Wall clock time and date at job start Sat Apr 11 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50694 * 120.00479 * 2 1 4 4 C 1.31006 * 119.99839 * 179.97438 * 2 1 3 5 5 C 1.50704 * 119.99737 * 173.52562 * 4 2 1 6 6 N 1.46897 * 109.47227 * 235.98052 * 5 4 2 7 7 C 1.46900 * 111.00287 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47422 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47178 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.50033 * 54.93572 * 9 8 7 11 11 C 1.53044 * 109.49845 * 175.00272 * 9 8 7 12 12 C 1.53041 * 109.53785 * 181.31683 * 11 9 8 13 13 C 1.53195 * 109.31239 * 298.63163 * 12 11 9 14 14 N 1.46924 * 108.77375 * 54.63510 * 13 12 11 15 15 C 1.34782 * 120.63150 * 126.41414 * 14 13 12 16 16 O 1.21278 * 120.00197 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99743 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47281 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00275 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00185 * 180.02562 * 19 18 17 22 22 N 1.31630 * 119.99776 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47218 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47376 * 119.99740 * 23 21 19 26 26 H 1.48500 * 109.47428 * 239.99997 * 23 21 19 27 27 C 1.46929 * 118.74123 * 306.39290 * 14 13 12 28 28 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47302 * 299.99996 * 1 2 3 30 30 H 1.08996 * 109.47043 * 60.00058 * 1 2 3 31 31 H 1.08998 * 109.47167 * 265.02374 * 3 2 1 32 32 H 1.09005 * 109.47132 * 25.02176 * 3 2 1 33 33 H 1.08996 * 109.47806 * 145.02292 * 3 2 1 34 34 H 1.08000 * 120.00389 * 353.80415 * 4 2 1 35 35 H 1.08997 * 109.46960 * 355.98869 * 5 4 2 36 36 H 1.09008 * 109.46765 * 115.98419 * 5 4 2 37 37 H 1.00906 * 110.99721 * 56.04817 * 6 5 4 38 38 H 1.08994 * 109.47087 * 300.00923 * 7 6 5 39 39 H 1.09002 * 109.46814 * 60.00536 * 7 6 5 40 40 H 1.09003 * 109.46957 * 300.00303 * 8 7 6 41 41 H 1.09002 * 109.46906 * 60.00325 * 8 7 6 42 42 H 1.09002 * 109.45818 * 301.33541 * 11 9 8 43 43 H 1.09000 * 109.46188 * 61.30885 * 11 9 8 44 44 H 1.08996 * 109.50057 * 58.58117 * 12 11 9 45 45 H 1.09001 * 109.49453 * 178.64843 * 12 11 9 46 46 H 1.08996 * 109.58616 * 174.42226 * 13 12 11 47 47 H 1.09001 * 109.58785 * 294.70976 * 13 12 11 48 48 H 1.08994 * 109.47146 * 300.00414 * 17 15 14 49 49 H 1.09007 * 109.46792 * 59.99789 * 17 15 14 50 50 H 0.97006 * 119.99845 * 179.97438 * 22 21 19 51 51 H 1.08994 * 109.58541 * 293.82012 * 27 14 13 52 52 H 1.09002 * 109.58330 * 173.39595 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 0.0005 5 6 3.6618 -1.1388 -0.1467 6 7 4.0392 -1.9789 -1.2910 7 6 5.4975 -2.0063 -1.4658 8 6 5.8510 -2.8887 -2.6647 9 6 7.3698 -2.9177 -2.8463 10 1 7.8414 -3.2368 -1.9169 11 6 7.7319 -3.8969 -3.9654 12 6 9.2529 -3.9512 -4.1257 13 6 9.7715 -2.5625 -4.5120 14 7 9.3042 -1.5892 -3.5156 15 6 10.1770 -0.7773 -2.8866 16 8 9.7787 0.0222 -2.0663 17 6 11.6481 -0.8633 -3.2025 18 16 12.5514 0.3458 -2.2035 19 6 14.1944 0.0360 -2.7597 20 1 14.3776 -0.7221 -3.5068 21 6 15.2530 0.7662 -2.2377 22 7 15.0297 1.6899 -1.3269 23 14 16.9947 0.4383 -2.8279 24 1 16.9769 -0.6415 -3.8472 25 1 17.5557 1.6759 -3.4270 26 1 17.8363 0.0193 -1.6784 27 6 7.8671 -1.5172 -3.2181 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.5194 1.5751 -1.0238 32 1 1.6358 2.0853 0.4347 33 1 3.1714 1.1987 0.5891 34 1 1.6267 -2.0671 0.1019 35 1 4.0135 -0.1204 -0.3118 36 1 4.1148 -1.5368 0.7614 37 1 3.5800 -1.6688 -2.1343 38 1 5.8615 -0.9939 -1.6403 39 1 5.9636 -2.4101 -0.5671 40 1 5.4868 -3.9012 -2.4905 41 1 5.3849 -2.4845 -3.5633 42 1 7.3575 -4.8894 -3.7146 43 1 7.2801 -3.5638 -4.8997 44 1 9.7072 -4.2603 -3.1844 45 1 9.5110 -4.6667 -4.9065 46 1 10.8613 -2.5716 -4.5308 47 1 9.3913 -2.2914 -5.4970 48 1 12.0104 -1.8659 -2.9758 49 1 11.8055 -0.6506 -4.2600 50 1 15.7697 2.2000 -0.9618 51 1 7.3296 -1.1599 -4.0964 52 1 7.7004 -0.8366 -2.3832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732266147.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:19 Heat of formation + Delta-G solvation = -64.610481 kcal Electronic energy + Delta-G solvation = -26745.802761 eV Core-core repulsion = 23062.791652 eV Total energy + Delta-G solvation = -3683.011108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.24810 -39.04757 -38.32670 -36.51662 -34.63792 -34.58911 -32.90475 -31.32522 -30.01192 -28.72002 -27.81852 -27.61264 -26.13538 -24.71493 -23.66233 -22.28429 -21.44794 -20.37205 -19.48295 -18.76134 -18.19307 -17.35150 -16.93938 -16.88253 -16.63034 -16.14276 -15.98631 -15.63506 -15.49099 -15.19700 -15.02130 -14.69987 -14.54635 -14.44497 -14.32548 -14.08069 -13.98220 -13.48455 -13.33187 -13.26113 -13.21420 -13.15848 -12.92512 -12.78297 -12.61846 -12.54195 -12.38408 -12.16004 -11.92704 -11.84228 -11.70802 -11.64821 -11.57420 -11.21151 -11.17210 -10.85671 -10.27738 -9.68556 -9.65843 -9.41181 -8.69462 -8.36112 -6.14868 1.17178 1.24425 1.40745 1.44986 1.54992 1.56825 2.10531 2.25975 2.98162 3.20924 3.24344 3.62347 3.80613 3.85887 3.91554 3.93238 4.04479 4.08576 4.19229 4.24305 4.29984 4.31045 4.40791 4.41138 4.47474 4.54255 4.59308 4.63068 4.64077 4.68223 4.82563 4.84560 4.85697 4.91315 4.92657 4.95966 4.96853 5.07745 5.13709 5.15249 5.20032 5.25614 5.32199 5.40452 5.49810 5.59659 5.73516 5.88104 6.04229 6.18527 6.29103 6.45736 7.05070 7.12757 8.73478 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.001948 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.384234 B =14370.600902 C =16064.148874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.129 4.129 3 C -0.126 4.126 4 C -0.170 4.170 5 C 0.082 3.918 6 N -0.683 5.683 7 C 0.056 3.944 8 C -0.094 4.094 9 C -0.093 4.093 10 H 0.056 0.944 11 C -0.107 4.107 12 C -0.132 4.132 13 C 0.096 3.904 14 N -0.607 5.607 15 C 0.530 3.470 16 O -0.569 6.569 17 C -0.123 4.123 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.114 3.886 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.346 0.654 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.271 0.729 51 H 0.082 0.918 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.042 -12.521 -6.633 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.130 4.130 3 C -0.182 4.182 4 C -0.188 4.188 5 C -0.047 4.047 6 N -0.314 5.314 7 C -0.074 4.074 8 C -0.132 4.132 9 C -0.113 4.113 10 H 0.075 0.925 11 C -0.144 4.144 12 C -0.170 4.170 13 C -0.025 4.025 14 N -0.340 5.340 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.274 4.274 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.008 4.008 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.124 0.876 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.100 0.900 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.582 -11.814 -4.965 29.510 hybrid contribution 1.853 0.327 -0.926 2.098 sum -24.729 -11.486 -5.892 27.895 Atomic orbital electron populations 1.20866 0.90786 1.02929 1.02683 1.21917 0.96865 0.94960 0.99294 1.20910 0.99842 0.95303 1.02158 1.22566 0.94682 0.97905 1.03677 1.21018 0.93873 0.95262 0.94533 1.60456 1.07308 1.55881 1.07783 1.22021 0.87905 0.98192 0.99245 1.21429 0.93323 1.01073 0.97385 1.21443 0.96070 0.94294 0.99483 0.92517 1.21548 0.95160 0.99409 0.98305 1.21925 0.96581 0.95724 1.02728 1.22081 1.00749 0.88303 0.91417 1.48135 1.07224 1.37170 1.41503 1.20157 0.87815 0.80070 0.80143 1.90662 1.79853 1.38925 1.35404 1.23363 0.94423 1.04608 1.04965 1.85595 1.03382 1.48361 1.55323 1.23226 0.92213 1.25367 1.28468 0.89876 1.26148 1.04508 0.93942 0.94580 1.70198 1.33931 1.22676 1.28021 0.84884 0.75878 0.78641 0.78409 1.17906 1.19883 1.19928 1.21799 0.79281 0.98324 1.01407 0.91581 0.91128 0.90719 0.91539 0.90859 0.92237 0.86657 0.94582 0.91561 0.83584 0.96141 0.92335 0.89823 0.90360 0.90023 0.90107 0.92776 0.87937 0.89688 0.89043 0.87632 0.87485 0.91988 0.90025 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.09 71.23 0.72 -0.50 16 2 C -0.13 -1.85 6.05 -16.50 -0.10 -1.95 16 3 C -0.13 -1.77 8.93 71.23 0.64 -1.13 16 4 C -0.17 -2.69 9.37 25.64 0.24 -2.45 16 5 C 0.08 1.47 5.75 85.56 0.49 1.96 16 6 N -0.68 -11.72 6.49 -517.94 -3.36 -15.08 16 7 C 0.06 1.04 5.45 86.30 0.47 1.51 16 8 C -0.09 -1.36 4.94 30.59 0.15 -1.21 16 9 C -0.09 -1.65 2.34 -10.72 -0.03 -1.67 16 10 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 11 C -0.11 -1.37 5.17 30.62 0.16 -1.21 16 12 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 13 C 0.10 1.86 6.34 86.36 0.55 2.41 16 14 N -0.61 -16.95 2.97 -818.90 -2.43 -19.38 16 15 C 0.53 20.88 7.72 87.66 0.68 21.56 16 16 O -0.57 -27.69 15.27 -3.02 -0.05 -27.74 16 17 C -0.12 -5.06 4.50 71.24 0.32 -4.74 16 18 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 19 C -0.54 -31.44 9.50 67.95 0.65 -30.80 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.74 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 23 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 C 0.11 2.71 5.33 86.36 0.46 3.17 16 28 H 0.07 0.64 7.79 -2.39 -0.02 0.62 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 33 H 0.06 0.93 6.67 -2.39 -0.02 0.92 16 34 H 0.12 1.76 7.85 -2.91 -0.02 1.74 16 35 H 0.04 0.69 5.72 -2.39 -0.01 0.67 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.35 5.13 8.72 -89.69 -0.78 4.35 16 38 H 0.02 0.44 6.70 -2.39 -0.02 0.43 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.11 3.97 7.69 -2.40 -0.02 3.96 16 49 H 0.11 4.00 7.94 -2.39 -0.02 3.98 16 50 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 51 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.06 1.91 5.73 -2.39 -0.01 1.89 16 Total: -1.00 -76.23 421.41 1.46 -74.77 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.10 Total: 23.33 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 6.05 Total: -15.59 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -5.51 Total: -90.68 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -76.23 1.46 -74.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732266147.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.163 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds