Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00188 * 2 1 4 4 O 1.21273 * 120.00151 * 4.45862 * 3 2 1 5 5 C 1.50700 * 119.99656 * 184.45144 * 3 2 1 6 6 C 1.50699 * 115.55316 * 294.20223 * 5 3 2 7 7 O 1.21285 * 119.99663 * 113.59743 * 6 5 3 8 8 N 1.34770 * 120.00202 * 293.32294 * 6 5 3 9 9 C 1.46497 * 119.99907 * 354.11385 * 8 6 5 10 10 C 1.46501 * 119.99968 * 174.10632 * 8 6 5 11 11 C 1.52997 * 109.46942 * 90.00432 * 10 8 6 12 12 N 1.46899 * 109.47495 * 179.97438 * 11 10 8 13 13 C 1.46899 * 111.00038 * 293.95805 * 12 11 10 14 14 C 1.46899 * 111.00244 * 169.99688 * 12 11 10 15 15 C 1.50701 * 109.46963 * 190.00465 * 14 12 11 16 16 O 1.21286 * 120.00279 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99884 * 180.02562 * 15 14 12 18 18 C 1.37095 * 120.00265 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99805 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00292 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00125 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46965 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47174 * 120.00005 * 22 20 18 25 25 H 1.48503 * 109.47183 * 240.00265 * 22 20 18 26 26 C 1.53002 * 117.49694 * 79.88006 * 5 3 2 27 27 C 1.53004 * 117.49586 * 148.53563 * 5 3 2 28 28 H 1.08990 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46469 * 299.99816 * 1 2 3 30 30 H 1.09004 * 109.46863 * 59.99283 * 1 2 3 31 31 H 0.97001 * 119.99919 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47785 * 90.69654 * 9 8 6 33 33 H 1.09000 * 109.47243 * 210.69372 * 9 8 6 34 34 H 1.09001 * 109.47261 * 330.69152 * 9 8 6 35 35 H 1.08999 * 109.47369 * 210.00168 * 10 8 6 36 36 H 1.08999 * 109.47157 * 330.00528 * 10 8 6 37 37 H 1.08999 * 109.47376 * 300.00201 * 11 10 8 38 38 H 1.09005 * 109.47494 * 60.00141 * 11 10 8 39 39 H 1.09001 * 109.47240 * 59.99352 * 13 12 11 40 40 H 1.09002 * 109.46806 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46811 * 299.99393 * 13 12 11 42 42 H 1.08996 * 109.47115 * 310.00108 * 14 12 11 43 43 H 1.08997 * 109.47226 * 70.00265 * 14 12 11 44 44 H 0.97003 * 119.99779 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00201 * 179.97438 * 21 20 18 46 46 H 1.09006 * 117.49898 * 214.99435 * 26 5 3 47 47 H 1.08994 * 117.50234 * 0.02562 * 26 5 3 48 48 H 1.09009 * 117.49628 * 359.97438 * 27 5 3 49 49 H 1.09003 * 117.49952 * 144.99635 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5354 2.2159 0.0816 5 6 3.6425 1.1690 -0.1013 6 6 4.3737 0.5648 1.0697 7 8 5.0076 -0.4592 0.9259 8 7 4.3277 1.1651 2.2755 9 6 3.6767 2.4695 2.4199 10 6 4.9286 0.5131 3.4417 11 6 6.3915 0.9427 3.5687 12 7 6.9939 0.2895 4.7385 13 6 6.3795 0.7689 5.9837 14 6 8.4495 0.4862 4.7598 15 6 9.0595 -0.3920 5.8218 16 8 8.3514 -1.1106 6.4950 17 7 10.3920 -0.3781 6.0242 18 6 10.9469 -1.1765 6.9906 19 1 10.3163 -1.8164 7.5901 20 6 12.3206 -1.1626 7.1990 21 7 13.0879 -0.3836 6.4699 22 14 13.0767 -2.2500 8.5163 23 1 12.0057 -3.0245 9.1935 24 1 14.0447 -3.1859 7.8901 25 1 13.7804 -1.4036 9.5131 26 6 4.2572 0.9835 -1.4901 27 6 4.3013 2.3542 -0.8101 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 2.6248 2.3254 2.6667 33 1 4.1631 3.0321 3.2168 34 1 3.7579 3.0217 1.4836 35 1 4.3852 0.8040 4.3407 36 1 4.8768 -0.5688 3.3199 37 1 6.9349 0.6519 2.6697 38 1 6.4433 2.0247 3.6905 39 1 5.3122 0.5478 5.9709 40 1 6.8437 0.2689 6.8338 41 1 6.5265 1.8455 6.0703 42 1 8.8660 0.2231 3.7875 43 1 8.6719 1.5303 4.9799 44 1 10.9583 0.1969 5.4861 45 1 14.0468 -0.3736 6.6156 46 1 5.1905 0.4242 -1.5568 47 1 3.5742 0.8605 -2.3305 48 1 3.6471 3.1323 -1.2036 49 1 5.2636 2.6967 -0.4295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732594403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -58.704082 kcal Electronic energy + Delta-G solvation = -29869.228113 eV Core-core repulsion = 25640.179910 eV Total energy + Delta-G solvation = -4229.048202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.20509 -39.46767 -38.58562 -37.02710 -36.30410 -35.48050 -35.01090 -33.81856 -31.23128 -30.16499 -28.11102 -27.75554 -26.91812 -25.81868 -24.68911 -23.58475 -22.94689 -21.76861 -20.84541 -19.57385 -19.12548 -18.23035 -17.81670 -16.73373 -16.61240 -16.30069 -16.15763 -15.56365 -15.43547 -15.20480 -14.88203 -14.77535 -14.52981 -14.13962 -13.93525 -13.51718 -13.42040 -13.31486 -13.23053 -13.10292 -12.91485 -12.76024 -12.48671 -12.09993 -12.08061 -12.03668 -11.54191 -11.49325 -11.28876 -11.25958 -11.10146 -10.93052 -10.79772 -10.48156 -10.32448 -10.20375 -9.97017 -9.62348 -9.46513 -9.01181 -8.40621 -7.95580 -7.84003 -6.39434 -3.80041 1.94596 2.18935 2.52634 2.61593 3.17910 3.28262 3.30675 3.35663 3.92996 3.95819 4.11597 4.15327 4.29864 4.30961 4.34740 4.76842 4.85022 4.92582 5.02977 5.03555 5.09431 5.12131 5.19261 5.25006 5.28292 5.31967 5.36412 5.43296 5.50794 5.62151 5.65167 5.68714 5.81800 5.87286 5.89373 5.96869 6.03554 6.23918 6.31437 6.54423 6.92808 7.02124 7.26257 7.39687 7.57740 7.67106 7.81519 8.09147 8.64491 9.20693 9.57191 10.09098 10.78480 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.001904 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.921573 B =14704.865604 C =14967.661314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.561 3.439 4 O -0.527 6.527 5 C -0.199 4.199 6 C 0.553 3.447 7 O -0.517 6.517 8 N -0.606 5.606 9 C 0.075 3.925 10 C 0.119 3.881 11 C 0.043 3.957 12 N -0.515 5.515 13 C 0.019 3.981 14 C 0.048 3.952 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.127 4.127 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.407 0.593 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.030 0.970 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.014 0.986 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.117 0.883 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.946 7.416 -16.152 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.345 3.655 4 O -0.403 6.403 5 C -0.205 4.205 6 C 0.338 3.662 7 O -0.392 6.392 8 N -0.339 5.339 9 C -0.068 4.068 10 C -0.003 4.003 11 C -0.086 4.086 12 N -0.240 5.240 13 C -0.128 4.128 14 C -0.084 4.084 15 C 0.231 3.769 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.426 4.426 19 H 0.122 0.878 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.167 4.167 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.032 0.968 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.135 0.865 47 H 0.126 0.874 48 H 0.133 0.867 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.443 6.652 -15.721 28.197 hybrid contribution 1.146 0.426 0.425 1.294 sum -21.296 7.078 -15.297 27.159 Atomic orbital electron populations 1.21596 0.78920 1.02667 1.02468 1.45766 1.08021 1.08835 1.75265 1.19039 0.86824 0.83864 0.75755 1.90717 1.69381 1.31356 1.48802 1.21462 0.93007 1.09750 0.96326 1.19076 0.80561 0.84043 0.82514 1.90778 1.41460 1.23891 1.83108 1.47788 1.56726 1.21051 1.08364 1.21916 0.97491 0.83780 1.03565 1.21536 0.92893 0.99464 0.86389 1.22424 0.95298 0.95999 0.94879 1.61456 1.03075 1.57466 1.01975 1.22605 0.99494 0.96836 0.93912 1.21852 0.88052 0.98129 1.00321 1.19718 0.83083 0.87008 0.87119 1.90479 1.60629 1.44322 1.50665 1.41874 1.05327 1.39197 1.33797 1.19747 0.90941 1.19594 1.12363 0.87850 1.25266 0.96167 0.97938 0.98697 1.69622 1.05637 1.38863 1.40262 0.85800 0.78981 0.79462 0.80093 1.19223 1.20764 1.20825 1.23131 1.03017 0.99283 0.90997 1.23131 1.01967 0.91481 1.00170 0.90296 0.91938 0.92028 0.75839 0.92429 0.90746 0.90227 0.90102 0.88692 0.90467 0.95172 0.92184 0.88436 0.96762 0.89389 0.93497 0.77507 0.91965 0.86521 0.87433 0.86700 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.71 59.85 0.64 1.12 16 2 N -0.73 -5.37 5.71 -67.08 -0.38 -5.75 16 3 C 0.56 5.28 6.38 -10.98 -0.07 5.21 16 4 O -0.53 -6.18 16.59 5.56 0.09 -6.09 16 5 C -0.20 -1.78 1.22 -156.81 -0.19 -1.97 16 6 C 0.55 6.37 6.90 -10.99 -0.08 6.29 16 7 O -0.52 -7.68 16.37 5.55 0.09 -7.59 16 8 N -0.61 -6.48 2.87 -181.58 -0.52 -7.00 16 9 C 0.08 0.64 9.54 59.85 0.57 1.21 16 10 C 0.12 1.46 5.29 -4.04 -0.02 1.43 16 11 C 0.04 0.60 5.28 -3.83 -0.02 0.57 16 12 N -0.52 -8.85 4.50 -244.37 -1.10 -9.94 16 13 C 0.02 0.31 8.96 60.06 0.54 0.85 16 14 C 0.05 0.89 5.45 -4.98 -0.03 0.86 16 15 C 0.45 10.69 7.48 -10.98 -0.08 10.61 16 16 O -0.58 -15.67 13.91 5.55 0.08 -15.59 16 17 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 22 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.13 -0.91 9.76 -26.69 -0.26 -1.17 16 27 C -0.13 -0.93 8.40 -26.69 -0.22 -1.15 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.41 2.61 8.83 -40.82 -0.36 2.25 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.08 0.64 5.87 -51.93 -0.30 0.34 16 35 H 0.08 0.88 6.48 -51.93 -0.34 0.54 16 36 H 0.09 1.36 7.52 -51.93 -0.39 0.97 16 37 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 39 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 40 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 41 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.12 0.90 8.01 -51.93 -0.42 0.49 16 47 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.11 0.76 8.00 -51.92 -0.42 0.35 16 49 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -34.82 407.26 -7.17 -41.99 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.74 Total: 10.44 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 0.54 Total: 15.84 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -1.34 Total: -61.36 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: 0.26 Total: -29.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.82 -7.17 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732594403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.716 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds