Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.53007 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47203 * 180.02562 * 4 3 2 6 6 C 1.46834 * 111.00158 * 45.85949 * 5 4 3 7 7 C 1.53039 * 109.63882 * 186.21614 * 6 5 4 8 8 C 1.53221 * 109.19530 * 300.37839 * 7 6 5 9 9 C 1.52531 * 109.18885 * 56.80761 * 8 7 6 10 10 C 1.53826 * 110.16742 * 65.74403 * 9 8 7 11 11 C 1.54504 * 104.79881 * 118.62721 * 10 9 8 12 12 N 1.48182 * 104.63445 * 23.79939 * 11 10 9 13 13 C 1.34772 * 127.80206 * 140.72106 * 12 11 10 14 14 O 1.21280 * 119.99974 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00266 * 0.03157 * 13 12 11 16 16 S 1.81001 * 109.47211 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00149 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00351 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00082 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99623 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46723 * 90.00678 * 21 19 17 23 23 H 1.48500 * 109.47161 * 209.99968 * 21 19 17 24 24 H 1.48500 * 109.47342 * 330.00779 * 21 19 17 25 25 C 1.48258 * 104.38930 * 320.70757 * 12 11 10 26 26 C 1.46944 * 110.99870 * 169.99932 * 5 4 3 27 27 H 1.09001 * 109.46707 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47276 * 300.00016 * 1 2 3 29 29 H 1.09004 * 109.47149 * 60.00605 * 1 2 3 30 30 H 1.08997 * 109.47276 * 239.99984 * 2 1 3 31 31 H 1.09004 * 109.47149 * 119.99394 * 2 1 3 32 32 H 1.08997 * 109.47703 * 60.00245 * 3 2 1 33 33 H 1.09003 * 109.47274 * 299.99354 * 3 2 1 34 34 H 1.08997 * 109.47147 * 59.99924 * 4 3 2 35 35 H 1.09003 * 109.46611 * 299.99778 * 4 3 2 36 36 H 1.09001 * 109.44560 * 306.27144 * 6 5 4 37 37 H 1.08998 * 109.44550 * 66.20022 * 6 5 4 38 38 H 1.08997 * 109.52041 * 60.29436 * 7 6 5 39 39 H 1.09005 * 109.51837 * 180.40790 * 7 6 5 40 40 H 1.09000 * 109.51894 * 176.72610 * 8 7 6 41 41 H 1.08997 * 109.51573 * 296.83505 * 8 7 6 42 42 H 1.08998 * 110.37512 * 237.45334 * 10 9 8 43 43 H 1.08995 * 110.37581 * 359.68357 * 10 9 8 44 44 H 1.09001 * 110.40672 * 142.59578 * 11 10 9 45 45 H 1.09007 * 110.40475 * 264.89574 * 11 10 9 46 46 H 1.09006 * 109.47098 * 299.99294 * 15 13 12 47 47 H 1.08995 * 109.47561 * 59.99755 * 15 13 12 48 48 H 0.97006 * 119.99644 * 179.97438 * 20 19 17 49 49 H 1.09006 * 110.42028 * 280.38504 * 25 12 11 50 50 H 1.08995 * 110.42307 * 157.91743 * 25 12 11 51 51 H 1.09002 * 109.45113 * 295.16255 * 26 5 4 52 52 H 1.08997 * 109.45500 * 55.11363 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8276 0.0013 6 6 3.3345 3.6417 0.9849 7 6 3.7582 5.1063 0.8529 8 6 5.2668 5.2182 1.0963 9 6 6.0017 4.3112 0.1145 10 6 5.8043 4.8172 -1.3247 11 6 7.2276 5.1521 -1.8239 12 7 8.1236 4.3215 -0.9854 13 6 9.2370 3.6644 -1.3662 14 8 9.8683 3.0205 -0.5552 15 6 9.6976 3.7299 -2.7996 16 16 11.2091 2.7532 -2.9928 17 6 11.5144 2.9984 -4.7107 18 1 10.8432 3.6086 -5.2967 19 6 12.6170 2.4064 -5.3111 20 7 12.8453 2.5901 -6.5944 21 14 13.7776 1.3503 -4.2976 22 1 13.3157 -0.0608 -4.3269 23 1 15.1471 1.4347 -4.8656 24 1 13.7925 1.8372 -2.8948 25 6 7.5186 4.3769 0.3670 26 6 5.5088 2.8737 0.2401 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9337 0.9286 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 2.2625 3.5565 0.8069 37 1 3.5646 3.2871 1.9896 38 1 3.5235 5.4644 -0.1494 39 1 3.2242 5.7076 1.5888 40 1 5.5843 6.2501 0.9464 41 1 5.4947 4.9118 2.1171 42 1 5.3589 4.0380 -1.9432 43 1 5.1785 5.7095 -1.3307 44 1 7.3345 4.8843 -2.8751 45 1 7.4419 6.2110 -1.6787 46 1 8.9199 3.3289 -3.4497 47 1 9.8983 4.7665 -3.0698 48 1 13.6161 2.1767 -7.0139 49 1 7.7816 5.3111 0.8633 50 1 7.8422 3.5241 0.9636 51 1 5.7234 2.5026 1.2423 52 1 6.0178 2.2500 -0.4946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733288416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -45.784449 kcal Electronic energy + Delta-G solvation = -27940.744784 eV Core-core repulsion = 24258.550034 eV Total energy + Delta-G solvation = -3682.194750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75460 -38.91569 -37.21466 -35.35602 -33.29723 -32.42441 -31.74257 -29.73311 -29.54837 -28.82208 -25.94240 -25.53051 -24.92090 -23.26446 -22.82208 -21.99178 -20.59057 -19.46005 -18.64864 -17.56374 -16.69661 -16.43584 -16.04925 -15.88826 -15.31138 -15.04962 -14.87677 -14.82659 -14.58498 -13.97050 -13.93043 -13.74216 -13.57371 -13.40821 -13.20805 -13.02745 -12.80104 -12.70173 -12.53080 -12.17224 -11.89980 -11.83121 -11.72918 -11.44861 -11.32438 -11.26297 -11.24796 -11.21453 -10.99661 -10.92152 -10.70907 -10.63295 -10.42778 -10.40520 -9.84211 -9.47759 -8.99015 -8.60848 -8.55815 -8.47716 -6.90266 -6.27475 -3.98988 2.71266 2.98165 3.22734 3.34357 3.51863 3.52049 3.62381 4.29972 4.34023 4.34874 4.42425 4.51602 4.56679 4.68545 4.75896 4.79918 4.84999 4.93520 4.99384 5.10603 5.11672 5.15844 5.17792 5.21470 5.23724 5.29960 5.35123 5.41971 5.44626 5.50881 5.52688 5.57139 5.59418 5.61192 5.67454 5.69428 5.72803 5.76355 5.78857 5.82876 5.90412 5.96000 5.98706 6.04324 6.08549 6.15255 6.38673 6.80769 6.83193 7.68687 7.95662 8.43265 8.47843 9.18751 10.81715 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.002367 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.174086 B =11825.619483 C =12936.246471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.122 4.122 4 C 0.054 3.946 5 N -0.534 5.534 6 C 0.048 3.952 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.067 4.067 10 C -0.113 4.113 11 C 0.097 3.903 12 N -0.627 5.627 13 C 0.553 3.447 14 O -0.521 6.521 15 C -0.117 4.117 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.116 3.884 26 C 0.072 3.928 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.033 0.967 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.794 3.912 16.118 30.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.073 4.073 5 N -0.258 5.258 6 C -0.079 4.079 7 C -0.154 4.154 8 C -0.145 4.145 9 C -0.068 4.068 10 C -0.151 4.151 11 C -0.026 4.026 12 N -0.364 5.364 13 C 0.341 3.659 14 O -0.396 6.396 15 C -0.267 4.267 16 S 0.083 5.917 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.008 4.008 26 C -0.056 4.056 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.099 0.901 51 H 0.052 0.948 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.704 3.051 16.650 29.948 hybrid contribution 0.032 -0.055 -0.042 0.076 sum -24.673 2.997 16.609 29.893 Atomic orbital electron populations 1.21757 0.95745 1.01616 1.01769 1.21502 0.95954 0.96701 1.02168 1.21777 0.94628 0.96935 1.02603 1.22155 0.95146 0.88976 1.01043 1.61983 1.03732 1.10480 1.49634 1.22209 0.98914 0.93618 0.93191 1.21626 0.95574 0.95656 1.02562 1.21556 0.95107 0.99324 0.98476 1.21118 0.94174 0.95144 0.96359 1.22505 0.95663 1.01996 0.94967 1.22484 0.89043 0.94929 0.96191 1.48972 1.25929 1.50839 1.10630 1.19934 0.78304 0.77545 0.90077 1.90701 1.53976 1.40893 1.54019 1.23241 1.03299 1.05445 0.94719 1.84777 1.27010 1.65569 1.14319 1.22308 1.15418 1.37487 0.91533 0.89384 1.24713 0.96679 0.95351 0.94592 1.69942 1.28678 1.43196 1.09881 0.86736 0.80625 0.81747 0.82749 1.19221 1.19948 1.15929 1.22245 0.90611 1.02355 0.85594 1.22030 0.87664 0.95973 0.99922 0.92774 0.92901 0.92640 0.91764 0.92188 0.91772 0.91004 0.90499 0.95007 0.90177 0.95251 0.90748 0.91583 0.91245 0.92018 0.89824 0.90416 0.89983 0.91268 0.88603 0.88585 0.91961 0.91118 0.90111 0.94847 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.81 4.47 -26.73 -0.12 -0.93 16 4 C 0.05 0.44 5.28 -3.82 -0.02 0.42 16 5 N -0.53 -4.62 4.42 -234.95 -1.04 -5.66 16 6 C 0.05 0.35 4.85 -3.84 -0.02 0.33 16 7 C -0.12 -0.75 5.88 -26.60 -0.16 -0.91 16 8 C -0.11 -0.76 4.47 -26.86 -0.12 -0.88 16 9 C -0.07 -0.60 0.68 -154.10 -0.10 -0.71 16 10 C -0.11 -1.01 5.59 -25.51 -0.14 -1.15 16 11 C 0.10 1.03 6.92 -2.33 -0.02 1.02 16 12 N -0.63 -8.87 3.32 -169.40 -0.56 -9.43 16 13 C 0.55 10.43 7.93 -10.99 -0.09 10.34 16 14 O -0.52 -11.75 16.13 5.56 0.09 -11.66 16 15 C -0.12 -2.35 5.14 36.01 0.18 -2.17 16 16 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 17 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 18 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 21 Si 0.86 22.01 27.74 -169.99 -4.71 17.30 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 25 C 0.12 1.34 6.13 -2.59 -0.02 1.32 16 26 C 0.07 0.71 3.80 -4.06 -0.02 0.70 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.40 6.20 -51.93 -0.32 0.08 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.08 0.52 5.78 -51.93 -0.30 0.22 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.84 7.56 -51.93 -0.39 0.45 16 43 H 0.08 0.58 6.74 -51.93 -0.35 0.23 16 44 H 0.08 0.89 7.31 -51.93 -0.38 0.51 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 1.82 7.95 -51.91 -0.41 1.41 16 47 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 50 H 0.08 1.06 7.59 -51.93 -0.39 0.66 16 51 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 LS Contribution 408.02 15.07 6.15 6.15 Total: -1.00 -33.18 408.02 -11.16 -44.34 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -9.65 Total: -3.25 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.21 Total: -6.13 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.83 Total: -41.05 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.18 -11.16 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733288416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.444 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds