Wall clock time and date at job start Sat Apr 11 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48490 * 109.47136 * 239.99765 * 3 2 1 5 5 H 1.48499 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46924 * 119.99538 * 3 2 1 7 7 C 1.38803 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99741 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99654 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46770 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00063 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99615 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99693 * 184.89433 * 13 11 10 15 15 C 1.53000 * 110.05256 * 293.98005 * 14 13 11 16 16 N 1.46900 * 109.47480 * 304.27101 * 15 14 13 17 17 C 1.46902 * 111.00067 * 175.34644 * 16 15 14 18 18 C 1.52992 * 109.46910 * 180.02562 * 17 16 15 19 19 C 1.54268 * 110.03536 * 292.91038 * 18 17 16 20 20 C 1.54966 * 104.15887 * 217.14148 * 19 18 17 21 21 C 1.54880 * 102.77974 * 37.88642 * 20 19 18 22 22 C 1.53879 * 110.02963 * 175.69577 * 18 17 16 23 23 C 1.53873 * 110.03425 * 55.40066 * 14 13 11 24 24 C 1.54259 * 106.60014 * 119.28282 * 23 14 13 25 25 C 1.54890 * 104.19869 * 336.39213 * 24 23 14 26 26 C 1.54270 * 110.02888 * 172.56601 * 14 13 11 27 27 H 0.96995 * 120.00062 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47196 * 60.00279 * 10 9 7 29 29 H 1.08998 * 109.47367 * 300.00461 * 10 9 7 30 30 H 0.97007 * 120.00270 * 4.89139 * 13 11 10 31 31 H 1.09003 * 109.46788 * 64.27783 * 15 14 13 32 32 H 1.08999 * 109.46851 * 184.27353 * 15 14 13 33 33 H 1.00905 * 110.99697 * 51.40055 * 16 15 14 34 34 H 1.09000 * 109.47178 * 300.00408 * 17 16 15 35 35 H 1.08998 * 109.46450 * 60.00780 * 17 16 15 36 36 H 1.09004 * 110.02159 * 54.30604 * 18 17 16 37 37 H 1.09005 * 110.48345 * 335.78295 * 19 18 17 38 38 H 1.09001 * 110.48584 * 98.43103 * 19 18 17 39 39 H 1.09004 * 110.71660 * 279.56924 * 20 19 18 40 40 H 1.09004 * 110.92077 * 156.29657 * 20 19 18 41 41 H 1.09005 * 110.48754 * 203.40443 * 21 20 19 42 42 H 1.09006 * 110.60111 * 80.82033 * 21 20 19 43 43 H 1.09007 * 110.02957 * 238.57137 * 22 18 17 44 44 H 1.08996 * 110.03466 * 359.97438 * 22 18 17 45 45 H 1.09000 * 110.03010 * 238.57320 * 23 14 13 46 46 H 1.09002 * 110.03284 * 359.97438 * 23 14 13 47 47 H 1.09004 * 110.48813 * 95.06456 * 24 23 14 48 48 H 1.09002 * 110.48806 * 217.71126 * 24 23 14 49 49 H 1.09007 * 110.75226 * 279.63135 * 25 24 23 50 50 H 1.08990 * 110.75876 * 156.25555 * 25 24 23 51 51 H 1.09003 * 110.48517 * 23.00478 * 26 14 13 52 52 H 1.09003 * 110.48156 * 145.64774 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0029 13 7 2.8442 -6.3431 0.0049 14 6 2.3341 -7.7122 -0.1027 15 6 1.5179 -8.0673 1.1417 16 7 2.3406 -7.8639 2.3415 17 6 1.5556 -8.0893 3.5626 18 6 2.4442 -7.8680 4.7882 19 6 3.5310 -8.9608 4.8572 20 6 3.6766 -9.2554 6.3716 21 6 2.2169 -9.1614 6.8809 22 6 1.6092 -7.9952 6.0745 23 6 1.4622 -7.8524 -1.3628 24 6 2.1351 -8.9220 -2.2476 25 6 3.6168 -8.9109 -1.7965 26 6 3.5065 -8.7016 -0.2658 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7306 0.8928 29 1 3.1246 -3.7321 -0.8871 30 1 3.7987 -6.1854 0.0771 31 1 0.6365 -7.4279 1.1927 32 1 1.2071 -9.1106 1.0868 33 1 2.7562 -6.9444 2.3434 34 1 0.7186 -7.3916 3.5903 35 1 1.1770 -9.1114 3.5676 36 1 2.9079 -6.8827 4.7400 37 1 3.2073 -9.8548 4.3242 38 1 4.4708 -8.5905 4.4477 39 1 4.3026 -8.5036 6.8523 40 1 4.0798 -10.2546 6.5367 41 1 2.1987 -8.9380 7.9476 42 1 1.6792 -10.0874 6.6768 43 1 1.6684 -7.0719 6.6508 44 1 0.5709 -8.2141 5.8255 45 1 0.4575 -8.1733 -1.0878 46 1 1.4182 -6.9016 -1.8941 47 1 1.6893 -9.9005 -2.0689 48 1 2.0549 -8.6517 -3.3005 49 1 4.1559 -8.0854 -2.2613 50 1 4.0965 -9.8631 -2.0226 51 1 4.4271 -8.2704 0.1277 52 1 3.2821 -9.6445 0.2330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732226005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:12 Heat of formation + Delta-G solvation = -68.772600 kcal Electronic energy + Delta-G solvation = -28117.319152 eV Core-core repulsion = 24434.127561 eV Total energy + Delta-G solvation = -3683.191591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29083 -38.60930 -37.55104 -35.20308 -33.27192 -32.43749 -30.70728 -29.22894 -28.82342 -28.77778 -27.47750 -25.47884 -24.42819 -22.76067 -21.08009 -20.79529 -20.70717 -19.85136 -19.00925 -17.82240 -16.43427 -16.26340 -16.12051 -15.90405 -15.11785 -14.90243 -14.81372 -14.71021 -14.48582 -14.15008 -13.97204 -13.57004 -13.45180 -13.27264 -13.17079 -12.63967 -12.33678 -12.08358 -11.96303 -11.60898 -11.40136 -11.27140 -11.18368 -11.15932 -11.14260 -11.08483 -11.04983 -11.04037 -10.92938 -10.77633 -10.76555 -10.65806 -10.58456 -10.45979 -9.82850 -9.28462 -9.07125 -8.85546 -8.31173 -8.24790 -6.50714 -6.22607 -3.93027 3.03783 3.10315 3.22585 3.26889 3.31214 3.73132 4.05885 4.19876 4.44793 4.50688 4.54168 4.57904 4.68226 4.79366 5.05092 5.12540 5.14374 5.20436 5.28860 5.33949 5.40556 5.43689 5.44811 5.50339 5.51366 5.53078 5.57815 5.64390 5.69056 5.72927 5.75112 5.75698 5.78714 5.83993 5.88401 5.90799 5.93999 5.99678 6.02218 6.11013 6.14172 6.15754 6.17398 6.23311 6.32689 6.35059 6.82803 7.00847 7.36740 7.58321 7.78340 8.34015 8.65092 9.22744 10.84725 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008487 B = 0.003085 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.411413 B = 9074.681812 C =11514.887163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.729 5.729 14 C 0.181 3.819 15 C 0.050 3.950 16 N -0.683 5.683 17 C 0.066 3.934 18 C -0.090 4.090 19 C -0.103 4.103 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.109 4.109 27 H 0.269 0.731 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.397 0.603 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.340 0.660 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.071 0.929 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -21.989 5.756 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.306 4.306 11 C 0.317 3.683 12 O -0.387 6.387 13 N -0.384 5.384 14 C 0.094 3.906 15 C -0.080 4.080 16 N -0.314 5.314 17 C -0.064 4.064 18 C -0.109 4.109 19 C -0.140 4.140 20 C -0.167 4.167 21 C -0.161 4.161 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.165 4.165 26 C -0.147 4.147 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.231 0.769 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.089 0.911 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.742 -22.845 5.728 24.498 hybrid contribution 1.806 2.314 0.040 2.936 sum 8.548 -20.531 5.768 22.975 Atomic orbital electron populations 1.70003 1.05948 1.27557 1.46821 1.24985 0.95016 0.99004 0.94530 0.86236 0.79257 0.81281 0.78815 1.19939 1.20809 1.19929 1.22830 0.94858 0.91734 1.59024 0.91039 1.85363 1.04922 0.96264 1.96713 1.23555 1.06521 0.95721 1.04755 1.20279 0.86681 0.86200 0.75140 1.90685 1.15302 1.85525 1.47182 1.46290 1.10020 1.05135 1.76978 1.20930 0.93981 0.81517 0.94168 1.22420 0.95568 1.00947 0.89037 1.60547 1.34109 1.35682 1.01079 1.22078 0.94489 1.00686 0.89124 1.21764 0.95943 0.99597 0.93608 1.22270 0.98364 0.98376 0.95032 1.22563 0.96505 1.01036 0.96611 1.22337 0.96113 0.98466 0.99188 1.22181 0.99375 0.98645 0.95759 1.22450 0.98813 0.99893 0.94887 1.22381 0.95454 0.98914 0.99467 1.22550 0.96736 1.01438 0.95800 1.22498 0.97245 0.99060 0.95870 0.92140 0.89500 0.89366 0.76851 0.92881 0.90900 0.84179 0.95224 0.91302 0.91226 0.91442 0.91777 0.91818 0.91968 0.92059 0.91864 0.91808 0.91765 0.91104 0.90649 0.91756 0.91739 0.91521 0.91645 0.91052 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.35 6.89 -10.98 -0.08 9.28 16 12 O -0.51 -10.86 13.12 5.56 0.07 -10.78 16 13 N -0.73 -9.25 4.14 -46.57 -0.19 -9.45 16 14 C 0.18 2.07 0.68 -130.70 -0.09 1.99 16 15 C 0.05 0.62 4.15 -3.82 -0.02 0.60 16 16 N -0.68 -7.67 6.10 -113.78 -0.69 -8.37 16 17 C 0.07 0.72 4.73 -3.83 -0.02 0.70 16 18 C -0.09 -0.89 3.09 -89.50 -0.28 -1.16 16 19 C -0.10 -0.91 6.18 -25.03 -0.15 -1.07 16 20 C -0.13 -1.03 6.91 -24.70 -0.17 -1.20 16 21 C -0.12 -0.99 6.83 -25.08 -0.17 -1.16 16 22 C -0.12 -1.11 6.46 -25.61 -0.17 -1.28 16 23 C -0.12 -1.52 5.20 -25.62 -0.13 -1.66 16 24 C -0.12 -1.21 6.83 -25.08 -0.17 -1.38 16 25 C -0.13 -1.10 6.91 -24.74 -0.17 -1.27 16 26 C -0.11 -0.98 5.81 -25.07 -0.15 -1.12 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 30 H 0.40 4.11 8.23 -40.82 -0.34 3.77 16 31 H 0.05 0.84 6.60 -51.93 -0.34 0.50 16 32 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.34 4.18 7.80 -39.29 -0.31 3.87 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.72 8.02 -51.93 -0.42 0.31 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.62 7.77 -51.93 -0.40 0.22 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 45 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 46 H 0.07 1.16 6.93 -51.93 -0.36 0.80 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.60 7.70 -51.93 -0.40 0.20 16 52 H 0.08 0.72 7.79 -51.93 -0.40 0.31 16 LS Contribution 414.21 15.07 6.24 6.24 Total: -1.00 -31.76 414.21 -12.06 -43.82 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -9.65 Total: 5.85 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.34 Total: -14.47 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.15 Total: -43.23 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.76 -12.06 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732226005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.954 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds