Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 H 1.09005 * 110.27652 * 52.90966 * 15 14 13 17 17 C 1.54601 * 110.30898 * 290.71733 * 15 14 13 18 18 C 1.54938 * 102.92204 * 219.12371 * 17 15 14 19 19 N 1.48533 * 103.22542 * 37.41425 * 18 17 15 20 20 C 1.46905 * 111.00196 * 200.27722 * 19 18 17 21 21 C 1.53008 * 109.46832 * 307.39786 * 20 19 18 22 22 C 1.52998 * 109.47100 * 294.99874 * 21 20 19 23 23 C 1.52996 * 109.46910 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47171 * 60.00089 * 23 22 21 25 25 C 1.52998 * 109.47131 * 299.99776 * 24 23 22 26 26 C 1.53000 * 109.46671 * 174.99707 * 21 20 19 27 27 C 1.47904 * 105.82183 * 320.79232 * 19 18 17 28 28 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 30 30 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 34 34 H 1.08992 * 110.72140 * 337.48167 * 17 15 14 35 35 H 1.09003 * 110.72439 * 100.76530 * 17 15 14 36 36 H 1.08991 * 110.66863 * 278.98068 * 18 17 15 37 37 H 1.09003 * 110.80684 * 155.91402 * 18 17 15 38 38 H 1.08994 * 109.46903 * 67.39627 * 20 19 18 39 39 H 1.08995 * 109.47354 * 187.40190 * 20 19 18 40 40 H 1.08998 * 109.46797 * 54.99809 * 21 20 19 41 41 H 1.09004 * 109.46639 * 299.99968 * 22 21 20 42 42 H 1.08997 * 109.47489 * 59.99793 * 22 21 20 43 43 H 1.08995 * 109.47040 * 299.99362 * 23 22 21 44 44 H 1.09009 * 109.46676 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.46819 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.47732 * 59.99697 * 24 23 22 47 47 H 1.09007 * 109.47133 * 300.00421 * 25 24 23 48 48 H 1.08997 * 109.47489 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47057 * 299.99641 * 26 21 20 50 50 H 1.08995 * 109.46940 * 60.00364 * 26 21 20 51 51 H 1.09001 * 109.91575 * 265.97461 * 27 19 18 52 52 H 1.09004 * 109.91707 * 144.68469 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0029 13 7 2.8438 -6.3432 0.0039 14 6 2.3300 -7.7151 0.0039 15 6 3.5019 -8.6987 0.0049 16 1 4.1872 -8.4689 0.8209 17 6 4.2435 -8.6511 -1.3508 18 6 4.5859 -10.1396 -1.6109 19 7 3.3900 -10.8576 -1.1004 20 6 3.7024 -12.2644 -0.8154 21 6 4.3490 -12.9028 -2.0464 22 6 3.3375 -12.9371 -3.1938 23 6 3.9840 -13.5760 -4.4246 24 6 4.4220 -15.0028 -4.0879 25 6 5.4335 -14.9684 -2.9405 26 6 4.7875 -14.3295 -1.7101 27 6 2.9865 -10.1443 0.1308 28 1 -0.4850 0.8401 -0.0004 29 1 3.1242 -3.7307 0.8928 30 1 3.1243 -3.7322 -0.8872 31 1 3.8006 -6.1837 0.0041 32 1 1.7211 -7.8751 0.8938 33 1 1.7216 -7.8753 -0.8862 34 1 3.5919 -8.2627 -2.1334 35 1 5.1523 -8.0542 -1.2726 36 1 5.4766 -10.4323 -1.0551 37 1 4.7205 -10.3255 -2.6765 38 1 4.3916 -12.3201 0.0271 39 1 2.7842 -12.7979 -0.5696 40 1 5.2179 -12.3165 -2.3455 41 1 2.4686 -13.5234 -2.8946 42 1 3.0251 -11.9208 -3.4334 43 1 4.8530 -12.9901 -4.7239 44 1 3.2631 -13.6009 -5.2419 45 1 4.8829 -15.4577 -4.9646 46 1 3.5530 -15.5886 -3.7886 47 1 6.3026 -14.3825 -3.2398 48 1 5.7459 -15.9848 -2.7009 49 1 5.5082 -14.3049 -0.8927 50 1 3.9186 -14.9156 -1.4110 51 1 3.4342 -10.6237 1.0014 52 1 1.9002 -10.1446 0.2211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753118290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -88.675707 kcal Electronic energy + Delta-G solvation = -26746.764898 eV Core-core repulsion = 23062.710244 eV Total energy + Delta-G solvation = -3684.054655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.94714 -40.29218 -38.93950 -36.13734 -34.57807 -33.92694 -31.79347 -31.52672 -30.67962 -29.97762 -27.68700 -26.55536 -25.18068 -23.40474 -22.98046 -21.80531 -21.35947 -21.15307 -20.31984 -19.78281 -17.78584 -17.63127 -16.92092 -16.87054 -16.54867 -16.43930 -16.11612 -15.73047 -15.33501 -15.02553 -14.96619 -14.82686 -14.65676 -14.57321 -14.41782 -13.77864 -13.67833 -13.50681 -13.16210 -13.11844 -12.97532 -12.85430 -12.68633 -12.62881 -12.58735 -12.27811 -12.15520 -11.99469 -11.92316 -11.73888 -11.64977 -11.56991 -11.23954 -11.12102 -10.97927 -10.86897 -10.83751 -10.26978 -10.10309 -9.29716 -8.66226 -8.33599 -6.12045 1.27788 1.44729 1.47804 1.57576 1.62813 2.27054 2.31299 3.00446 3.05024 3.32758 3.57822 3.60237 3.80189 3.82190 3.91197 3.96467 4.03711 4.23510 4.30251 4.35603 4.39080 4.41227 4.42823 4.48578 4.51723 4.58304 4.61820 4.64861 4.69057 4.76132 4.79464 4.81910 4.88886 4.91085 4.95629 5.04830 5.07391 5.15001 5.21880 5.27103 5.29488 5.32660 5.35104 5.42206 5.45309 5.46199 5.54783 5.63558 5.98162 6.14939 6.20336 6.52555 7.07393 7.26387 8.75394 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.001530 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.082927 B =18299.521660 C =18447.909635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.097 4.097 16 H 0.100 0.900 17 C -0.120 4.120 18 C 0.040 3.960 19 N -0.527 5.527 20 C 0.053 3.947 21 C -0.080 4.080 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.112 4.112 27 C 0.044 3.956 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.059 0.941 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.068 -31.386 -3.866 35.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.011 3.989 15 C -0.116 4.116 16 H 0.118 0.882 17 C -0.158 4.158 18 C -0.087 4.087 19 N -0.251 5.251 20 C -0.075 4.075 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.084 4.084 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.508 -31.673 -4.243 35.095 hybrid contribution 2.158 1.299 0.600 2.589 sum 16.666 -30.374 -3.643 34.837 Atomic orbital electron populations 1.70183 1.08012 1.28664 1.47920 1.26135 0.95954 1.03334 0.93695 0.84996 0.77792 0.75651 0.79504 1.18640 1.20424 1.18628 1.23186 0.95381 0.91996 1.59025 0.89832 1.85602 1.10704 0.99302 1.97063 1.23370 1.03486 0.94309 1.06830 1.20090 0.86229 0.86763 0.75134 1.90694 1.17569 1.86163 1.50288 1.45714 1.10228 1.05055 1.75372 1.21417 0.96457 0.79742 1.01322 1.22166 0.96053 0.93729 0.99657 0.88226 1.22618 1.00638 0.96644 0.95901 1.23199 0.91817 0.92770 1.00956 1.64783 1.31741 1.02179 1.26391 1.22368 0.99749 0.88588 0.96802 1.21186 0.98100 0.96151 0.94464 1.21425 0.97535 1.00547 0.94541 1.21550 1.00307 0.96354 0.97593 1.21539 0.99103 0.96606 0.98451 1.21497 0.98117 1.00831 0.95002 1.21528 1.00513 0.95047 0.97879 1.22813 1.01337 0.92289 0.91954 0.92004 0.87123 0.87177 0.74701 0.92489 0.92870 0.91820 0.89156 0.92870 0.89997 0.94198 0.91088 0.91135 0.92885 0.92327 0.92261 0.92362 0.91817 0.92263 0.92105 0.91476 0.91680 0.92040 0.92238 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.55 -31.40 9.50 67.96 0.65 -30.76 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 11 C 0.53 19.78 7.85 87.66 0.69 20.47 16 12 O -0.57 -26.96 15.86 -3.03 -0.05 -27.00 16 13 N -0.71 -17.62 5.43 -463.06 -2.51 -20.13 16 14 C 0.13 3.02 4.76 86.38 0.41 3.43 16 15 C -0.10 -1.40 3.03 -9.91 -0.03 -1.43 16 16 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 17 C -0.12 -1.63 6.41 31.80 0.20 -1.42 16 18 C 0.04 0.51 5.09 86.65 0.44 0.95 16 19 N -0.53 -7.79 4.85 -883.00 -4.28 -12.07 16 20 C 0.05 0.65 4.42 86.31 0.38 1.04 16 21 C -0.08 -0.89 1.87 -10.79 -0.02 -0.91 16 22 C -0.10 -1.35 5.09 30.59 0.16 -1.19 16 23 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 24 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 25 C -0.12 -1.04 5.92 30.58 0.18 -0.86 16 26 C -0.11 -1.04 5.20 30.58 0.16 -0.88 16 27 C 0.04 0.65 6.36 86.45 0.55 1.20 16 28 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.42 7.26 8.41 -92.71 -0.78 6.48 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.42 8.00 -2.39 -0.02 1.40 16 34 H 0.06 1.12 7.76 -2.39 -0.02 1.10 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.58 8.01 -2.39 -0.02 0.56 16 37 H 0.08 1.06 7.55 -2.39 -0.02 1.05 16 38 H 0.04 0.45 7.81 -2.39 -0.02 0.43 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.81 6.51 -2.39 -0.02 0.79 16 41 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.06 0.95 7.75 -2.39 -0.02 0.93 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.06 0.74 7.57 -2.39 -0.02 0.72 16 52 H 0.07 1.25 7.68 -2.38 -0.02 1.24 16 Total: -1.00 -74.89 415.11 -0.57 -75.45 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.09 Total: 19.96 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.03 Total: -15.99 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -6.51 Total: -88.23 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -74.89 -0.57 -75.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753118290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.221 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds