Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47255 * 2 1 4 4 C 1.31002 * 119.99981 * 126.33180 * 3 2 1 5 5 C 1.50700 * 120.00032 * 7.54164 * 4 3 2 6 6 C 1.53005 * 109.46707 * 127.61743 * 5 4 3 7 7 N 1.46903 * 109.46801 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99963 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47145 * 34.99671 * 8 7 6 10 10 C 1.53010 * 109.46849 * 274.99894 * 8 7 6 11 11 C 1.52998 * 109.47088 * 155.00087 * 8 7 6 12 12 H 1.08996 * 110.91474 * 62.44652 * 11 8 7 13 13 C 1.55156 * 111.00183 * 186.34835 * 11 8 7 14 14 C 1.54332 * 103.02087 * 153.37905 * 13 11 8 15 15 N 1.47021 * 107.26415 * 338.14225 * 14 13 11 16 16 C 1.34782 * 125.64778 * 178.85465 * 15 14 13 17 17 O 1.21275 * 119.99938 * 179.69151 * 16 15 14 18 18 C 1.50699 * 119.99886 * 359.68247 * 16 15 14 19 19 S 1.80998 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00141 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99830 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99846 * 0.27308 * 22 20 19 24 24 Si 1.86792 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47465 * 59.99795 * 24 22 20 26 26 H 1.48498 * 109.47339 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.46925 * 299.99588 * 24 22 20 28 28 C 1.47419 * 108.70369 * 358.58035 * 15 14 13 29 29 H 1.09000 * 109.47103 * 60.00130 * 1 2 3 30 30 H 1.09002 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47240 * 299.99708 * 1 2 3 32 32 H 1.09005 * 109.47024 * 239.99797 * 2 1 3 33 33 H 1.09000 * 109.47103 * 119.99869 * 2 1 3 34 34 H 1.08000 * 120.00011 * 306.33670 * 3 2 1 35 35 H 1.08003 * 119.99542 * 187.54055 * 4 3 2 36 36 H 1.08997 * 109.47208 * 7.62028 * 5 4 3 37 37 H 1.08997 * 109.46900 * 247.61377 * 5 4 3 38 38 H 1.08997 * 109.47054 * 60.00191 * 6 5 4 39 39 H 1.08997 * 109.47141 * 299.99486 * 6 5 4 40 40 H 1.00901 * 110.99768 * 303.95318 * 7 6 5 41 41 H 1.08996 * 109.46872 * 179.97438 * 10 8 7 42 42 H 1.09002 * 109.46996 * 300.00379 * 10 8 7 43 43 H 1.08997 * 109.46713 * 60.00137 * 10 8 7 44 44 H 1.09002 * 110.71960 * 271.93665 * 13 11 8 45 45 H 1.09008 * 110.72155 * 35.03115 * 13 11 8 46 46 H 1.09001 * 109.99161 * 218.66220 * 14 13 11 47 47 H 1.08999 * 109.78054 * 97.49588 * 14 13 11 48 48 H 1.09003 * 109.47123 * 60.00361 * 18 16 15 49 49 H 1.09002 * 109.47195 * 300.00739 * 18 16 15 50 50 H 0.97000 * 120.00341 * 359.72951 * 23 22 20 51 51 H 1.09004 * 110.36344 * 143.19532 * 28 15 14 52 52 H 1.08996 * 110.37129 * 265.40804 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8844 1.8143 0.9140 5 6 3.4925 0.8105 1.8593 6 6 5.0162 0.9479 1.8381 7 7 5.6089 -0.0310 2.7592 8 6 7.0743 0.0723 2.7656 9 1 7.3655 1.1152 2.6407 10 6 7.6491 -0.7588 1.6166 11 6 7.6168 -0.4531 4.0962 12 1 7.3754 -1.5081 4.2254 13 6 9.1460 -0.2148 4.2062 14 6 9.3766 -0.1346 5.7301 15 7 8.0893 0.2147 6.3485 16 6 7.8660 0.3588 7.6698 17 8 6.7600 0.6557 8.0690 18 6 8.9906 0.1508 8.6511 19 16 8.3791 0.4135 10.3343 20 6 9.8567 0.1156 11.2467 21 1 10.7688 -0.1410 10.7286 22 6 9.8483 0.2107 12.6315 23 7 8.7353 0.5181 13.2633 24 14 11.4150 -0.1044 13.5987 25 1 12.4593 0.8643 13.1789 26 1 11.1427 0.0598 15.0492 27 1 11.8886 -1.4874 13.3370 28 6 7.0848 0.3878 5.2835 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6899 2.1147 -0.7534 35 1 3.1511 2.8581 0.9899 36 1 3.2141 -0.1964 1.5484 37 1 3.1252 0.9936 2.8691 38 1 5.2945 1.9548 2.1491 39 1 5.3835 0.7648 0.8283 40 1 5.2351 0.0761 3.6903 41 1 8.7363 -0.6818 1.6211 42 1 7.3577 -1.8018 1.7414 43 1 7.2626 -0.3845 0.6687 44 1 9.6984 -1.0489 3.7736 45 1 9.4259 0.7223 3.7249 46 1 10.1166 0.6335 5.9551 47 1 9.7169 -1.1006 6.1030 48 1 9.7921 0.8591 8.4407 49 1 9.3710 -0.8664 8.5576 50 1 7.9218 0.6821 12.7610 51 1 6.1159 0.0109 5.6111 52 1 7.0072 1.4379 5.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733526867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -39.736898 kcal Electronic energy + Delta-G solvation = -26543.008011 eV Core-core repulsion = 22861.075502 eV Total energy + Delta-G solvation = -3681.932509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15424 -38.39862 -37.36768 -36.00963 -33.28127 -32.53358 -31.52056 -30.21674 -29.75063 -28.25545 -27.64880 -24.88137 -23.83218 -23.53560 -23.06182 -21.89071 -20.37319 -19.39195 -18.65057 -18.24409 -17.03868 -16.82335 -16.25866 -15.73040 -15.30130 -15.19974 -14.86616 -14.52904 -14.30991 -14.15066 -14.09612 -13.83137 -13.78382 -13.58581 -12.89656 -12.84842 -12.65858 -12.50240 -12.48154 -12.37740 -12.21011 -12.10708 -11.91722 -11.86335 -11.79537 -11.56755 -11.37759 -11.11635 -11.02906 -10.92331 -10.81169 -10.68847 -10.17792 -9.58942 -9.53257 -9.31209 -9.01982 -8.79249 -8.59927 -8.23143 -6.68284 -6.62710 -4.00780 1.83542 2.77862 2.94355 3.32415 3.37482 3.45066 3.57655 3.67990 4.17743 4.24123 4.26900 4.40063 4.49424 4.68055 4.75563 4.75743 4.87879 4.90039 4.94188 4.96977 4.98395 5.07997 5.14812 5.21912 5.22335 5.25826 5.27905 5.34936 5.37768 5.45049 5.48425 5.51893 5.55283 5.61188 5.61996 5.66437 5.68737 5.72573 5.78756 5.82877 5.84899 5.89656 6.00271 6.01745 6.31529 6.32620 6.48924 6.69777 7.02212 7.56621 7.91052 8.43588 8.49393 9.26548 10.81145 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.001723 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.993892 B =16246.090568 C =17400.525121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.101 4.101 6 C 0.066 3.934 7 N -0.689 5.689 8 C 0.097 3.903 9 H 0.047 0.953 10 C -0.139 4.139 11 C -0.104 4.104 12 H 0.095 0.905 13 C -0.122 4.122 14 C 0.101 3.899 15 N -0.624 5.624 16 C 0.547 3.453 17 O -0.517 6.517 18 C -0.124 4.124 19 S -0.117 6.117 20 C -0.608 4.608 21 H 0.065 0.935 22 C 0.036 3.964 23 N -0.883 5.883 24 Si 1.084 2.916 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.285 1.285 28 C 0.109 3.891 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.344 0.656 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.278 0.722 51 H 0.078 0.922 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 -1.224 -30.914 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.176 4.176 4 C -0.176 4.176 5 C -0.138 4.138 6 C -0.064 4.064 7 N -0.321 5.321 8 C -0.013 4.013 9 H 0.065 0.935 10 C -0.197 4.197 11 C -0.123 4.123 12 H 0.113 0.887 13 C -0.161 4.161 14 C -0.023 4.023 15 N -0.361 5.361 16 C 0.335 3.665 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.110 5.890 20 C -0.756 4.756 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.517 5.517 24 Si 0.910 3.090 25 H -0.211 1.211 26 H -0.203 1.203 27 H -0.211 1.211 28 C -0.014 4.014 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.163 0.837 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.944 -1.332 -29.130 29.976 hybrid contribution 1.037 0.660 -1.632 2.043 sum -5.907 -0.672 -30.762 31.331 Atomic orbital electron populations 1.21697 0.95160 1.01685 1.01873 1.20836 0.96065 0.94687 1.02906 1.22818 0.98618 0.97600 0.98558 1.22740 0.98515 0.99176 0.97203 1.20846 0.94314 0.99428 0.99249 1.21909 0.93920 0.93055 0.97468 1.60545 1.04908 1.52966 1.13711 1.21453 0.87473 0.98129 0.94214 0.93505 1.21789 0.99855 1.00748 0.97270 1.22582 0.95383 1.01142 0.93230 0.88671 1.22673 0.95529 1.02973 0.94895 1.22027 0.86362 1.01070 0.92812 1.48435 1.11056 1.71561 1.05088 1.20009 0.89818 0.76039 0.80604 1.90706 1.24837 1.46244 1.77305 1.23287 0.99455 1.04969 0.99778 1.84818 1.18367 1.92096 0.93747 1.23694 0.95987 1.59557 0.96328 0.91627 1.26060 1.03931 0.93432 0.94072 1.70797 1.00921 1.40805 1.39224 0.83328 0.73053 0.76539 0.76065 1.21146 1.20254 1.21119 1.22190 0.93362 0.99128 0.86716 0.92831 0.92538 0.92637 0.91396 0.90304 0.87485 0.87447 0.89573 0.91214 0.95211 0.90937 0.83671 0.92334 0.91824 0.92815 0.89651 0.90491 0.91208 0.91132 0.89076 0.89017 0.90992 0.90326 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.11 -0.66 6.04 -27.88 -0.17 -0.83 16 3 C -0.16 -1.03 9.51 -36.03 -0.34 -1.38 16 4 C -0.16 -1.08 9.51 -36.03 -0.34 -1.43 16 5 C -0.10 -0.72 5.56 -27.88 -0.16 -0.87 16 6 C 0.07 0.47 5.47 -3.82 -0.02 0.45 16 7 N -0.69 -5.44 6.31 -106.72 -0.67 -6.11 16 8 C 0.10 0.72 2.16 -67.71 -0.15 0.57 16 9 H 0.05 0.36 7.77 -51.93 -0.40 -0.04 16 10 C -0.14 -0.91 9.26 37.16 0.34 -0.57 16 11 C -0.10 -0.88 2.70 -88.47 -0.24 -1.11 16 12 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 13 C -0.12 -0.92 5.59 -24.89 -0.14 -1.06 16 14 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 15 N -0.62 -9.02 3.33 -170.52 -0.57 -9.59 16 16 C 0.55 10.70 7.87 -10.98 -0.09 10.62 16 17 O -0.52 -12.08 16.12 5.56 0.09 -11.99 16 18 C -0.12 -2.59 5.35 36.01 0.19 -2.40 16 19 S -0.12 -3.19 19.60 -107.50 -2.11 -5.30 16 20 C -0.61 -17.66 9.50 30.94 0.29 -17.37 16 21 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 22 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 23 N -0.88 -27.65 13.67 55.49 0.76 -26.89 16 24 Si 1.08 25.00 29.92 -169.99 -5.09 19.91 16 25 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.11 1.28 5.44 -2.53 -0.01 1.26 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.51 5.28 -51.93 -0.27 0.24 16 34 H 0.11 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.11 0.69 8.06 -52.48 -0.42 0.26 16 36 H 0.09 0.63 5.30 -51.93 -0.28 0.35 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.22 8.05 -51.93 -0.42 -0.20 16 39 H 0.07 0.53 7.43 -51.93 -0.39 0.14 16 40 H 0.34 2.89 6.97 -39.29 -0.27 2.62 16 41 H 0.06 0.33 7.50 -51.93 -0.39 -0.06 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.35 7.45 -51.93 -0.39 -0.03 16 44 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 45 H 0.08 0.52 8.01 -51.92 -0.42 0.11 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 49 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 50 H 0.28 8.89 7.12 -40.82 -0.29 8.60 16 51 H 0.08 1.01 7.52 -51.93 -0.39 0.62 16 52 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 LS Contribution 424.16 15.07 6.39 6.39 Total: -1.00 -34.46 424.16 -11.21 -45.67 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -9.45 Total: 0.48 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.57 Total: -12.57 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.48 Total: -42.59 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.09 Total: 19.91 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.11 Total: -5.30 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.46 -11.21 -45.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.937 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds