Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50706 * 119.99993 * 2 1 4 4 C 1.50706 * 120.00317 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46735 * 95.00070 * 4 2 1 6 6 N 1.46901 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.46846 * 110.99738 * 66.05101 * 6 5 4 8 8 C 1.53041 * 109.52003 * 174.15981 * 7 6 5 9 9 C 1.53120 * 109.28215 * 59.17728 * 8 7 6 10 10 C 1.53120 * 109.15835 * 302.34563 * 9 8 7 11 11 C 1.52997 * 109.50326 * 297.67117 * 10 9 8 12 12 C 1.52999 * 109.49940 * 177.59503 * 10 9 8 13 13 N 1.46489 * 109.47271 * 60.00169 * 12 10 9 14 14 C 1.34781 * 119.99871 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99956 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99886 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.46872 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99714 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00304 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99830 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99946 * 179.97438 * 20 18 17 22 22 Si 1.86810 * 120.00103 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46738 * 90.00613 * 22 20 18 24 24 H 1.48502 * 109.46932 * 210.00198 * 22 20 18 25 25 H 1.48496 * 109.46931 * 330.00412 * 22 20 18 26 26 C 1.46839 * 111.00234 * 301.83737 * 6 5 4 27 27 H 1.08012 * 119.99983 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46408 * 269.99542 * 3 2 1 30 30 H 1.08998 * 109.46910 * 29.99429 * 3 2 1 31 31 H 1.08995 * 109.47016 * 149.99875 * 3 2 1 32 32 H 1.09001 * 109.46797 * 335.00418 * 4 2 1 33 33 H 1.08992 * 109.47518 * 215.00415 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00410 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00591 * 5 4 2 36 36 H 1.09002 * 109.46476 * 294.17097 * 7 6 5 37 37 H 1.08994 * 109.46671 * 54.14251 * 7 6 5 38 38 H 1.09001 * 109.50321 * 179.12207 * 8 7 6 39 39 H 1.08999 * 109.50410 * 299.19360 * 8 7 6 40 40 H 1.08994 * 109.51809 * 62.24931 * 9 8 7 41 41 H 1.08995 * 109.52117 * 182.44169 * 9 8 7 42 42 H 1.09008 * 109.47137 * 60.00374 * 11 10 9 43 43 H 1.08997 * 109.47103 * 180.02562 * 11 10 9 44 44 H 1.08996 * 109.47490 * 300.00411 * 11 10 9 45 45 H 1.09003 * 109.46526 * 180.02562 * 12 10 9 46 46 H 1.09006 * 109.47222 * 299.99410 * 12 10 9 47 47 H 0.96998 * 120.00293 * 359.97438 * 13 12 10 48 48 H 1.08992 * 109.47077 * 299.99723 * 16 14 13 49 49 H 1.08999 * 109.47078 * 59.99723 * 16 14 13 50 50 H 0.97001 * 119.99541 * 179.97438 * 21 20 18 51 51 H 1.08998 * 109.46586 * 305.85726 * 26 6 5 52 52 H 1.09001 * 109.46136 * 65.82255 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 7 3.1614 -2.9569 -1.4358 7 6 2.3011 -4.0605 -0.9903 8 6 3.0510 -5.3861 -1.1406 9 6 4.3308 -5.3411 -0.3012 10 6 5.1864 -4.1542 -0.7528 11 6 5.5955 -4.3463 -2.2145 12 6 6.4393 -4.0661 0.1209 13 7 7.2133 -5.3030 -0.0091 14 6 8.3654 -5.4520 0.6744 15 8 8.7615 -4.5618 1.3966 16 6 9.1614 -6.7247 0.5411 17 16 10.6444 -6.6197 1.5734 18 6 11.3649 -8.1916 1.2346 19 1 10.8748 -8.8757 0.5578 20 6 12.5618 -8.5510 1.8385 21 7 13.0998 -9.7255 1.5858 22 14 13.4092 -7.3680 3.0099 23 1 12.9258 -7.6098 4.3930 24 1 14.8775 -7.5829 2.9541 25 1 13.0978 -5.9711 2.6138 26 6 4.3747 -2.8643 -0.6138 27 1 -0.5401 -0.9354 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2451 1.6197 -1.0278 30 1 1.4743 2.0648 0.5137 31 1 3.0158 1.1748 0.5138 32 1 1.4386 -2.0853 0.4352 33 1 2.9741 -1.1986 0.5900 34 1 1.5167 -1.7909 -2.0257 35 1 3.0524 -0.9043 -1.8709 36 1 2.0321 -3.9120 0.0555 37 1 1.3966 -4.0840 -1.5980 38 1 2.4179 -6.2035 -0.7953 39 1 3.3076 -5.5424 -2.1883 40 1 4.0722 -5.2242 0.7512 41 1 4.8898 -6.2665 -0.4394 42 1 4.7025 -4.4076 -2.8367 43 1 6.2049 -3.5014 -2.5353 44 1 6.1707 -5.2668 -2.3129 45 1 7.0477 -3.2208 -0.2007 46 1 6.1473 -3.9278 1.1620 47 1 6.8967 -6.0148 -0.5870 48 1 8.5527 -7.5694 0.8637 49 1 9.4528 -6.8636 -0.5000 50 1 13.9365 -9.9765 2.0076 51 1 4.9762 -2.0190 -0.9479 52 1 4.0959 -2.7213 0.4302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733457221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -56.856737 kcal Electronic energy + Delta-G solvation = -27416.422883 eV Core-core repulsion = 23733.748003 eV Total energy + Delta-G solvation = -3682.674881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33994 -40.26522 -37.93153 -36.23115 -34.67165 -34.28900 -32.89229 -30.93180 -29.67817 -28.10294 -28.00139 -27.86021 -26.69790 -25.81949 -23.35520 -22.12313 -21.55346 -19.96533 -19.73390 -18.89646 -17.98911 -17.39659 -17.08012 -16.72930 -16.45901 -16.23047 -15.98381 -15.73662 -15.66961 -15.18680 -15.04749 -14.88871 -14.85283 -14.57124 -14.34657 -14.02905 -13.83758 -13.64586 -13.36510 -13.32328 -13.10919 -13.05404 -12.98591 -12.71322 -12.64377 -12.51275 -12.34869 -12.13120 -11.88104 -11.85816 -11.52976 -11.47160 -11.27890 -11.16968 -11.14756 -10.98506 -10.53437 -10.12780 -10.11204 -9.08227 -8.99331 -8.51340 -6.22105 0.99202 1.31419 1.32035 1.47016 1.56177 1.57564 2.22001 2.26562 2.71787 2.86898 2.97486 3.64672 3.68641 3.83171 3.88057 3.91166 3.96317 4.19341 4.22829 4.25462 4.27378 4.31062 4.38836 4.47050 4.49234 4.60159 4.64757 4.67501 4.72858 4.75795 4.81189 4.81877 4.85707 4.95555 5.00642 5.06222 5.08256 5.11481 5.14917 5.19134 5.23153 5.27794 5.39218 5.42828 5.61232 5.70983 5.72281 5.95719 6.11681 6.13490 6.17663 6.46276 6.93911 7.19388 8.60975 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023329 B = 0.001899 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.924533 B =14741.301298 C =15512.507613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.121 4.121 4 C -0.120 4.120 5 C 0.068 3.932 6 N -0.531 5.531 7 C 0.052 3.948 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.056 4.056 11 C -0.131 4.131 12 C 0.133 3.867 13 N -0.707 5.707 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.111 4.111 17 S -0.176 6.176 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.069 3.931 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.414 0.586 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.277 0.723 51 H 0.077 0.923 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.224 17.332 -8.637 35.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.129 4.129 3 C -0.178 4.178 4 C -0.159 4.159 5 C -0.060 4.060 6 N -0.254 5.254 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.151 4.151 10 C -0.057 4.057 11 C -0.188 4.188 12 C 0.009 3.991 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.262 4.262 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.059 4.059 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.252 0.748 48 H 0.131 0.869 49 H 0.132 0.868 50 H 0.086 0.914 51 H 0.095 0.905 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -28.302 18.562 -7.934 34.764 hybrid contribution -0.081 -1.247 0.404 1.313 sum -28.383 17.316 -7.531 34.090 Atomic orbital electron populations 1.23793 0.95249 1.02270 1.02640 1.21784 0.95585 0.95830 0.99710 1.20898 1.00052 0.94267 1.02597 1.21351 1.00073 0.95002 0.99468 1.22164 0.98602 0.90748 0.94517 1.62129 1.06165 1.04239 1.52837 1.22157 0.95929 0.90875 0.98578 1.21606 0.95869 0.96568 1.01095 1.21673 0.96520 0.97454 0.99438 1.20698 0.92705 0.96193 0.96127 1.21776 1.01789 1.01149 0.94096 1.21360 0.91899 0.86165 0.99678 1.45735 1.22274 1.20389 1.47699 1.19945 0.81290 0.87502 0.79248 1.90687 1.70046 1.43584 1.39965 1.23270 0.98592 0.99383 1.04993 1.84713 1.24535 1.23663 1.62023 1.22466 1.11206 1.01285 1.32723 0.91927 1.25559 0.96586 0.96520 0.97283 1.70020 1.20082 1.21335 1.43998 0.85870 0.79127 0.81378 0.80014 1.18714 1.18314 1.16112 1.21972 0.91586 0.96800 0.95567 0.88415 0.87898 0.90785 0.91504 0.92072 0.91582 0.91596 0.90174 0.90452 0.94983 0.90023 0.90604 0.90561 0.92555 0.91259 0.90409 0.93227 0.92912 0.92183 0.92558 0.74825 0.86883 0.86845 0.91381 0.90459 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 13.89 67.79 0.94 -1.22 16 2 C -0.13 -1.45 5.31 -16.48 -0.09 -1.54 16 3 C -0.12 -1.20 10.03 71.24 0.71 -0.48 16 4 C -0.12 -1.36 4.68 29.85 0.14 -1.22 16 5 C 0.07 0.73 5.34 86.30 0.46 1.19 16 6 N -0.53 -6.43 4.14 -896.37 -3.71 -10.14 16 7 C 0.05 0.58 5.05 86.33 0.44 1.01 16 8 C -0.11 -1.25 5.74 30.65 0.18 -1.07 16 9 C -0.11 -1.52 4.58 30.67 0.14 -1.38 16 10 C -0.06 -0.83 0.53 -52.13 -0.03 -0.85 16 11 C -0.13 -1.87 7.86 71.98 0.57 -1.30 16 12 C 0.13 2.78 4.57 86.38 0.39 3.17 16 13 N -0.71 -16.62 4.98 -463.06 -2.31 -18.93 16 14 C 0.53 18.34 7.85 87.66 0.69 19.03 16 15 O -0.56 -24.22 15.86 -3.03 -0.05 -24.27 16 16 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 17 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 18 C -0.53 -30.88 10.04 67.95 0.68 -30.20 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 20 C 0.05 2.70 5.50 84.86 0.47 3.17 16 21 N -0.92 -55.86 13.97 21.65 0.30 -55.55 16 22 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 26 C 0.07 0.95 3.55 86.33 0.31 1.26 16 27 H 0.10 0.97 7.99 -2.90 -0.02 0.94 16 28 H 0.10 0.94 8.04 -2.91 -0.02 0.92 16 29 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.07 0.60 8.06 -2.39 -0.02 0.58 16 31 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.07 0.79 6.53 -2.39 -0.02 0.77 16 33 H 0.07 0.85 6.46 -2.39 -0.02 0.84 16 34 H 0.08 0.82 8.06 -2.39 -0.02 0.80 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.03 0.38 6.75 -2.39 -0.02 0.37 16 37 H 0.08 0.78 8.06 -2.39 -0.02 0.77 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.85 6.59 -2.39 -0.02 0.84 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.91 6.94 -2.39 -0.02 0.90 16 42 H 0.08 1.07 6.02 -2.38 -0.01 1.05 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 0.73 6.87 -2.39 -0.02 0.72 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 47 H 0.41 7.41 6.19 -92.71 -0.57 6.84 16 48 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 49 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 50 H 0.28 15.60 8.31 -92.71 -0.77 14.82 16 51 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 52 H 0.04 0.54 6.61 -2.39 -0.02 0.53 16 Total: -1.00 -70.73 411.84 1.80 -68.92 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.27 Total: 17.07 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 6.44 Total: -14.19 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -5.72 Total: -84.62 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -70.73 1.80 -68.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733457221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.068 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds