Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00201 * 2 1 4 4 C 1.50704 * 119.99810 * 179.72457 * 2 1 3 5 5 N 1.46896 * 109.46699 * 95.66918 * 4 2 1 6 6 C 1.44308 * 110.99456 * 166.85674 * 5 4 2 7 7 C 1.53992 * 108.31260 * 221.35348 * 6 5 4 8 8 C 1.45874 * 112.66452 * 278.59415 * 7 6 5 9 9 H 1.08998 * 109.04203 * 300.93484 * 8 7 6 10 10 N 1.46498 * 108.98191 * 182.02013 * 8 7 6 11 11 C 1.34783 * 119.99941 * 82.87349 * 10 8 7 12 12 O 1.21281 * 119.99927 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99981 * 180.02562 * 11 10 8 14 14 S 1.81000 * 109.47045 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00156 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99851 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00240 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99672 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47118 * 90.00666 * 19 17 15 21 21 H 1.48505 * 109.46881 * 209.99819 * 19 17 15 22 22 H 1.48493 * 109.47542 * 329.99843 * 19 17 15 23 23 C 1.54519 * 111.67121 * 61.49502 * 8 7 6 24 24 C 1.50535 * 108.86829 * 282.76902 * 23 8 7 25 25 C 1.52999 * 108.78741 * 330.85615 * 24 23 8 26 26 C 1.52998 * 108.79099 * 212.63976 * 24 23 8 27 27 C 1.47943 * 111.00445 * 294.26690 * 5 4 2 28 28 H 1.08007 * 119.99652 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00279 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46924 * 84.95531 * 3 2 1 31 31 H 1.08992 * 109.47194 * 204.95829 * 3 2 1 32 32 H 1.08998 * 109.46738 * 324.96224 * 3 2 1 33 33 H 1.08996 * 109.47003 * 215.67096 * 4 2 1 34 34 H 1.09002 * 109.46943 * 335.67125 * 4 2 1 35 35 H 1.09000 * 109.69844 * 341.05179 * 6 5 4 36 36 H 1.08993 * 109.69673 * 101.64939 * 6 5 4 37 37 H 1.09000 * 108.84090 * 157.77203 * 7 6 5 38 38 H 1.08994 * 108.84365 * 39.41332 * 7 6 5 39 39 H 0.96996 * 120.00510 * 262.87095 * 10 8 7 40 40 H 1.09000 * 109.46924 * 299.99593 * 13 11 10 41 41 H 1.09000 * 109.47456 * 59.99518 * 13 11 10 42 42 H 0.97005 * 119.99908 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.57521 * 162.94918 * 23 8 7 44 44 H 1.09001 * 109.67336 * 42.64542 * 23 8 7 45 45 H 1.09000 * 109.47009 * 166.92725 * 25 24 23 46 46 H 1.09007 * 109.47121 * 286.92510 * 25 24 23 47 47 H 1.09004 * 109.47254 * 46.92652 * 25 24 23 48 48 H 1.09000 * 109.47349 * 296.59404 * 26 24 23 49 49 H 1.09007 * 109.46807 * 56.59154 * 26 24 23 50 50 H 1.08998 * 109.47598 * 176.58687 * 26 24 23 51 51 H 1.08995 * 108.70875 * 313.18437 * 27 5 4 52 52 H 1.08999 * 108.70892 * 71.19432 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0063 5 7 2.4268 -1.6673 -1.3702 6 6 3.3997 -2.7330 -1.3848 7 6 4.4460 -2.4181 -2.4699 8 6 3.9978 -2.7895 -3.8075 9 1 3.7820 -3.8578 -3.8264 10 7 5.0678 -2.5013 -4.7657 11 6 6.0684 -3.3864 -4.9449 12 8 6.0826 -4.4216 -4.3133 13 6 7.1694 -3.0896 -5.9302 14 16 8.3536 -4.4584 -5.9420 15 6 9.4967 -3.8639 -7.1438 16 1 9.3324 -2.9079 -7.6188 17 6 10.6082 -4.6240 -7.4802 18 7 10.8081 -5.7893 -6.9016 19 14 11.8204 -3.9932 -8.7538 20 1 12.8776 -3.1977 -8.0796 21 1 12.4406 -5.1435 -9.4591 22 1 11.1067 -3.1373 -9.7352 23 6 2.7283 -2.0115 -4.2205 24 6 1.5377 -2.6206 -3.5294 25 6 1.8127 -4.1068 -3.2921 26 6 0.3170 -2.4882 -4.4422 27 6 1.2214 -1.9532 -2.1790 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 2.1670 1.6649 1.0237 31 1 3.0520 1.1539 -0.4336 32 1 1.5165 2.0404 -0.5900 33 1 2.9681 -1.1995 0.6050 34 1 1.4342 -2.0859 0.4334 35 1 3.8875 -2.7985 -0.4123 36 1 2.9064 -3.6777 -1.6133 37 1 5.3633 -2.9611 -2.2425 38 1 4.6588 -1.3493 -2.4541 39 1 5.0562 -1.6736 -5.2712 40 1 6.7430 -2.9691 -6.9261 41 1 7.6792 -2.1710 -5.6397 42 1 11.5848 -6.3207 -7.1369 43 1 2.5958 -2.0755 -5.3004 44 1 2.8262 -0.9666 -3.9261 45 1 1.0746 -4.5064 -2.5967 46 1 1.7484 -4.6439 -4.2385 47 1 2.8112 -4.2291 -2.8722 48 1 0.0907 -1.4331 -4.5957 49 1 0.5290 -2.9578 -5.4029 50 1 -0.5384 -2.9796 -3.9787 51 1 0.5657 -2.6112 -1.6088 52 1 0.6959 -1.0168 -2.3663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750943319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -19.845215 kcal Electronic energy + Delta-G solvation = -28299.058304 eV Core-core repulsion = 24617.988364 eV Total energy + Delta-G solvation = -3681.069941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.86849 -40.14773 -37.79355 -35.94681 -35.07126 -34.58158 -32.98160 -30.56459 -28.83188 -28.27579 -28.04166 -27.86339 -27.64476 -25.82682 -23.65114 -21.87757 -21.13652 -19.98137 -19.51936 -19.26047 -18.01552 -17.61612 -16.88104 -16.83902 -16.53087 -16.30793 -16.06510 -15.67717 -15.46205 -15.11224 -14.87046 -14.72606 -14.48483 -14.26525 -14.13713 -13.89030 -13.79598 -13.53756 -13.22965 -13.16048 -13.05953 -12.92762 -12.88921 -12.70396 -12.51185 -12.48328 -12.26281 -12.03663 -11.76754 -11.73635 -11.68306 -11.66181 -11.27945 -11.14031 -10.89196 -10.80592 -10.26715 -10.01240 -9.93175 -9.06449 -8.65675 -8.34344 -6.12045 1.27853 1.31949 1.42436 1.47628 1.58292 1.67213 2.26830 2.33472 2.99607 3.04772 3.33449 3.56601 3.75070 3.88162 3.92924 3.99059 4.03326 4.10837 4.22881 4.28639 4.32077 4.42052 4.51760 4.54788 4.56208 4.61943 4.66929 4.72557 4.75946 4.79235 4.83760 4.89191 4.90694 4.95372 4.97684 5.10664 5.11255 5.18299 5.22410 5.22758 5.29653 5.37324 5.41142 5.42038 5.52776 5.63259 5.74525 5.96549 6.20123 6.20978 6.30721 6.58596 7.06877 7.31281 8.74834 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.002154 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.519639 B =12998.084023 C =13423.229272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 C -0.112 4.112 4 C 0.091 3.909 5 N -0.542 5.542 6 C 0.051 3.949 7 C -0.118 4.118 8 C 0.136 3.864 9 H 0.080 0.920 10 N -0.712 5.712 11 C 0.534 3.466 12 O -0.565 6.565 13 C -0.130 4.130 14 S -0.150 6.150 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.258 1.258 23 C -0.096 4.096 24 C -0.056 4.056 25 C -0.177 4.177 26 C -0.136 4.136 27 C 0.080 3.920 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.271 0.729 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.034 0.966 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.230 14.868 11.118 31.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.120 4.120 3 C -0.169 4.169 4 C -0.035 4.035 5 N -0.266 5.266 6 C -0.077 4.077 7 C -0.157 4.157 8 C 0.033 3.967 9 H 0.098 0.902 10 N -0.365 5.365 11 C 0.320 3.680 12 O -0.443 6.443 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.694 4.694 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.182 1.182 23 C -0.134 4.134 24 C -0.057 4.057 25 C -0.234 4.234 26 C -0.194 4.194 27 C -0.047 4.047 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.052 0.948 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.900 13.384 11.976 30.702 hybrid contribution 0.707 0.652 -1.128 1.483 sum -24.193 14.037 10.848 30.000 Atomic orbital electron populations 1.23797 0.95113 1.02238 1.01932 1.21703 0.95262 0.95605 0.99439 1.20766 1.00198 0.94002 1.01949 1.21231 0.99382 0.94046 0.88890 1.60600 1.13455 1.40890 1.11621 1.22118 0.93272 0.94025 0.98327 1.20771 0.97993 1.02255 0.94696 1.20410 0.86514 1.01507 0.88270 0.90187 1.46015 1.24140 1.22527 1.43793 1.20018 0.82586 0.83289 0.82110 1.90673 1.77093 1.27393 1.49130 1.23381 0.98456 1.04205 1.02058 1.85543 1.24702 1.26298 1.55743 1.23205 1.11063 1.08469 1.26664 0.90010 1.26135 0.99400 0.94695 0.99009 1.70186 1.29071 1.12627 1.42870 0.84950 0.77506 0.77975 0.77529 1.19305 1.20272 1.18205 1.21554 0.91313 1.00203 1.00339 1.20191 0.95891 0.94640 0.94932 1.22823 1.02518 0.96016 1.02020 1.21905 0.96298 1.02556 0.98610 1.22473 0.90340 0.99730 0.92117 0.87603 0.88621 0.91217 0.92215 0.91615 0.90228 0.94258 0.91164 0.91381 0.94468 0.90861 0.75144 0.87432 0.87540 0.92013 0.90658 0.89787 0.92163 0.92857 0.90626 0.91486 0.92363 0.92029 0.94765 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 12.85 67.78 0.87 -1.29 16 2 C -0.12 -1.54 4.94 -16.49 -0.08 -1.62 16 3 C -0.11 -1.34 10.02 71.24 0.71 -0.63 16 4 C 0.09 1.30 5.00 85.56 0.43 1.73 16 5 N -0.54 -8.63 3.99 -900.81 -3.59 -12.22 16 6 C 0.05 0.98 5.36 87.12 0.47 1.45 16 7 C -0.12 -2.78 4.79 28.74 0.14 -2.64 16 8 C 0.14 3.19 1.89 43.32 0.08 3.27 16 9 H 0.08 2.26 4.43 -2.39 -0.01 2.25 16 10 N -0.71 -18.70 5.02 -450.54 -2.26 -20.97 16 11 C 0.53 20.06 7.65 87.66 0.67 20.73 16 12 O -0.56 -26.29 15.20 -3.03 -0.05 -26.33 16 13 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 14 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 15 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.71 5.49 84.86 0.47 1.17 16 18 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 19 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 C -0.10 -1.61 4.44 30.31 0.13 -1.48 16 24 C -0.06 -0.83 0.71 -52.67 -0.04 -0.87 16 25 C -0.18 -3.17 6.38 71.98 0.46 -2.71 16 26 C -0.14 -1.63 8.01 71.98 0.58 -1.05 16 27 C 0.08 1.13 3.73 86.41 0.32 1.46 16 28 H 0.11 1.00 8.05 -2.91 -0.02 0.98 16 29 H 0.10 1.02 7.99 -2.91 -0.02 1.00 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 33 H 0.08 1.15 7.69 -2.39 -0.02 1.13 16 34 H 0.04 0.55 7.81 -2.39 -0.02 0.53 16 35 H 0.07 1.31 7.35 -2.39 -0.02 1.29 16 36 H 0.07 1.34 4.09 -2.39 -0.01 1.33 16 37 H 0.04 1.13 7.67 -2.39 -0.02 1.11 16 38 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 39 H 0.41 8.16 8.59 -92.71 -0.80 7.36 16 40 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 43 H 0.07 1.20 7.64 -2.39 -0.02 1.18 16 44 H 0.08 1.35 7.79 -2.39 -0.02 1.33 16 45 H 0.06 0.95 7.73 -2.39 -0.02 0.93 16 46 H 0.05 1.02 8.04 -2.38 -0.02 1.00 16 47 H 0.08 1.64 2.80 -2.39 -0.01 1.64 16 48 H 0.07 0.69 8.11 -2.39 -0.02 0.67 16 49 H 0.06 0.74 7.99 -2.38 -0.02 0.72 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.03 0.48 7.47 -2.39 -0.02 0.46 16 52 H 0.08 1.08 6.94 -2.39 -0.02 1.06 16 Total: -1.00 -73.41 406.95 1.64 -71.76 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.10 Total: 25.68 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 6.29 Total: -18.17 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -5.57 Total: -89.32 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -73.41 1.64 -71.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750943319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.917 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds