Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48490 * 109.47136 * 239.99765 * 3 2 1 5 5 H 1.48499 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46924 * 119.99538 * 3 2 1 7 7 C 1.38803 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99741 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99654 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46770 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00063 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99615 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99693 * 184.89433 * 13 11 10 15 15 C 1.53000 * 110.05256 * 293.98005 * 14 13 11 16 16 N 1.46900 * 109.47480 * 304.27101 * 15 14 13 17 17 C 1.46902 * 111.00067 * 175.34644 * 16 15 14 18 18 C 1.52992 * 109.46910 * 180.02562 * 17 16 15 19 19 C 1.54268 * 110.03536 * 292.91038 * 18 17 16 20 20 C 1.54966 * 104.15887 * 217.14148 * 19 18 17 21 21 C 1.54880 * 102.77974 * 37.88642 * 20 19 18 22 22 C 1.53879 * 110.02963 * 175.69577 * 18 17 16 23 23 C 1.53873 * 110.03425 * 55.40066 * 14 13 11 24 24 C 1.54259 * 106.60014 * 119.28282 * 23 14 13 25 25 C 1.54890 * 104.19869 * 336.39213 * 24 23 14 26 26 C 1.54270 * 110.02888 * 172.56601 * 14 13 11 27 27 H 0.96995 * 120.00062 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47196 * 60.00279 * 10 9 7 29 29 H 1.08998 * 109.47367 * 300.00461 * 10 9 7 30 30 H 0.97007 * 120.00270 * 4.89139 * 13 11 10 31 31 H 1.09003 * 109.46788 * 64.27783 * 15 14 13 32 32 H 1.08999 * 109.46851 * 184.27353 * 15 14 13 33 33 H 1.00905 * 110.99697 * 51.40055 * 16 15 14 34 34 H 1.09000 * 109.47178 * 300.00408 * 17 16 15 35 35 H 1.08998 * 109.46450 * 60.00780 * 17 16 15 36 36 H 1.09004 * 110.02159 * 54.30604 * 18 17 16 37 37 H 1.09005 * 110.48345 * 335.78295 * 19 18 17 38 38 H 1.09001 * 110.48584 * 98.43103 * 19 18 17 39 39 H 1.09004 * 110.71660 * 279.56924 * 20 19 18 40 40 H 1.09004 * 110.92077 * 156.29657 * 20 19 18 41 41 H 1.09005 * 110.48754 * 203.40443 * 21 20 19 42 42 H 1.09006 * 110.60111 * 80.82033 * 21 20 19 43 43 H 1.09007 * 110.02957 * 238.57137 * 22 18 17 44 44 H 1.08996 * 110.03466 * 359.97438 * 22 18 17 45 45 H 1.09000 * 110.03010 * 238.57320 * 23 14 13 46 46 H 1.09002 * 110.03284 * 359.97438 * 23 14 13 47 47 H 1.09004 * 110.48813 * 95.06456 * 24 23 14 48 48 H 1.09002 * 110.48806 * 217.71126 * 24 23 14 49 49 H 1.09007 * 110.75226 * 279.63135 * 25 24 23 50 50 H 1.08990 * 110.75876 * 156.25555 * 25 24 23 51 51 H 1.09003 * 110.48517 * 23.00478 * 26 14 13 52 52 H 1.09003 * 110.48156 * 145.64774 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0029 13 7 2.8442 -6.3431 0.0049 14 6 2.3341 -7.7122 -0.1027 15 6 1.5179 -8.0673 1.1417 16 7 2.3406 -7.8639 2.3415 17 6 1.5556 -8.0893 3.5626 18 6 2.4442 -7.8680 4.7882 19 6 3.5310 -8.9608 4.8572 20 6 3.6766 -9.2554 6.3716 21 6 2.2169 -9.1614 6.8809 22 6 1.6092 -7.9952 6.0745 23 6 1.4622 -7.8524 -1.3628 24 6 2.1351 -8.9220 -2.2476 25 6 3.6168 -8.9109 -1.7965 26 6 3.5065 -8.7016 -0.2658 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7306 0.8928 29 1 3.1246 -3.7321 -0.8871 30 1 3.7987 -6.1854 0.0771 31 1 0.6365 -7.4279 1.1927 32 1 1.2071 -9.1106 1.0868 33 1 2.7562 -6.9444 2.3434 34 1 0.7186 -7.3916 3.5903 35 1 1.1770 -9.1114 3.5676 36 1 2.9079 -6.8827 4.7400 37 1 3.2073 -9.8548 4.3242 38 1 4.4708 -8.5905 4.4477 39 1 4.3026 -8.5036 6.8523 40 1 4.0798 -10.2546 6.5367 41 1 2.1987 -8.9380 7.9476 42 1 1.6792 -10.0874 6.6768 43 1 1.6684 -7.0719 6.6508 44 1 0.5709 -8.2141 5.8255 45 1 0.4575 -8.1733 -1.0878 46 1 1.4182 -6.9016 -1.8941 47 1 1.6893 -9.9005 -2.0689 48 1 2.0549 -8.6517 -3.3005 49 1 4.1559 -8.0854 -2.2613 50 1 4.0965 -9.8631 -2.0226 51 1 4.4271 -8.2704 0.1277 52 1 3.2821 -9.6445 0.2330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732226005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = -88.123374 kcal Electronic energy + Delta-G solvation = -28118.158265 eV Core-core repulsion = 24434.127561 eV Total energy + Delta-G solvation = -3684.030704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.46295 -39.43125 -38.73189 -36.08863 -34.61456 -34.48357 -31.76162 -30.44047 -29.70703 -29.50660 -28.51766 -27.63778 -25.31272 -23.70410 -22.28510 -21.59014 -21.46038 -20.72085 -20.10018 -19.79947 -17.77155 -17.36247 -17.08421 -16.89381 -16.81088 -16.22848 -16.13693 -15.76928 -15.63158 -15.29679 -15.04344 -14.76615 -14.53742 -14.34506 -14.16311 -14.12414 -13.66405 -13.18512 -13.14113 -12.89874 -12.83676 -12.73772 -12.62037 -12.27097 -12.04049 -11.95626 -11.92681 -11.87251 -11.82240 -11.79048 -11.72402 -11.52069 -11.42108 -11.40272 -11.27086 -11.14487 -10.73855 -10.28645 -10.05396 -9.36376 -8.67321 -8.36216 -6.13844 1.26113 1.42002 1.45584 1.55554 1.65349 2.25308 2.32592 2.97818 3.10759 3.31047 3.60829 3.71082 3.76598 3.78744 3.89052 3.94559 4.03418 4.25647 4.29091 4.35574 4.43290 4.49993 4.53568 4.58793 4.60851 4.64513 4.65965 4.71172 4.78466 4.80225 4.84135 4.90019 4.94487 4.96226 4.97719 5.09073 5.10195 5.17035 5.18705 5.26380 5.28314 5.35930 5.39660 5.43414 5.49091 5.51674 5.57974 5.70915 6.00442 6.17743 6.33141 6.59606 7.05068 7.31628 8.72643 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008487 B = 0.003085 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.411413 B = 9074.681812 C =11514.887163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.081 0.919 9 S -0.148 6.148 10 C -0.131 4.131 11 C 0.535 3.465 12 O -0.554 6.554 13 N -0.704 5.704 14 C 0.180 3.820 15 C 0.057 3.943 16 N -0.668 5.668 17 C 0.069 3.931 18 C -0.088 4.088 19 C -0.097 4.097 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.098 4.098 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.413 0.587 31 H 0.011 0.989 32 H 0.087 0.913 33 H 0.334 0.666 34 H 0.003 0.997 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -23.515 6.084 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.079 5.921 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.431 6.431 13 N -0.359 5.359 14 C 0.094 3.906 15 C -0.074 4.074 16 N -0.298 5.298 17 C -0.061 4.061 18 C -0.107 4.107 19 C -0.134 4.134 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.159 4.159 26 C -0.136 4.136 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.029 0.971 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.021 0.979 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.104 0.896 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.029 -24.410 6.057 27.077 hybrid contribution 0.772 2.680 -0.063 2.790 sum 10.801 -21.730 5.994 24.996 Atomic orbital electron populations 1.70173 1.07968 1.28649 1.48006 1.26118 0.95947 1.03296 0.93738 0.85026 0.77842 0.75766 0.79524 1.18664 1.20387 1.18617 1.23176 0.95300 0.92169 1.58905 0.90069 1.85535 1.10457 0.99058 1.97023 1.23399 1.03504 0.94983 1.06358 1.19964 0.86442 0.86377 0.75190 1.90688 1.17142 1.85888 1.49386 1.46048 1.10255 1.04696 1.74871 1.21103 0.95159 0.81039 0.93316 1.22348 0.94336 1.00824 0.89875 1.60623 1.33383 1.34979 1.00796 1.22084 0.93973 1.00372 0.89635 1.21736 0.96166 0.99539 0.93238 1.22211 0.97664 0.97694 0.95874 1.22556 0.96387 1.01774 0.95702 1.22334 0.96149 0.97961 0.99378 1.22200 0.99185 0.99217 0.95635 1.22423 0.98858 0.99311 0.95656 1.22373 0.96275 0.98346 0.98739 1.22543 0.95666 1.02623 0.95059 1.22467 0.96148 0.98402 0.96552 0.92016 0.87624 0.87751 0.74925 0.97063 0.89439 0.84861 0.97883 0.90450 0.92420 0.91384 0.91766 0.91790 0.90717 0.91321 0.91327 0.92227 0.92207 0.92609 0.93960 0.90285 0.91790 0.91709 0.89374 0.89638 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.55 -31.44 9.50 67.96 0.65 -30.79 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 10 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 11 C 0.53 19.15 6.89 87.66 0.60 19.76 16 12 O -0.55 -24.70 13.12 -3.03 -0.04 -24.74 16 13 N -0.70 -17.25 4.14 -419.63 -1.74 -18.98 16 14 C 0.18 3.96 0.68 4.33 0.00 3.96 16 15 C 0.06 1.38 4.15 86.30 0.36 1.74 16 16 N -0.67 -14.55 6.10 -513.90 -3.14 -17.69 16 17 C 0.07 1.51 4.73 86.30 0.41 1.92 16 18 C -0.09 -1.68 3.09 -10.07 -0.03 -1.71 16 19 C -0.10 -1.54 6.18 31.70 0.20 -1.34 16 20 C -0.13 -1.74 6.91 31.91 0.22 -1.52 16 21 C -0.12 -1.74 6.83 31.66 0.22 -1.52 16 22 C -0.12 -2.22 6.46 31.32 0.20 -2.02 16 23 C -0.12 -3.12 5.20 31.32 0.16 -2.95 16 24 C -0.12 -2.11 6.83 31.67 0.22 -1.89 16 25 C -0.12 -1.69 6.91 31.89 0.22 -1.47 16 26 C -0.10 -1.45 5.81 31.67 0.18 -1.26 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 29 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 30 H 0.41 7.58 8.23 -92.70 -0.76 6.81 16 31 H 0.01 0.37 6.60 -2.39 -0.02 0.36 16 32 H 0.09 1.89 8.06 -2.39 -0.02 1.87 16 33 H 0.33 8.00 7.80 -89.69 -0.70 7.30 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.08 1.57 8.02 -2.39 -0.02 1.56 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.09 7.77 -2.38 -0.02 1.07 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.06 1.11 7.67 -2.39 -0.02 1.09 16 45 H 0.06 1.54 7.67 -2.39 -0.02 1.52 16 46 H 0.04 1.34 6.93 -2.39 -0.02 1.33 16 47 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.09 1.09 7.70 -2.39 -0.02 1.07 16 52 H 0.09 1.26 7.79 -2.39 -0.02 1.24 16 Total: -1.00 -72.62 414.21 0.18 -72.44 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.57 Total: 31.20 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.51 Total: -22.59 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.59 Total: -92.76 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.04 Total: -24.74 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -72.62 0.18 -72.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732226005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.681 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds