Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47416 * 2 1 4 4 C 1.53003 * 109.47165 * 299.99758 * 3 2 1 5 5 C 1.52997 * 109.47504 * 300.00478 * 4 3 2 6 6 C 1.52995 * 109.47723 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47472 * 174.99648 * 6 5 4 8 8 C 1.47959 * 110.99798 * 269.35637 * 7 6 5 9 9 C 1.53940 * 86.17705 * 222.41915 * 8 7 6 10 10 C 1.47960 * 110.99908 * 169.99515 * 7 6 5 11 11 H 1.09003 * 113.85649 * 23.25635 * 10 7 6 12 12 C 1.52996 * 113.76162 * 251.90151 * 10 7 6 13 13 N 1.46498 * 109.47059 * 58.93300 * 12 10 7 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00053 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47356 * 89.99148 * 22 20 18 24 24 H 1.48497 * 109.47342 * 209.99750 * 22 20 18 25 25 H 1.48505 * 109.46847 * 329.99403 * 22 20 18 26 26 C 1.53002 * 109.47345 * 59.99264 * 5 4 3 27 27 C 1.53001 * 109.47129 * 300.00546 * 26 5 4 28 28 H 1.09003 * 109.46578 * 60.00087 * 1 2 3 29 29 H 1.08992 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47166 * 300.00542 * 1 2 3 31 31 H 1.08995 * 109.47175 * 120.00152 * 2 1 3 32 32 H 1.09002 * 109.47225 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47395 * 59.99598 * 3 2 1 34 34 H 1.08997 * 109.47702 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.47163 * 60.00050 * 4 3 2 36 36 H 1.09007 * 109.46561 * 299.99941 * 5 4 3 37 37 H 1.09002 * 109.47226 * 54.99367 * 6 5 4 38 38 H 1.09008 * 109.46590 * 294.99870 * 6 5 4 39 39 H 1.09002 * 113.75752 * 108.09787 * 8 7 6 40 40 H 1.08995 * 113.76061 * 336.73481 * 8 7 6 41 41 H 1.09002 * 113.72875 * 269.35924 * 9 8 7 42 42 H 1.08999 * 113.82957 * 138.09623 * 9 8 7 43 43 H 1.09004 * 109.47066 * 298.93568 * 12 10 7 44 44 H 1.08994 * 109.46974 * 178.93715 * 12 10 7 45 45 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 46 46 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 47 47 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 48 48 H 0.97000 * 120.00636 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.46839 * 60.00724 * 26 5 4 50 50 H 1.08999 * 109.46739 * 180.02562 * 26 5 4 51 51 H 1.09001 * 109.47164 * 300.00037 * 27 26 5 52 52 H 1.09000 * 109.46998 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 2.0400 1.4425 -2.4985 6 6 1.5307 2.1640 -3.7478 7 7 2.1164 1.5447 -4.9442 8 6 3.3873 2.2054 -5.3150 9 6 2.8887 2.1185 -6.7689 10 6 1.4703 2.0525 -6.1745 11 1 0.9987 3.0279 -6.0544 12 6 0.5614 1.0306 -6.8604 13 7 -0.4919 0.6131 -5.9317 14 6 -1.4184 -0.2841 -6.3230 15 8 -1.3772 -0.7496 -7.4422 16 6 -2.5057 -0.7090 -5.3699 17 16 -3.5844 -1.9136 -6.1832 18 6 -4.7284 -2.2283 -4.8806 19 1 -4.6203 -1.7219 -3.9329 20 6 -5.7691 -3.1264 -5.0730 21 7 -6.6240 -3.3612 -4.1001 22 14 -5.9564 -4.0018 -6.7125 23 1 -5.1929 -5.2751 -6.6839 24 1 -7.3921 -4.2909 -6.9581 25 1 -5.4332 -3.1351 -7.7989 26 6 1.5300 -0.0001 -2.4985 27 6 2.0400 -0.7213 -1.2492 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 0.8899 34 1 1.8931 3.1915 -1.2491 35 1 0.4401 2.1638 -1.2493 36 1 3.1301 1.4424 -2.4985 37 1 1.8194 3.2142 -3.7040 38 1 0.4443 2.0876 -3.7939 39 1 4.2714 1.5994 -5.1169 40 1 3.4771 3.2255 -4.9418 41 1 3.1919 1.2063 -7.2828 42 1 3.0779 3.0185 -7.3538 43 1 1.1498 0.1622 -7.1567 44 1 0.1093 1.4817 -7.7436 45 1 -0.5251 0.9856 -5.0367 46 1 -2.0571 -1.1621 -4.4858 47 1 -3.0907 0.1620 -5.0745 48 1 -7.3511 -3.9890 -4.2343 49 1 0.4401 0.0000 -2.4985 50 1 1.8937 -0.5140 -3.3883 51 1 3.1300 -0.7213 -1.2492 52 1 1.6763 -1.7488 -1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733204698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = -55.428022 kcal Electronic energy + Delta-G solvation = -28297.251658 eV Core-core repulsion = 24614.638731 eV Total energy + Delta-G solvation = -3682.612927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.44620 -40.37217 -39.68697 -35.62607 -34.67572 -34.34792 -31.66993 -31.58061 -30.28337 -28.69833 -27.82636 -27.59275 -24.76115 -24.22843 -23.43385 -21.92651 -21.51265 -20.57653 -19.83711 -19.45628 -17.93980 -17.45969 -17.15768 -17.05231 -16.67087 -16.49561 -15.98397 -15.76258 -15.44718 -15.31966 -15.07596 -14.91479 -14.71827 -14.59497 -14.23455 -13.78918 -13.65562 -13.42644 -13.35070 -13.12945 -13.02207 -12.91382 -12.89009 -12.69646 -12.58826 -12.18477 -12.15888 -11.96043 -11.88839 -11.80909 -11.66979 -11.53355 -11.17477 -11.03208 -10.95360 -10.84091 -10.73582 -10.54684 -10.10484 -9.66363 -9.00112 -8.51872 -6.22693 0.98070 1.31191 1.46453 1.55220 1.57477 2.20238 2.25709 2.69710 2.86424 2.92207 3.56353 3.72072 3.78178 3.83675 3.88026 3.93516 4.11581 4.13205 4.19264 4.24600 4.33035 4.39647 4.43079 4.49646 4.51850 4.55491 4.60055 4.66867 4.69123 4.76762 4.81897 4.85620 4.91202 4.91714 5.01174 5.02205 5.05970 5.18177 5.23303 5.25774 5.27645 5.33696 5.36621 5.45179 5.50182 5.56124 5.61178 5.70357 5.71919 6.10803 6.16902 6.44608 6.93275 7.18671 8.60669 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.003192 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.570271 B = 8770.068549 C =11128.348743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.108 4.108 4 C -0.115 4.115 5 C -0.065 4.065 6 C 0.024 3.976 7 N -0.485 5.485 8 C 0.008 3.992 9 C -0.128 4.128 10 C 0.021 3.979 11 H 0.099 0.901 12 C 0.142 3.858 13 N -0.705 5.705 14 C 0.534 3.466 15 O -0.563 6.563 16 C -0.110 4.110 17 S -0.172 6.172 18 C -0.529 4.529 19 H 0.061 0.939 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.236 1.236 26 C -0.104 4.104 27 C -0.115 4.115 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.408 0.592 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.277 0.723 49 H 0.048 0.952 50 H 0.056 0.944 51 H 0.063 0.937 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.593 17.138 4.469 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.146 4.146 4 C -0.153 4.153 5 C -0.084 4.084 6 C -0.104 4.104 7 N -0.208 5.208 8 C -0.120 4.120 9 C -0.166 4.166 10 C -0.089 4.089 11 H 0.117 0.883 12 C 0.018 3.982 13 N -0.358 5.358 14 C 0.319 3.681 15 O -0.442 6.442 16 C -0.261 4.261 17 S 0.055 5.945 18 C -0.677 4.677 19 H 0.079 0.921 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.182 1.182 25 H -0.160 1.160 26 C -0.142 4.142 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.245 0.755 46 H 0.125 0.875 47 H 0.129 0.871 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.082 0.918 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 24.501 15.603 2.860 29.188 hybrid contribution -0.888 0.663 1.509 1.872 sum 23.613 16.266 4.369 29.004 Atomic orbital electron populations 1.21948 0.95914 1.01144 1.01966 1.21088 0.95360 0.96683 0.97768 1.21501 1.00570 0.94554 0.97941 1.21602 1.00903 0.98962 0.93837 1.20929 1.00101 0.94288 0.93069 1.22799 0.99262 0.97014 0.91371 1.68513 1.03891 1.47930 1.00505 1.23934 0.94298 0.98974 0.94843 1.23308 0.92438 1.03891 0.96981 1.23709 0.95747 0.96768 0.92694 0.88337 1.21344 0.87508 0.97403 0.91943 1.45679 1.28332 1.43750 1.18046 1.19926 0.82175 0.78830 0.87169 1.90681 1.75211 1.55973 1.22306 1.23247 0.98307 1.02857 1.01717 1.84676 1.31877 1.55355 1.22596 1.22457 1.14630 1.30494 1.00120 0.92097 1.25548 0.93937 0.96003 1.00350 1.70012 1.15969 1.35546 1.33969 0.85881 0.79157 0.80574 0.80857 1.18722 1.18211 1.16018 1.21436 0.99822 0.95741 0.97167 1.21557 1.00407 0.98420 0.94826 0.92282 0.94066 0.92461 0.91447 0.91646 0.91613 0.91141 0.92124 0.91314 0.92272 0.91825 0.89318 0.89738 0.89432 0.88869 0.92363 0.91351 0.75522 0.87506 0.87098 0.91348 0.93283 0.92559 0.91827 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.50 71.98 0.61 -2.27 16 2 C -0.09 -1.48 3.19 -10.79 -0.03 -1.52 16 3 C -0.11 -1.43 5.45 30.59 0.17 -1.26 16 4 C -0.12 -1.47 4.93 30.59 0.15 -1.31 16 5 C -0.07 -0.91 2.38 -10.80 -0.03 -0.93 16 6 C 0.02 0.31 4.03 86.30 0.35 0.66 16 7 N -0.49 -6.91 5.30 -883.84 -4.68 -11.59 16 8 C 0.01 0.08 7.96 86.41 0.69 0.77 16 9 C -0.13 -1.33 7.84 31.24 0.25 -1.09 16 10 C 0.02 0.28 3.38 45.02 0.15 0.43 16 11 H 0.10 1.11 7.93 -2.39 -0.02 1.09 16 12 C 0.14 3.03 5.80 86.38 0.50 3.53 16 13 N -0.70 -17.91 5.50 -463.07 -2.55 -20.46 16 14 C 0.53 19.17 7.85 87.66 0.69 19.85 16 15 O -0.56 -24.76 15.86 -3.04 -0.05 -24.81 16 16 C -0.11 -4.33 6.16 71.24 0.44 -3.89 16 17 S -0.17 -8.86 18.55 -56.49 -1.05 -9.91 16 18 C -0.53 -31.31 10.04 67.96 0.68 -30.63 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.05 2.79 5.50 84.86 0.47 3.26 16 21 N -0.92 -56.37 13.97 21.65 0.30 -56.07 16 22 Si 0.91 45.52 27.74 68.60 1.90 47.42 16 23 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 26 C -0.10 -1.94 4.82 30.60 0.15 -1.80 16 27 C -0.11 -2.08 5.45 30.60 0.17 -1.91 16 28 H 0.06 1.15 4.81 -2.39 -0.01 1.14 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.87 6.43 -2.38 -0.02 0.86 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.06 0.60 7.38 -2.39 -0.02 0.58 16 38 H 0.06 0.90 6.40 -2.38 -0.02 0.88 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.61 7.48 -2.39 -0.02 0.59 16 41 H 0.09 1.08 7.94 -2.39 -0.02 1.06 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 1.44 7.91 -2.38 -0.02 1.43 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.41 8.57 6.54 -92.71 -0.61 7.96 16 46 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 47 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 48 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 49 H 0.05 1.03 6.43 -2.39 -0.02 1.02 16 50 H 0.06 1.24 7.75 -2.39 -0.02 1.23 16 51 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -71.87 408.47 -0.48 -72.36 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.24 Total: 21.17 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.39 Total: -18.12 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -6.93 Total: -88.11 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -71.87 -0.48 -72.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733204698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.929 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds