3.703 14 O -0.503 6.503 15 N -0.363 5.363 16 C -0.018 4.018 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.257 0.743 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.231 0.769 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.134 0.866 47 H 0.091 0.909 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.578 27.935 -5.459 28.687 hybrid contribution -0.182 -1.139 0.714 1.357 sum 3.396 26.796 -4.745 27.424 Atomic orbital electron populations 1.22450 0.87015 1.02278 1.00548 1.61333 1.08800 1.13443 1.42994 1.22271 1.01830 0.87193 0.96289 1.21024 0.98523 0.82237 0.97739 1.45812 1.57632 1.13015 1.20433 1.21473 0.78937 0.88940 0.81525 1.90718 1.42982 1.77057 1.35827 1.21728 1.05038 0.89864 0.99447 1.21201 1.00755 0.95505 0.93291 0.91162 1.21742 1.02548 0.92639 0.97695 1.21682 1.04526 0.99691 0.91275 1.20993 0.74996 0.82420 0.91904 1.90733 1.56070 1.70413 1.33047 1.45594 1.68605 1.10912 1.11150 1.21754 1.01212 0.95200 0.83631 1.21733 1.02362 0.89793 0.93097 1.20879 0.83691 0.88999 0.83829 1.90478 1.45188 1.81529 1.33117 1.41919 1.50110 1.06961 1.22184 1.19638 1.34396 0.84219 1.07993 0.90513 1.25966 0.96312 1.04080 0.94693 1.69659 1.38144 1.37066 1.11153 0.84973 0.78569 0.77228 0.77840 1.19763 1.19523 1.19977 0.90911 0.92751 0.94640 0.88277 0.92056 0.92844 0.92965 0.74346 0.84767 0.85275 0.87216 0.89538 0.87513 0.87115 0.76897 0.89996 0.90720 0.86649 0.90938 0.76929 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 8.96 127.69 1.14 1.91 16 2 N -0.54 -15.86 4.50 -927.03 -4.17 -20.03 16 3 C 0.05 0.94 5.07 86.30 0.44 1.37 16 4 C 0.13 2.48 5.60 86.38 0.48 2.96 16 5 N -0.72 -8.00 5.56 -463.07 -2.57 -10.57 16 6 C 0.50 6.73 7.59 87.66 0.67 7.40 16 7 O -0.59 -13.99 14.06 -3.04 -0.04 -14.03 16 8 C -0.12 -0.39 5.17 29.85 0.15 -0.23 16 9 C -0.09 -0.66 1.89 -10.70 -0.02 -0.68 16 10 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 11 C -0.11 -0.35 5.33 30.73 0.16 -0.19 16 12 C -0.13 -1.25 6.03 29.71 0.18 -1.07 16 13 C 0.51 9.51 7.71 87.71 0.68 10.19 16 14 O -0.62 -17.76 17.78 -3.04 -0.05 -17.81 16 15 N -0.71 -11.20 5.45 -467.32 -2.55 -13.74 16 16 C 0.11 1.23 6.12 86.50 0.53 1.76 16 17 C 0.06 1.92 5.45 85.56 0.47 2.38 16 18 C 0.44 20.18 7.48 87.66 0.66 20.84 16 19 O -0.62 -33.59 13.91 -3.07 -0.04 -33.63 16 20 N -0.57 -28.62 5.29 -306.98 -1.62 -30.25 16 21 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 22 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 24 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 25 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 H 0.07 2.02 6.47 -2.38 -0.02 2.01 16 30 H 0.05 2.15 5.82 -2.39 -0.01 2.14 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.43 7.93 -2.38 -0.02 1.41 16 33 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 34 H 0.05 1.21 6.55 -2.39 -0.02 1.19 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.42 1.44 8.47 -92.71 -0.79 0.65 16 37 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 16 38 H 0.13 -0.26 8.10 -2.39 -0.02 -0.28 16 39 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.09 0.13 8.13 -2.39 -0.02 0.11 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.40 6.38 8.80 -92.71 -0.82 5.56 16 44 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 45 H 0.07 1.27 6.23 -2.39 -0.01 1.26 16 46 H 0.12 3.03 7.93 -2.39 -0.02 3.01 16 47 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 48 H 0.40 18.57 7.90 -92.71 -0.73 17.83 16 49 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -83.94 396.96 -3.26 -87.20 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -1.33 Total: 27.88 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 6.82 Total: 28.71 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -10.63 Total: -122.85 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -0.14 Total: -65.47 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -83.94 -3.26 -87.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731772746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.574 kcal (2) G-P(sol) polarization free energy of solvation -83.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds