Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.46750 * 2 1 4 4 C 1.31006 * 120.00127 * 126.95000 * 3 2 1 5 5 C 1.50706 * 119.99571 * 7.14900 * 4 3 2 6 6 C 1.52998 * 109.46940 * 126.94877 * 5 4 3 7 7 N 1.46902 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.46897 * 110.99798 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47519 * 35.00120 * 8 7 6 10 10 C 1.52994 * 109.47157 * 275.00048 * 8 7 6 11 11 C 1.53004 * 109.47060 * 154.99664 * 8 7 6 12 12 H 1.09001 * 110.91179 * 58.46742 * 11 8 7 13 13 C 1.55438 * 111.11870 * 294.46979 * 11 8 7 14 14 C 1.54327 * 102.97014 * 206.46229 * 13 11 8 15 15 N 1.47025 * 107.26902 * 22.19262 * 14 13 11 16 16 C 1.34777 * 125.64703 * 181.08194 * 15 14 13 17 17 O 1.21281 * 119.99762 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00161 * 359.97438 * 16 15 14 19 19 S 1.81000 * 109.47417 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00255 * 179.97438 * 19 18 16 21 21 H 1.08002 * 119.99976 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99982 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99835 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99967 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47020 * 89.99821 * 24 22 20 26 26 H 1.48500 * 109.47180 * 209.99461 * 24 22 20 27 27 H 1.48500 * 109.47342 * 330.00030 * 24 22 20 28 28 C 1.47425 * 108.70343 * 1.05903 * 15 14 13 29 29 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47159 * 300.00333 * 1 2 3 31 31 H 1.09001 * 109.47086 * 59.99910 * 1 2 3 32 32 H 1.08998 * 109.47334 * 240.00165 * 2 1 3 33 33 H 1.09001 * 109.46853 * 119.99591 * 2 1 3 34 34 H 1.07998 * 120.00343 * 306.93771 * 3 2 1 35 35 H 1.08000 * 120.00237 * 187.15208 * 4 3 2 36 36 H 1.08998 * 109.47270 * 6.95322 * 5 4 3 37 37 H 1.08997 * 109.46606 * 246.94775 * 5 4 3 38 38 H 1.09004 * 109.46936 * 59.99723 * 6 5 4 39 39 H 1.08995 * 109.47476 * 300.00193 * 6 5 4 40 40 H 1.00903 * 110.99553 * 303.95143 * 7 6 5 41 41 H 1.08995 * 109.47514 * 62.18825 * 10 8 7 42 42 H 1.09007 * 109.47290 * 182.18981 * 10 8 7 43 43 H 1.09002 * 109.47096 * 302.18364 * 10 8 7 44 44 H 1.08996 * 110.71030 * 88.09270 * 13 11 8 45 45 H 1.08997 * 110.71198 * 324.83260 * 13 11 8 46 46 H 1.09002 * 109.88386 * 262.77928 * 14 13 11 47 47 H 1.08999 * 109.88586 * 141.60710 * 14 13 11 48 48 H 1.09005 * 109.46909 * 299.99922 * 18 16 15 49 49 H 1.09000 * 109.47279 * 59.99999 * 18 16 15 50 50 H 0.96998 * 119.99982 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.36692 * 94.70934 * 28 15 14 52 52 H 1.09001 * 110.36856 * 216.92801 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8936 1.8112 0.9067 5 6 3.5046 0.8052 1.8480 6 6 5.0292 0.9241 1.8018 7 7 5.6248 -0.0560 2.7198 8 6 7.0912 0.0297 2.7024 9 1 7.3929 1.0682 2.5662 10 6 7.6377 -0.8154 1.5501 11 6 7.6484 -0.4936 4.0278 12 1 7.3377 -1.5239 4.2008 13 6 7.2288 0.4216 5.2120 14 6 8.3549 0.1931 6.2423 15 7 9.5273 -0.3006 5.5051 16 6 10.7124 -0.6393 6.0502 17 8 11.6138 -1.0368 5.3427 18 6 10.9177 -0.5240 7.5386 19 16 12.5982 -1.0490 7.9585 20 6 12.5636 -0.8183 9.7049 21 1 11.6680 -0.4500 10.1833 22 6 13.6876 -1.1087 10.4657 23 7 14.7792 -1.5570 9.8826 24 14 13.6511 -0.8634 12.3172 25 1 13.1897 -2.1132 12.9731 26 1 15.0147 -0.5260 12.7988 27 1 12.7199 0.2439 12.6516 28 6 9.1915 -0.3644 4.0710 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6824 2.1173 -0.7475 35 1 3.1658 2.8538 0.9796 36 1 3.2093 -0.1999 1.5472 37 1 3.1556 0.9983 2.8623 38 1 5.3245 1.9294 2.1026 39 1 5.3782 0.7312 0.7875 40 1 5.2671 0.0616 3.6560 41 1 7.2718 -0.4187 0.6031 42 1 8.7273 -0.7831 1.5608 43 1 7.3037 -1.8465 1.6655 44 1 6.2662 0.1101 5.6176 45 1 7.1974 1.4655 4.9002 46 1 8.0402 -0.5478 6.9773 47 1 8.5983 1.1319 6.7398 48 1 10.7727 0.5117 7.8462 49 1 10.1990 -1.1604 8.0549 50 1 15.5645 -1.7604 10.4143 51 1 9.5101 0.5475 3.5659 52 1 9.6581 -1.2352 3.6105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733526869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -54.861738 kcal Electronic energy + Delta-G solvation = -26335.781938 eV Core-core repulsion = 22653.193566 eV Total energy + Delta-G solvation = -3682.588371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18638 -39.36888 -38.05354 -36.74722 -34.59848 -33.94381 -32.27775 -31.24237 -30.80902 -28.83357 -28.27631 -27.66506 -25.04514 -24.08451 -23.37495 -22.60688 -21.04828 -20.70501 -19.59126 -19.12561 -18.11118 -17.72299 -17.01797 -16.89282 -16.75999 -16.24921 -15.83005 -15.69593 -15.49774 -15.25217 -14.97120 -14.62243 -14.48402 -14.45029 -14.12456 -13.96510 -13.73728 -13.53783 -13.30161 -13.16128 -13.06471 -12.94866 -12.89486 -12.87531 -12.63423 -12.62262 -12.36108 -12.08770 -11.86020 -11.77680 -11.71126 -11.63511 -11.42618 -11.15993 -11.15057 -10.99979 -10.30124 -9.79356 -9.72336 -9.34221 -8.69768 -8.35538 -6.14701 1.22713 1.35667 1.42386 1.44369 1.53150 1.55769 2.07090 2.26404 2.98719 3.08046 3.23203 3.48960 3.52763 3.79162 3.90692 3.97555 4.16945 4.21427 4.22728 4.25789 4.27721 4.33409 4.38943 4.42196 4.43475 4.48197 4.53648 4.60042 4.67152 4.74672 4.79812 4.84867 4.86453 4.88111 4.94364 5.01230 5.07719 5.08862 5.18237 5.22309 5.27486 5.32575 5.33357 5.39534 5.40496 5.44515 5.84816 6.01148 6.12806 6.18729 6.36313 6.54492 7.05417 7.08313 8.73915 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.001525 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.723938 B =18356.229565 C =18959.371955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.163 4.163 4 C -0.165 4.165 5 C -0.094 4.094 6 C 0.069 3.931 7 N -0.687 5.687 8 C 0.106 3.894 9 H 0.050 0.950 10 C -0.143 4.143 11 C -0.089 4.089 12 H 0.092 0.908 13 C -0.117 4.117 14 C 0.091 3.909 15 N -0.618 5.618 16 C 0.544 3.456 17 O -0.568 6.568 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.257 1.257 28 C 0.110 3.890 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.349 0.651 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.272 0.728 51 H 0.069 0.931 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.918 7.561 -17.099 36.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.181 4.181 4 C -0.184 4.184 5 C -0.131 4.131 6 C -0.060 4.060 7 N -0.319 5.319 8 C -0.004 4.004 9 H 0.068 0.932 10 C -0.201 4.201 11 C -0.109 4.109 12 H 0.111 0.889 13 C -0.155 4.155 14 C -0.031 4.031 15 N -0.353 5.353 16 C 0.332 3.668 17 O -0.447 6.447 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.181 1.181 28 C -0.013 4.013 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.169 0.831 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.124 0.876 49 H 0.125 0.875 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -29.385 6.395 -18.546 35.332 hybrid contribution -0.161 1.291 2.059 2.435 sum -29.546 7.686 -16.487 34.697 Atomic orbital electron populations 1.21691 0.94778 1.01980 1.01868 1.20857 0.96414 0.94518 1.02866 1.22964 0.98598 0.97883 0.98635 1.22826 0.98557 0.99481 0.97510 1.20772 0.93872 0.99157 0.99321 1.21867 0.94010 0.92977 0.97139 1.60488 1.04634 1.53196 1.13621 1.21289 0.87762 0.98003 0.93327 0.93183 1.21831 0.99988 1.00531 0.97788 1.22484 0.92022 1.01314 0.95073 0.88949 1.22798 0.98238 1.00655 0.93817 1.22345 0.84677 1.00133 0.95977 1.48462 1.12086 1.65344 1.09383 1.19798 0.81191 0.76428 0.89336 1.90685 1.42738 1.47595 1.63681 1.23296 1.02911 1.06009 0.94795 1.85595 1.11652 1.86577 1.08630 1.23191 1.02737 1.51614 0.91918 0.89897 1.26139 0.93834 0.93779 1.05276 1.70184 1.03478 1.42719 1.38408 0.84938 0.78029 0.79184 0.75731 1.19232 1.20240 1.18125 1.22312 0.96133 1.01711 0.81100 0.92131 0.92900 0.92548 0.91372 0.90447 0.87029 0.87009 0.90052 0.90808 0.94871 0.91738 0.83130 0.92451 0.92793 0.92340 0.86992 0.89434 0.90320 0.90419 0.87598 0.87545 0.91944 0.91266 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 71.98 0.71 -0.48 16 2 C -0.11 -1.03 6.04 29.85 0.18 -0.85 16 3 C -0.16 -1.62 9.51 25.64 0.24 -1.38 16 4 C -0.17 -1.62 9.51 25.64 0.24 -1.37 16 5 C -0.09 -0.87 5.58 29.85 0.17 -0.70 16 6 C 0.07 0.71 5.47 86.30 0.47 1.18 16 7 N -0.69 -7.44 6.31 -491.58 -3.10 -10.54 16 8 C 0.11 1.36 2.17 44.92 0.10 1.46 16 9 H 0.05 0.65 7.79 -2.39 -0.02 0.63 16 10 C -0.14 -2.14 9.24 71.98 0.67 -1.48 16 11 C -0.09 -1.32 2.69 -9.30 -0.02 -1.35 16 12 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 13 C -0.12 -1.32 5.61 31.88 0.18 -1.14 16 14 C 0.09 1.67 6.49 86.73 0.56 2.23 16 15 N -0.62 -17.45 3.33 -811.78 -2.70 -20.15 16 16 C 0.54 21.67 7.87 87.65 0.69 22.36 16 17 O -0.57 -27.99 16.12 -3.03 -0.05 -28.04 16 18 C -0.12 -4.94 5.35 71.23 0.38 -4.56 16 19 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 20 C -0.55 -31.55 9.50 67.96 0.65 -30.91 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 24 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 C 0.11 2.56 5.36 86.86 0.47 3.03 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.74 5.27 -2.39 -0.01 0.73 16 34 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.08 0.85 5.27 -2.39 -0.01 0.84 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.03 0.33 8.05 -2.38 -0.02 0.31 16 39 H 0.06 0.79 7.48 -2.39 -0.02 0.77 16 40 H 0.35 2.91 7.26 -89.69 -0.65 2.26 16 41 H 0.06 0.80 7.51 -2.39 -0.02 0.79 16 42 H 0.05 0.88 7.19 -2.38 -0.02 0.86 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 0.72 7.80 -2.39 -0.02 0.70 16 45 H 0.09 0.83 8.03 -2.39 -0.02 0.81 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 49 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 50 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 52 H 0.06 1.66 7.88 -2.39 -0.02 1.65 16 Total: -1.00 -76.21 425.55 1.67 -74.54 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.22 Total: 17.10 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 6.15 Total: -12.66 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -5.52 Total: -86.83 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.05 Total: -28.04 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -76.21 1.67 -74.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733526869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.681 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds