Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00188 * 2 1 4 4 O 1.21273 * 120.00151 * 4.45862 * 3 2 1 5 5 C 1.50700 * 119.99656 * 184.45144 * 3 2 1 6 6 C 1.50699 * 115.55316 * 294.20223 * 5 3 2 7 7 O 1.21285 * 119.99663 * 113.59743 * 6 5 3 8 8 N 1.34770 * 120.00202 * 293.32294 * 6 5 3 9 9 C 1.46497 * 119.99907 * 354.11385 * 8 6 5 10 10 C 1.46501 * 119.99968 * 174.10632 * 8 6 5 11 11 C 1.52997 * 109.46942 * 90.00432 * 10 8 6 12 12 N 1.46899 * 109.47495 * 179.97438 * 11 10 8 13 13 C 1.46899 * 111.00038 * 293.95805 * 12 11 10 14 14 C 1.46899 * 111.00244 * 169.99688 * 12 11 10 15 15 C 1.50701 * 109.46963 * 190.00465 * 14 12 11 16 16 O 1.21286 * 120.00279 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99884 * 180.02562 * 15 14 12 18 18 C 1.37095 * 120.00265 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99805 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00292 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00125 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46965 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47174 * 120.00005 * 22 20 18 25 25 H 1.48503 * 109.47183 * 240.00265 * 22 20 18 26 26 C 1.53002 * 117.49694 * 79.88006 * 5 3 2 27 27 C 1.53004 * 117.49586 * 148.53563 * 5 3 2 28 28 H 1.08990 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46469 * 299.99816 * 1 2 3 30 30 H 1.09004 * 109.46863 * 59.99283 * 1 2 3 31 31 H 0.97001 * 119.99919 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47785 * 90.69654 * 9 8 6 33 33 H 1.09000 * 109.47243 * 210.69372 * 9 8 6 34 34 H 1.09001 * 109.47261 * 330.69152 * 9 8 6 35 35 H 1.08999 * 109.47369 * 210.00168 * 10 8 6 36 36 H 1.08999 * 109.47157 * 330.00528 * 10 8 6 37 37 H 1.08999 * 109.47376 * 300.00201 * 11 10 8 38 38 H 1.09005 * 109.47494 * 60.00141 * 11 10 8 39 39 H 1.09001 * 109.47240 * 59.99352 * 13 12 11 40 40 H 1.09002 * 109.46806 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46811 * 299.99393 * 13 12 11 42 42 H 1.08996 * 109.47115 * 310.00108 * 14 12 11 43 43 H 1.08997 * 109.47226 * 70.00265 * 14 12 11 44 44 H 0.97003 * 119.99779 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00201 * 179.97438 * 21 20 18 46 46 H 1.09006 * 117.49898 * 214.99435 * 26 5 3 47 47 H 1.08994 * 117.50234 * 0.02562 * 26 5 3 48 48 H 1.09009 * 117.49628 * 359.97438 * 27 5 3 49 49 H 1.09003 * 117.49952 * 144.99635 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5354 2.2159 0.0816 5 6 3.6425 1.1690 -0.1013 6 6 4.3737 0.5648 1.0697 7 8 5.0076 -0.4592 0.9259 8 7 4.3277 1.1651 2.2755 9 6 3.6767 2.4695 2.4199 10 6 4.9286 0.5131 3.4417 11 6 6.3915 0.9427 3.5687 12 7 6.9939 0.2895 4.7385 13 6 6.3795 0.7689 5.9837 14 6 8.4495 0.4862 4.7598 15 6 9.0595 -0.3920 5.8218 16 8 8.3514 -1.1106 6.4950 17 7 10.3920 -0.3781 6.0242 18 6 10.9469 -1.1765 6.9906 19 1 10.3163 -1.8164 7.5901 20 6 12.3206 -1.1626 7.1990 21 7 13.0879 -0.3836 6.4699 22 14 13.0767 -2.2500 8.5163 23 1 12.0057 -3.0245 9.1935 24 1 14.0447 -3.1859 7.8901 25 1 13.7804 -1.4036 9.5131 26 6 4.2572 0.9835 -1.4901 27 6 4.3013 2.3542 -0.8101 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 2.6248 2.3254 2.6667 33 1 4.1631 3.0321 3.2168 34 1 3.7579 3.0217 1.4836 35 1 4.3852 0.8040 4.3407 36 1 4.8768 -0.5688 3.3199 37 1 6.9349 0.6519 2.6697 38 1 6.4433 2.0247 3.6905 39 1 5.3122 0.5478 5.9709 40 1 6.8437 0.2689 6.8338 41 1 6.5265 1.8455 6.0703 42 1 8.8660 0.2231 3.7875 43 1 8.6719 1.5303 4.9799 44 1 10.9583 0.1969 5.4861 45 1 14.0468 -0.3736 6.6156 46 1 5.1905 0.4242 -1.5568 47 1 3.5742 0.8605 -2.3305 48 1 3.6471 3.1323 -1.2036 49 1 5.2636 2.6967 -0.4295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732594403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -86.314918 kcal Electronic energy + Delta-G solvation = -29870.425408 eV Core-core repulsion = 25640.179910 eV Total energy + Delta-G solvation = -4230.245498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.97473 -40.48782 -40.14357 -38.27206 -37.10755 -36.56313 -35.82248 -35.66644 -33.28532 -31.30291 -29.23152 -28.66865 -27.71476 -27.15680 -26.16126 -24.61870 -23.51990 -22.77645 -21.80991 -21.00868 -20.29793 -19.86000 -19.00701 -17.91172 -17.61959 -17.26649 -17.02348 -16.67625 -16.54820 -16.50829 -16.22346 -15.89432 -15.62736 -15.47333 -15.25754 -14.94697 -14.74334 -14.18271 -14.06929 -13.98883 -13.82352 -13.76842 -13.46325 -13.26585 -13.14830 -13.13838 -12.99714 -12.63695 -12.60932 -12.53239 -12.39762 -12.22984 -12.11502 -11.95029 -11.66686 -11.46637 -11.20745 -10.82273 -10.34614 -10.23751 -10.00235 -9.84388 -9.23203 -8.46406 -5.94984 1.16810 1.36474 1.39181 1.41584 1.55886 1.71273 2.02257 2.04811 2.28972 2.65341 2.82339 3.20148 3.29221 3.41899 3.54707 3.67760 3.73585 3.89112 4.01963 4.18144 4.25920 4.35157 4.38926 4.41180 4.49063 4.52698 4.54139 4.58762 4.61920 4.63140 4.65167 4.78407 4.82373 4.85089 4.90191 4.92565 5.07880 5.20452 5.29835 5.34753 5.41659 5.84342 6.04930 6.13632 6.21231 6.32328 6.60719 6.93551 7.02187 7.13228 7.56288 8.12117 8.71325 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.001904 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.921573 B =14704.865604 C =14967.661314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.561 3.439 4 O -0.553 6.553 5 C -0.209 4.209 6 C 0.552 3.448 7 O -0.558 6.558 8 N -0.603 5.603 9 C 0.076 3.924 10 C 0.126 3.874 11 C 0.053 3.947 12 N -0.538 5.538 13 C 0.025 3.975 14 C 0.060 3.940 15 C 0.442 3.558 16 O -0.613 6.613 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.412 0.588 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.565 8.523 -16.891 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.374 5.374 3 C 0.345 3.655 4 O -0.431 6.431 5 C -0.216 4.216 6 C 0.339 3.661 7 O -0.435 6.435 8 N -0.335 5.335 9 C -0.066 4.066 10 C 0.003 3.997 11 C -0.076 4.076 12 N -0.263 5.263 13 C -0.123 4.123 14 C -0.071 4.071 15 C 0.230 3.770 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.460 4.460 19 H 0.097 0.903 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.156 4.156 27 C -0.156 4.156 28 H 0.124 0.876 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.247 0.753 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.119 0.881 43 H 0.088 0.912 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.082 7.782 -16.480 29.409 hybrid contribution 1.262 0.077 0.627 1.411 sum -21.820 7.858 -15.853 28.092 Atomic orbital electron populations 1.21744 0.77760 1.04373 1.02042 1.45845 1.08887 1.08541 1.74092 1.19090 0.86896 0.83959 0.75508 1.90701 1.69844 1.32228 1.50312 1.21370 0.92659 1.11435 0.96091 1.19468 0.80013 0.83455 0.83173 1.90758 1.43334 1.25638 1.83815 1.47841 1.56217 1.21705 1.07738 1.22038 0.97379 0.82660 1.04547 1.21369 0.92455 0.98200 0.87675 1.22362 0.95559 0.96913 0.92744 1.61383 1.02303 1.59119 1.03480 1.22495 1.00308 0.97486 0.91993 1.21702 0.88996 0.97856 0.98563 1.20709 0.82365 0.86649 0.87322 1.90458 1.61319 1.45877 1.52196 1.41941 1.06139 1.39369 1.33795 1.19694 0.91582 1.20928 1.13801 0.90275 1.26057 0.95989 0.98927 1.00491 1.69681 1.06132 1.39391 1.41036 0.84857 0.77914 0.77857 0.77614 1.19785 1.19693 1.19532 1.23208 1.02817 0.99146 0.90472 1.23221 1.01998 0.91315 0.99063 0.87608 0.92778 0.91985 0.75313 0.92529 0.89023 0.89661 0.88343 0.91222 0.91673 0.92929 0.89861 0.92509 0.94697 0.88067 0.91156 0.77079 0.91334 0.87205 0.85763 0.85895 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.71 127.77 1.37 2.18 16 2 N -0.72 -9.83 5.71 -484.53 -2.77 -12.60 16 3 C 0.56 9.89 6.38 87.66 0.56 10.45 16 4 O -0.55 -12.30 16.59 -3.01 -0.05 -12.35 16 5 C -0.21 -3.49 1.22 -53.67 -0.07 -3.55 16 6 C 0.55 12.29 6.90 87.66 0.60 12.90 16 7 O -0.56 -16.62 16.37 -3.04 -0.05 -16.67 16 8 N -0.60 -12.02 2.87 -846.78 -2.43 -14.46 16 9 C 0.08 1.11 9.54 127.77 1.22 2.33 16 10 C 0.13 2.90 5.29 86.38 0.46 3.36 16 11 C 0.05 1.36 5.28 86.30 0.46 1.81 16 12 N -0.54 -17.91 4.50 -927.06 -4.17 -22.08 16 13 C 0.02 0.77 8.96 127.69 1.14 1.91 16 14 C 0.06 2.18 5.45 85.56 0.47 2.64 16 15 C 0.44 21.59 7.48 87.66 0.66 22.25 16 16 O -0.61 -34.32 13.91 -3.05 -0.04 -34.36 16 17 N -0.57 -30.14 5.29 -306.99 -1.62 -31.77 16 18 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 20 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 21 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 22 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 C -0.12 -1.54 9.76 30.62 0.30 -1.24 16 27 C -0.12 -1.47 8.40 30.62 0.26 -1.22 16 28 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.41 4.87 8.83 -92.71 -0.82 4.05 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.08 1.18 5.87 -2.39 -0.01 1.17 16 35 H 0.10 1.91 6.48 -2.39 -0.02 1.89 16 36 H 0.07 1.99 7.52 -2.39 -0.02 1.97 16 37 H 0.06 1.84 7.93 -2.39 -0.02 1.83 16 38 H 0.05 1.14 8.12 -2.38 -0.02 1.12 16 39 H 0.08 2.13 6.47 -2.39 -0.02 2.12 16 40 H 0.06 2.26 5.82 -2.39 -0.01 2.24 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 3.40 7.93 -2.39 -0.02 3.38 16 43 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 44 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 45 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.11 1.61 8.01 -2.38 -0.02 1.59 16 47 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.12 1.37 8.00 -2.38 -0.02 1.35 16 49 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -76.59 407.26 -0.69 -77.29 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.57 Total: 36.29 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: 8.70 Total: 35.23 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -10.71 Total: -130.96 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.14 Total: -63.39 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -76.59 -0.69 -77.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732594403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.029 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds