Wall clock time and date at job start Sat Apr 11 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46964 * 269.99715 * 3 2 1 5 5 H 1.48502 * 109.47162 * 29.99932 * 3 2 1 6 6 H 1.48502 * 109.47082 * 149.99716 * 3 2 1 7 7 C 1.38805 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99890 * 359.97438 * 7 2 1 9 9 S 1.76193 * 119.99712 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99903 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47285 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00052 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00349 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47515 * 184.95465 * 14 13 11 16 16 H 1.09006 * 109.87729 * 54.84938 * 15 14 13 17 17 C 1.54322 * 109.88599 * 293.82356 * 15 14 13 18 18 C 1.55553 * 102.82719 * 218.17703 * 17 15 14 19 19 C 1.54899 * 101.66849 * 35.68610 * 18 17 15 20 20 N 1.47433 * 109.89310 * 175.88509 * 15 14 13 21 21 C 1.46902 * 111.00156 * 356.31151 * 20 15 14 22 22 C 1.53002 * 109.47465 * 176.04155 * 21 20 15 23 23 C 1.52997 * 109.46829 * 179.97438 * 22 21 20 24 24 C 1.54263 * 110.03317 * 292.90446 * 23 22 21 25 25 C 1.54972 * 104.15910 * 217.14053 * 24 23 22 26 26 C 1.54883 * 102.77915 * 37.88740 * 25 24 23 27 27 C 1.53877 * 110.02857 * 175.68902 * 23 22 21 28 28 H 0.97005 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47188 * 59.99789 * 10 9 7 30 30 H 1.09008 * 109.46859 * 299.99455 * 10 9 7 31 31 H 0.97005 * 119.99849 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.47519 * 64.95366 * 14 13 11 33 33 H 1.09001 * 109.47279 * 304.94794 * 14 13 11 34 34 H 1.08998 * 110.70690 * 336.52768 * 17 15 14 35 35 H 1.09005 * 110.70250 * 99.76443 * 17 15 14 36 36 H 1.08996 * 111.01282 * 277.57216 * 18 17 15 37 37 H 1.08994 * 110.98059 * 153.78221 * 18 17 15 38 38 H 1.08995 * 110.37630 * 204.06082 * 19 18 17 39 39 H 1.09001 * 110.46920 * 81.77094 * 19 18 17 40 40 H 1.09006 * 109.46805 * 296.04302 * 21 20 15 41 41 H 1.08998 * 109.47250 * 56.03461 * 21 20 15 42 42 H 1.09003 * 109.46585 * 299.99523 * 22 21 20 43 43 H 1.08994 * 109.47232 * 59.99874 * 22 21 20 44 44 H 1.09001 * 110.01751 * 54.29988 * 23 22 21 45 45 H 1.08998 * 110.48729 * 335.78855 * 24 23 22 46 46 H 1.09001 * 110.48532 * 98.43573 * 24 23 22 47 47 H 1.09002 * 110.71553 * 279.57421 * 25 24 23 48 48 H 1.08998 * 110.76102 * 156.22829 * 25 24 23 49 49 H 1.08995 * 110.48737 * 203.40561 * 26 25 24 50 50 H 1.09001 * 110.48537 * 80.76289 * 26 25 24 51 51 H 1.09001 * 110.03474 * 238.56831 * 27 23 22 52 52 H 1.09001 * 110.03309 * 359.95131 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0017 11 6 5.5729 -3.2326 -0.0008 12 8 6.3439 -2.2965 0.0005 13 7 6.0456 -4.4948 -0.0024 14 6 7.4905 -4.7359 -0.0021 15 6 7.7572 -6.2372 -0.1288 16 1 7.2530 -6.6300 -1.0118 17 6 7.2520 -6.9684 1.1329 18 6 8.3400 -8.0567 1.3602 19 6 9.6252 -7.3111 0.9224 20 7 9.2076 -6.4824 -0.2286 21 6 9.9541 -5.2177 -0.2651 22 6 11.4556 -5.5117 -0.2690 23 6 12.2329 -4.1944 -0.3077 24 6 12.0056 -3.4861 -1.6591 25 6 13.3790 -2.8484 -1.9886 26 6 14.3819 -3.9208 -1.4956 27 6 13.7431 -4.4705 -0.2034 28 1 -0.4850 0.8401 0.0004 29 1 3.6439 -3.4306 -0.8923 30 1 3.6432 -3.4326 0.8877 31 1 5.4289 -5.2436 -0.0038 32 1 7.9201 -4.3680 0.9297 33 1 7.9462 -4.2138 -0.8434 34 1 7.2052 -6.2856 1.9812 35 1 6.2793 -7.4250 0.9501 36 1 8.1596 -8.9273 0.7296 37 1 8.3928 -8.3422 2.4107 38 1 10.3923 -8.0234 0.6187 39 1 9.9936 -6.6796 1.7309 40 1 9.6895 -4.6656 -1.1670 41 1 9.7027 -4.6220 0.6124 42 1 11.7201 -6.0637 0.6329 43 1 11.7069 -6.1073 -1.1465 44 1 11.9140 -3.5488 0.5106 45 1 11.7267 -4.2085 -2.4263 46 1 11.2400 -2.7163 -1.5623 47 1 13.5118 -1.9149 -1.4417 48 1 13.4825 -2.6868 -3.0616 49 1 15.3495 -3.4678 -1.2801 50 1 14.4872 -4.7136 -2.2362 51 1 14.1573 -3.9581 0.6649 52 1 13.9222 -5.5428 -0.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731822138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:47 Heat of formation + Delta-G solvation = -78.086794 kcal Electronic energy + Delta-G solvation = -27367.608713 eV Core-core repulsion = 23684.013228 eV Total energy + Delta-G solvation = -3683.595485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25104 -40.19333 -39.10943 -35.81496 -34.67923 -34.39585 -32.15406 -31.22001 -29.93984 -29.58018 -27.87100 -27.14697 -25.89390 -23.99373 -22.12911 -21.71394 -21.54188 -20.61347 -20.41796 -19.79887 -17.97237 -17.71123 -17.13355 -17.04672 -16.60223 -16.56370 -16.32547 -15.84814 -15.81896 -15.59930 -15.03207 -14.95547 -14.71178 -14.28828 -14.16250 -14.04152 -13.78685 -13.72025 -13.35750 -13.29240 -13.02030 -12.73628 -12.67469 -12.48292 -12.26774 -12.08680 -11.95826 -11.91291 -11.87223 -11.85714 -11.63523 -11.52857 -11.44959 -11.35640 -11.19480 -11.18072 -11.08131 -10.54938 -10.23117 -9.29595 -9.00988 -8.52379 -6.23263 0.97104 1.30470 1.45468 1.52307 1.54098 2.15161 2.24421 2.69282 2.85749 2.96811 3.48143 3.63257 3.73205 3.74525 3.76618 3.86595 3.89115 4.11522 4.18047 4.21962 4.22890 4.32947 4.40640 4.45145 4.49126 4.56335 4.59883 4.61354 4.70420 4.70998 4.76157 4.81226 4.91562 4.93485 4.96226 5.00406 5.06444 5.09266 5.15379 5.18285 5.21460 5.25935 5.28740 5.37687 5.39361 5.48862 5.56560 5.70026 5.97512 6.03978 6.10771 6.41135 6.92782 7.14472 8.59883 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.002300 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.800065 B =12170.553779 C =14231.846455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.708 5.708 14 C 0.112 3.888 15 C 0.068 3.932 16 H 0.099 0.901 17 C -0.141 4.141 18 C -0.124 4.124 19 C 0.038 3.962 20 N -0.522 5.522 21 C 0.043 3.957 22 C -0.098 4.098 23 C -0.092 4.092 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.118 4.118 28 H 0.277 0.723 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.417 0.583 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.063 0.937 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.262 -18.909 0.550 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.362 5.362 14 C -0.013 4.013 15 C -0.041 4.041 16 H 0.117 0.883 17 C -0.179 4.179 18 C -0.161 4.161 19 C -0.089 4.089 20 N -0.246 5.246 21 C -0.085 4.085 22 C -0.136 4.136 23 C -0.111 4.111 24 C -0.161 4.161 25 C -0.166 4.166 26 C -0.160 4.160 27 C -0.155 4.155 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 28.499 -17.561 0.092 33.475 hybrid contribution -1.776 0.147 0.674 1.905 sum 26.724 -17.414 0.767 31.906 Atomic orbital electron populations 1.70015 1.07243 1.29008 1.49108 1.25565 0.95295 1.02243 0.92947 0.85871 0.80657 0.79664 0.80201 1.18722 1.18310 1.16150 1.22451 0.90160 0.96718 1.58231 0.91839 1.84734 1.06534 1.06202 1.97591 1.23262 0.95632 0.99645 1.07590 1.19992 0.89507 0.83266 0.75201 1.90690 1.59383 1.43864 1.50232 1.45639 1.08347 1.06921 1.75327 1.21995 0.80431 0.97536 1.01289 1.22650 0.89911 0.91443 1.00060 0.88305 1.23007 1.00558 0.97953 0.96372 1.22758 0.93189 0.97824 1.02376 1.23164 0.98515 0.96159 0.91098 1.63909 1.02167 1.16166 1.42340 1.22408 0.94668 0.90885 1.00503 1.21660 0.92431 0.96818 1.02679 1.21751 0.95666 0.96235 0.97444 1.22481 0.97332 0.99240 0.97019 1.22536 0.94734 0.98356 1.00979 1.22351 0.98329 0.98162 0.97163 1.22191 0.93814 1.01450 0.98083 0.91363 0.86702 0.86680 0.74581 0.92820 0.92043 0.91839 0.88859 0.89848 0.89697 0.89181 0.93683 0.91292 0.95253 0.91292 0.91050 0.92189 0.91396 0.93055 0.91946 0.91370 0.91210 0.91323 0.91837 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.75 13.97 21.65 0.30 -55.45 16 2 C 0.04 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.91 45.17 27.74 68.60 1.90 47.08 16 4 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 7 C -0.53 -30.72 10.04 67.96 0.68 -30.04 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 10 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 11 C 0.53 18.40 7.85 87.66 0.69 19.09 16 12 O -0.56 -24.33 15.86 -3.03 -0.05 -24.38 16 13 N -0.71 -16.71 5.40 -463.07 -2.50 -19.21 16 14 C 0.11 2.46 3.71 86.38 0.32 2.78 16 15 C 0.07 1.08 3.51 45.26 0.16 1.24 16 16 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 17 C -0.14 -1.77 6.07 31.92 0.19 -1.58 16 18 C -0.12 -1.30 7.09 32.12 0.23 -1.07 16 19 C 0.04 0.48 5.34 86.77 0.46 0.94 16 20 N -0.52 -8.30 5.27 -860.54 -4.54 -12.84 16 21 C 0.04 0.75 3.58 86.30 0.31 1.06 16 22 C -0.10 -1.38 4.14 30.59 0.13 -1.26 16 23 C -0.09 -1.37 2.93 -10.07 -0.03 -1.40 16 24 C -0.12 -2.02 5.50 31.70 0.17 -1.84 16 25 C -0.13 -1.85 6.91 31.91 0.22 -1.63 16 26 C -0.12 -1.48 6.83 31.67 0.22 -1.26 16 27 C -0.12 -1.45 6.46 31.32 0.20 -1.25 16 28 H 0.28 15.59 8.31 -92.70 -0.77 14.81 16 29 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 30 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.42 7.03 8.22 -92.70 -0.76 6.26 16 32 H 0.05 1.32 6.82 -2.39 -0.02 1.30 16 33 H 0.06 1.57 6.43 -2.39 -0.02 1.55 16 34 H 0.06 0.95 7.79 -2.39 -0.02 0.93 16 35 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.04 0.60 7.38 -2.39 -0.02 0.58 16 40 H 0.07 1.38 6.22 -2.38 -0.01 1.36 16 41 H 0.03 0.58 6.37 -2.39 -0.02 0.57 16 42 H 0.07 0.87 6.80 -2.39 -0.02 0.86 16 43 H 0.07 1.03 8.02 -2.39 -0.02 1.01 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.11 7.77 -2.39 -0.02 1.09 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 51 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 Total: -1.00 -71.37 409.16 -0.98 -72.35 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.09 Total: 19.27 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.86 Total: -16.80 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -6.73 Total: -87.49 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -71.37 -0.98 -72.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731822138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.735 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds