Wall clock time and date at job start Sat Apr 11 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47255 * 2 1 4 4 C 1.31002 * 119.99981 * 126.33180 * 3 2 1 5 5 C 1.50700 * 120.00032 * 7.54164 * 4 3 2 6 6 C 1.53005 * 109.46707 * 127.61743 * 5 4 3 7 7 N 1.46903 * 109.46801 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99963 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47145 * 34.99671 * 8 7 6 10 10 C 1.53010 * 109.46849 * 274.99894 * 8 7 6 11 11 C 1.52998 * 109.47088 * 155.00087 * 8 7 6 12 12 H 1.08996 * 110.91474 * 62.44652 * 11 8 7 13 13 C 1.55156 * 111.00183 * 186.34835 * 11 8 7 14 14 C 1.54332 * 103.02087 * 153.37905 * 13 11 8 15 15 N 1.47021 * 107.26415 * 338.14225 * 14 13 11 16 16 C 1.34782 * 125.64778 * 178.85465 * 15 14 13 17 17 O 1.21275 * 119.99938 * 179.69151 * 16 15 14 18 18 C 1.50699 * 119.99886 * 359.68247 * 16 15 14 19 19 S 1.80998 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00141 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00187 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99830 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99846 * 0.27308 * 22 20 19 24 24 Si 1.86792 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47465 * 59.99795 * 24 22 20 26 26 H 1.48498 * 109.47339 * 179.97438 * 24 22 20 27 27 H 1.48510 * 109.46925 * 299.99588 * 24 22 20 28 28 C 1.47419 * 108.70369 * 358.58035 * 15 14 13 29 29 H 1.09000 * 109.47103 * 60.00130 * 1 2 3 30 30 H 1.09002 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47240 * 299.99708 * 1 2 3 32 32 H 1.09005 * 109.47024 * 239.99797 * 2 1 3 33 33 H 1.09000 * 109.47103 * 119.99869 * 2 1 3 34 34 H 1.08000 * 120.00011 * 306.33670 * 3 2 1 35 35 H 1.08003 * 119.99542 * 187.54055 * 4 3 2 36 36 H 1.08997 * 109.47208 * 7.62028 * 5 4 3 37 37 H 1.08997 * 109.46900 * 247.61377 * 5 4 3 38 38 H 1.08997 * 109.47054 * 60.00191 * 6 5 4 39 39 H 1.08997 * 109.47141 * 299.99486 * 6 5 4 40 40 H 1.00901 * 110.99768 * 303.95318 * 7 6 5 41 41 H 1.08996 * 109.46872 * 179.97438 * 10 8 7 42 42 H 1.09002 * 109.46996 * 300.00379 * 10 8 7 43 43 H 1.08997 * 109.46713 * 60.00137 * 10 8 7 44 44 H 1.09002 * 110.71960 * 271.93665 * 13 11 8 45 45 H 1.09008 * 110.72155 * 35.03115 * 13 11 8 46 46 H 1.09001 * 109.99161 * 218.66220 * 14 13 11 47 47 H 1.08999 * 109.78054 * 97.49588 * 14 13 11 48 48 H 1.09003 * 109.47123 * 60.00361 * 18 16 15 49 49 H 1.09002 * 109.47195 * 300.00739 * 18 16 15 50 50 H 0.97000 * 120.00341 * 359.72951 * 23 22 20 51 51 H 1.09004 * 110.36344 * 143.19532 * 28 15 14 52 52 H 1.08996 * 110.37129 * 265.40804 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8844 1.8143 0.9140 5 6 3.4925 0.8105 1.8593 6 6 5.0162 0.9479 1.8381 7 7 5.6089 -0.0310 2.7592 8 6 7.0743 0.0723 2.7656 9 1 7.3655 1.1152 2.6407 10 6 7.6491 -0.7588 1.6166 11 6 7.6168 -0.4531 4.0962 12 1 7.3754 -1.5081 4.2254 13 6 9.1460 -0.2148 4.2062 14 6 9.3766 -0.1346 5.7301 15 7 8.0893 0.2147 6.3485 16 6 7.8660 0.3588 7.6698 17 8 6.7600 0.6557 8.0690 18 6 8.9906 0.1508 8.6511 19 16 8.3791 0.4135 10.3343 20 6 9.8567 0.1156 11.2467 21 1 10.7688 -0.1410 10.7286 22 6 9.8483 0.2107 12.6315 23 7 8.7353 0.5181 13.2633 24 14 11.4150 -0.1044 13.5987 25 1 12.4593 0.8643 13.1789 26 1 11.1427 0.0598 15.0492 27 1 11.8886 -1.4874 13.3370 28 6 7.0848 0.3878 5.2835 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6899 2.1147 -0.7534 35 1 3.1511 2.8581 0.9899 36 1 3.2141 -0.1964 1.5484 37 1 3.1252 0.9936 2.8691 38 1 5.2945 1.9548 2.1491 39 1 5.3835 0.7648 0.8283 40 1 5.2351 0.0761 3.6903 41 1 8.7363 -0.6818 1.6211 42 1 7.3577 -1.8018 1.7414 43 1 7.2626 -0.3845 0.6687 44 1 9.6984 -1.0489 3.7736 45 1 9.4259 0.7223 3.7249 46 1 10.1166 0.6335 5.9551 47 1 9.7169 -1.1006 6.1030 48 1 9.7921 0.8591 8.4407 49 1 9.3710 -0.8664 8.5576 50 1 7.9218 0.6821 12.7610 51 1 6.1159 0.0109 5.6111 52 1 7.0072 1.4379 5.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733526867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:14 Heat of formation + Delta-G solvation = -60.706263 kcal Electronic energy + Delta-G solvation = -26543.917311 eV Core-core repulsion = 22861.075502 eV Total energy + Delta-G solvation = -3682.841809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28323 -39.43439 -38.11616 -36.79478 -34.76570 -34.04268 -32.36786 -31.31357 -30.55315 -29.32484 -28.25847 -27.09877 -24.67858 -24.22746 -23.72917 -22.54912 -21.06821 -20.89268 -20.10366 -19.18199 -18.26565 -17.81050 -17.15329 -16.96390 -16.50154 -15.99279 -15.77491 -15.67415 -15.57697 -15.47833 -14.98797 -14.69475 -14.62629 -14.47071 -14.41557 -14.05429 -13.86130 -13.72254 -13.41007 -13.33487 -12.99891 -12.98262 -12.81736 -12.74238 -12.67980 -12.41098 -12.17611 -11.95758 -11.89418 -11.80616 -11.72321 -11.57789 -11.43868 -11.21265 -11.11203 -11.10790 -10.35705 -9.84070 -9.81190 -9.40557 -8.94321 -8.90912 -6.30323 1.11442 1.30870 1.41279 1.51091 1.60430 1.80635 1.95913 2.32847 3.00990 3.01517 3.10216 3.40197 3.50236 3.68686 3.81645 3.91514 4.05433 4.15032 4.17675 4.21015 4.21105 4.26963 4.30925 4.35122 4.39038 4.44702 4.49998 4.58281 4.64712 4.68934 4.75782 4.76302 4.82543 4.88129 4.95063 4.99849 5.03405 5.08144 5.13359 5.19903 5.23820 5.25725 5.32549 5.35891 5.46784 5.62068 5.79379 5.96490 6.10908 6.12596 6.26468 6.36084 6.96549 7.04720 8.49030 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.001723 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.993892 B =16246.090568 C =17400.525121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.158 4.158 4 C -0.167 4.167 5 C -0.097 4.097 6 C 0.071 3.929 7 N -0.696 5.696 8 C 0.101 3.899 9 H 0.050 0.950 10 C -0.134 4.134 11 C -0.090 4.090 12 H 0.092 0.908 13 C -0.110 4.110 14 C 0.087 3.913 15 N -0.615 5.615 16 C 0.543 3.457 17 O -0.568 6.568 18 C -0.099 4.099 19 S -0.196 6.196 20 C -0.614 4.614 21 H 0.076 0.924 22 C -0.018 4.018 23 N -0.912 5.912 24 Si 1.137 2.863 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.262 1.262 28 C 0.105 3.895 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.339 0.661 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.108 0.892 50 H 0.260 0.740 51 H 0.061 0.939 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 -1.899 -33.448 33.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.176 4.176 4 C -0.186 4.186 5 C -0.134 4.134 6 C -0.058 4.058 7 N -0.327 5.327 8 C -0.009 4.009 9 H 0.068 0.932 10 C -0.192 4.192 11 C -0.109 4.109 12 H 0.110 0.890 13 C -0.148 4.148 14 C -0.034 4.034 15 N -0.349 5.349 16 C 0.331 3.669 17 O -0.447 6.447 18 C -0.251 4.251 19 S 0.031 5.969 20 C -0.762 4.762 21 H 0.094 0.906 22 C -0.221 4.221 23 N -0.547 5.547 24 Si 0.955 3.045 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.187 1.187 28 C -0.018 4.018 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.514 -2.018 -31.756 32.138 hybrid contribution 0.244 0.865 -1.021 1.360 sum -4.270 -1.153 -32.776 33.073 Atomic orbital electron populations 1.21693 0.94779 1.02038 1.01844 1.20854 0.96405 0.94490 1.02890 1.22977 0.98176 0.97966 0.98490 1.22786 0.99032 0.99322 0.97457 1.20791 0.94357 0.99440 0.98849 1.21868 0.93871 0.92737 0.97368 1.60604 1.05412 1.53260 1.13472 1.21463 0.87090 0.98444 0.93868 0.93234 1.21762 1.00799 1.00037 0.96623 1.22488 0.96146 1.00166 0.92104 0.88984 1.22705 0.94591 1.04968 0.92537 1.22424 0.84488 1.01724 0.94812 1.48413 1.13513 1.69150 1.03838 1.19749 0.88601 0.76309 0.82212 1.90684 1.26353 1.49077 1.78584 1.23146 1.00092 1.06321 0.95495 1.85070 1.20003 1.92532 0.99302 1.24026 0.96331 1.58912 0.96913 0.90617 1.27873 1.06318 0.92160 0.95778 1.70919 1.01278 1.43235 1.39285 0.82714 0.69391 0.78088 0.74347 1.18714 1.20500 1.18708 1.22389 0.92299 1.00075 0.87025 0.92226 0.92034 0.93283 0.90848 0.90859 0.86637 0.87102 0.89787 0.92085 0.95442 0.90621 0.84275 0.90708 0.92398 0.92758 0.86943 0.88979 0.90294 0.90318 0.87379 0.87349 0.92930 0.92011 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.11 -1.26 6.04 29.85 0.18 -1.08 16 3 C -0.16 -1.94 9.51 25.64 0.24 -1.70 16 4 C -0.17 -2.21 9.51 25.64 0.24 -1.97 16 5 C -0.10 -1.35 5.56 29.85 0.17 -1.19 16 6 C 0.07 0.96 5.47 86.30 0.47 1.43 16 7 N -0.70 -10.27 6.31 -491.55 -3.10 -13.37 16 8 C 0.10 1.27 2.16 44.92 0.10 1.36 16 9 H 0.05 0.62 7.77 -2.39 -0.02 0.61 16 10 C -0.13 -1.36 9.26 71.99 0.67 -0.70 16 11 C -0.09 -1.30 2.70 -9.40 -0.03 -1.32 16 12 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 13 C -0.11 -1.23 5.59 31.79 0.18 -1.05 16 14 C 0.09 1.59 6.49 86.73 0.56 2.15 16 15 N -0.61 -17.06 3.33 -811.80 -2.70 -19.76 16 16 C 0.54 21.36 7.87 87.66 0.69 22.05 16 17 O -0.57 -27.57 16.12 -3.01 -0.05 -27.62 16 18 C -0.10 -4.11 5.35 71.24 0.38 -3.73 16 19 S -0.20 -11.03 19.60 -56.49 -1.11 -12.14 16 20 C -0.61 -35.80 9.50 67.96 0.65 -35.15 16 21 H 0.08 4.12 7.80 -2.91 -0.02 4.09 16 22 C -0.02 -1.06 5.49 84.86 0.47 -0.60 16 23 N -0.91 -58.44 13.67 21.65 0.30 -58.14 16 24 Si 1.14 49.30 29.92 68.60 2.05 51.36 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 28 C 0.10 2.36 5.44 86.86 0.47 2.83 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.92 5.28 -2.39 -0.01 0.91 16 34 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.11 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.08 1.20 5.30 -2.39 -0.01 1.19 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.03 0.39 8.05 -2.39 -0.02 0.37 16 39 H 0.08 0.99 7.43 -2.39 -0.02 0.97 16 40 H 0.34 5.63 6.97 -89.69 -0.62 5.00 16 41 H 0.07 0.53 7.50 -2.39 -0.02 0.51 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.05 0.57 7.45 -2.39 -0.02 0.55 16 44 H 0.11 0.76 8.13 -2.39 -0.02 0.74 16 45 H 0.09 0.83 8.01 -2.38 -0.02 0.81 16 46 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 49 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 50 H 0.26 17.36 7.12 -92.71 -0.66 16.70 16 51 H 0.06 1.62 7.52 -2.38 -0.02 1.60 16 52 H 0.06 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -77.57 424.16 1.90 -75.67 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.36 Total: 23.49 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 6.15 Total: -19.47 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -5.51 Total: -91.27 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.36 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.11 Total: -12.14 kcal Total: -77.57 1.90 -75.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.959 kcal (2) G-P(sol) polarization free energy of solvation -77.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds