Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46750 * 2 1 4 4 C 1.31006 * 120.00127 * 126.95000 * 3 2 1 5 5 C 1.50706 * 119.99571 * 7.14900 * 4 3 2 6 6 C 1.52998 * 109.46940 * 126.94877 * 5 4 3 7 7 N 1.46902 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.46897 * 110.99798 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47519 * 35.00120 * 8 7 6 10 10 C 1.52994 * 109.47157 * 275.00048 * 8 7 6 11 11 C 1.53004 * 109.47060 * 154.99664 * 8 7 6 12 12 H 1.09001 * 110.91179 * 58.46742 * 11 8 7 13 13 C 1.55438 * 111.11870 * 294.46979 * 11 8 7 14 14 C 1.54327 * 102.97014 * 206.46229 * 13 11 8 15 15 N 1.47025 * 107.26902 * 22.19262 * 14 13 11 16 16 C 1.34777 * 125.64703 * 181.08194 * 15 14 13 17 17 O 1.21281 * 119.99762 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00161 * 359.97438 * 16 15 14 19 19 S 1.81000 * 109.47417 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00255 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99976 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99982 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99835 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99967 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47020 * 89.99821 * 24 22 20 26 26 H 1.48500 * 109.47180 * 209.99461 * 24 22 20 27 27 H 1.48500 * 109.47342 * 330.00030 * 24 22 20 28 28 C 1.47425 * 108.70343 * 1.05903 * 15 14 13 29 29 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47159 * 300.00333 * 1 2 3 31 31 H 1.09001 * 109.47086 * 59.99910 * 1 2 3 32 32 H 1.08998 * 109.47334 * 240.00165 * 2 1 3 33 33 H 1.09001 * 109.46853 * 119.99591 * 2 1 3 34 34 H 1.07998 * 120.00343 * 306.93771 * 3 2 1 35 35 H 1.08000 * 120.00237 * 187.15208 * 4 3 2 36 36 H 1.08998 * 109.47270 * 6.95322 * 5 4 3 37 37 H 1.08997 * 109.46606 * 246.94775 * 5 4 3 38 38 H 1.09004 * 109.46936 * 59.99723 * 6 5 4 39 39 H 1.08995 * 109.47476 * 300.00193 * 6 5 4 40 40 H 1.00903 * 110.99553 * 303.95143 * 7 6 5 41 41 H 1.08995 * 109.47514 * 62.18825 * 10 8 7 42 42 H 1.09007 * 109.47290 * 182.18981 * 10 8 7 43 43 H 1.09002 * 109.47096 * 302.18364 * 10 8 7 44 44 H 1.08996 * 110.71030 * 88.09270 * 13 11 8 45 45 H 1.08997 * 110.71198 * 324.83260 * 13 11 8 46 46 H 1.09002 * 109.88386 * 262.77928 * 14 13 11 47 47 H 1.08999 * 109.88586 * 141.60710 * 14 13 11 48 48 H 1.09005 * 109.46909 * 299.99922 * 18 16 15 49 49 H 1.09000 * 109.47279 * 59.99999 * 18 16 15 50 50 H 0.96998 * 119.99982 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.36692 * 94.70934 * 28 15 14 52 52 H 1.09001 * 110.36856 * 216.92801 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8936 1.8112 0.9067 5 6 3.5046 0.8052 1.8480 6 6 5.0292 0.9241 1.8018 7 7 5.6248 -0.0560 2.7198 8 6 7.0912 0.0297 2.7024 9 1 7.3929 1.0682 2.5662 10 6 7.6377 -0.8154 1.5501 11 6 7.6484 -0.4936 4.0278 12 1 7.3377 -1.5239 4.2008 13 6 7.2288 0.4216 5.2120 14 6 8.3549 0.1931 6.2423 15 7 9.5273 -0.3006 5.5051 16 6 10.7124 -0.6393 6.0502 17 8 11.6138 -1.0368 5.3427 18 6 10.9177 -0.5240 7.5386 19 16 12.5982 -1.0490 7.9585 20 6 12.5636 -0.8183 9.7049 21 1 11.6680 -0.4500 10.1833 22 6 13.6876 -1.1087 10.4657 23 7 14.7792 -1.5570 9.8826 24 14 13.6511 -0.8634 12.3172 25 1 13.1897 -2.1132 12.9731 26 1 15.0147 -0.5260 12.7988 27 1 12.7199 0.2439 12.6516 28 6 9.1915 -0.3644 4.0710 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6824 2.1173 -0.7475 35 1 3.1658 2.8538 0.9796 36 1 3.2093 -0.1999 1.5472 37 1 3.1556 0.9983 2.8623 38 1 5.3245 1.9294 2.1026 39 1 5.3782 0.7312 0.7875 40 1 5.2671 0.0616 3.6560 41 1 7.2718 -0.4187 0.6031 42 1 8.7273 -0.7831 1.5608 43 1 7.3037 -1.8465 1.6655 44 1 6.2662 0.1101 5.6176 45 1 7.1974 1.4655 4.9002 46 1 8.0402 -0.5478 6.9773 47 1 8.5983 1.1319 6.7398 48 1 10.7727 0.5117 7.8462 49 1 10.1990 -1.1604 8.0549 50 1 15.5645 -1.7604 10.4143 51 1 9.5101 0.5475 3.5659 52 1 9.6581 -1.2352 3.6105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733526869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -34.372504 kcal Electronic energy + Delta-G solvation = -26334.893458 eV Core-core repulsion = 22653.193566 eV Total energy + Delta-G solvation = -3681.699891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05870 -38.36914 -37.36225 -35.98166 -33.24925 -32.42750 -31.42332 -30.53269 -29.55069 -27.94282 -27.61922 -25.49733 -24.16952 -23.61481 -22.66643 -21.96644 -20.33574 -19.31030 -18.69549 -17.72082 -17.02633 -16.60758 -16.29972 -15.69495 -15.30844 -14.93261 -14.86195 -14.79806 -14.41216 -14.28855 -14.02898 -13.90754 -13.80130 -13.30586 -13.01132 -12.82577 -12.59265 -12.56024 -12.51602 -12.41879 -12.35764 -12.03926 -11.84829 -11.75156 -11.48808 -11.42162 -11.08053 -11.06413 -11.02242 -10.95562 -10.81258 -10.74024 -10.72575 -9.81328 -9.41209 -9.37311 -9.06342 -8.81214 -8.49772 -8.22971 -6.49933 -6.21312 -3.91961 1.77627 2.91057 3.06969 3.22423 3.26078 3.30445 3.60661 3.70231 4.19479 4.22354 4.27940 4.35548 4.54127 4.62459 4.69793 4.73954 4.84306 4.91827 4.94603 5.00201 5.01099 5.13854 5.15324 5.16993 5.21133 5.23227 5.27558 5.34306 5.46742 5.47171 5.50280 5.53901 5.61981 5.64041 5.65630 5.68678 5.71697 5.75098 5.78123 5.81192 5.94539 5.97638 6.07996 6.14440 6.26033 6.42517 6.43154 6.68552 7.01088 7.59676 7.67991 8.35476 8.56453 9.23882 10.86184 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.001525 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.723938 B =18356.229565 C =18959.371955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.156 4.156 4 C -0.160 4.160 5 C -0.100 4.100 6 C 0.065 3.935 7 N -0.686 5.686 8 C 0.098 3.902 9 H 0.047 0.953 10 C -0.143 4.143 11 C -0.104 4.104 12 H 0.095 0.905 13 C -0.131 4.131 14 C 0.104 3.896 15 N -0.627 5.627 16 C 0.548 3.452 17 O -0.516 6.516 18 C -0.147 4.147 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.116 3.884 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.341 0.659 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.268 0.732 51 H 0.064 0.936 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.878 6.293 -18.153 33.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.175 4.175 4 C -0.178 4.178 5 C -0.137 4.137 6 C -0.064 4.064 7 N -0.318 5.318 8 C -0.012 4.012 9 H 0.065 0.935 10 C -0.201 4.201 11 C -0.123 4.123 12 H 0.113 0.887 13 C -0.169 4.169 14 C -0.020 4.020 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.390 6.390 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.007 4.007 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.160 0.840 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.269 5.104 -19.588 33.163 hybrid contribution -0.992 1.664 2.514 3.174 sum -27.261 6.768 -17.073 32.871 Atomic orbital electron populations 1.21697 0.95181 1.01689 1.01840 1.20843 0.96039 0.94683 1.02972 1.22832 0.98524 0.97595 0.98507 1.22738 0.98477 0.99171 0.97428 1.20837 0.94372 0.99446 0.99024 1.21914 0.93736 0.93019 0.97743 1.60532 1.05397 1.52834 1.12988 1.21422 0.87179 0.98175 0.94416 0.93487 1.21841 1.00422 1.00706 0.97166 1.22618 0.95028 1.00905 0.93789 0.88683 1.22784 0.98380 1.00115 0.95626 1.21953 0.85370 0.99654 0.95001 1.48497 1.12727 1.67535 1.07678 1.20024 0.80092 0.76166 0.90039 1.90708 1.40528 1.44761 1.62972 1.23506 1.07690 1.05078 0.93429 1.85398 1.05092 1.85547 1.07376 1.22860 1.02038 1.51457 0.92003 0.90953 1.24986 0.94520 0.94551 0.99466 1.70017 1.02558 1.41575 1.36119 0.86170 0.77619 0.78635 0.83088 1.20254 1.20732 1.19708 1.22117 0.93493 1.02231 0.82871 0.92531 0.92706 0.92807 0.91298 0.90304 0.87467 0.87473 0.89573 0.91420 0.95275 0.90868 0.84012 0.92857 0.92039 0.91716 0.89892 0.90789 0.91179 0.91314 0.89357 0.89311 0.92176 0.91821 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.32 16 2 C -0.11 -0.57 6.04 -27.88 -0.17 -0.74 16 3 C -0.16 -0.88 9.51 -36.03 -0.34 -1.23 16 4 C -0.16 -0.91 9.51 -36.02 -0.34 -1.26 16 5 C -0.10 -0.56 5.58 -27.88 -0.16 -0.72 16 6 C 0.07 0.41 5.47 -3.82 -0.02 0.38 16 7 N -0.69 -4.62 6.31 -106.73 -0.67 -5.29 16 8 C 0.10 0.73 2.17 -67.72 -0.15 0.59 16 9 H 0.05 0.37 7.79 -51.93 -0.40 -0.04 16 10 C -0.14 -1.14 9.24 37.15 0.34 -0.79 16 11 C -0.10 -0.89 2.69 -88.32 -0.24 -1.12 16 12 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 13 C -0.13 -0.99 5.61 -24.74 -0.14 -1.12 16 14 C 0.10 1.11 6.49 -3.06 -0.02 1.09 16 15 N -0.63 -9.19 3.33 -170.52 -0.57 -9.76 16 16 C 0.55 10.83 7.87 -10.99 -0.09 10.74 16 17 O -0.52 -12.20 16.12 5.56 0.09 -12.11 16 18 C -0.15 -3.06 5.35 36.00 0.19 -2.87 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.12 1.40 5.36 -2.53 -0.01 1.38 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.43 5.27 -51.93 -0.27 0.15 16 34 H 0.11 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.09 0.52 5.27 -51.93 -0.27 0.25 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.03 0.18 8.05 -51.93 -0.42 -0.24 16 39 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 40 H 0.34 2.04 7.26 -39.29 -0.29 1.75 16 41 H 0.05 0.40 7.51 -51.93 -0.39 0.01 16 42 H 0.06 0.50 7.19 -51.93 -0.37 0.13 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.48 7.80 -51.93 -0.41 0.07 16 45 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 49 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 50 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 52 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 LS Contribution 425.55 15.07 6.41 6.41 Total: -1.00 -33.84 425.55 -11.31 -45.15 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -9.50 Total: -2.37 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.57 Total: -9.02 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: -0.51 Total: -40.61 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.84 -11.31 -45.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.779 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds