Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86808 * 119.99692 * 2 1 4 4 H 1.48498 * 109.46883 * 239.99795 * 3 2 1 5 5 H 1.48500 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47190 * 119.99562 * 3 2 1 7 7 C 1.38794 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99847 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00438 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00208 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47236 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99448 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00014 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99911 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 11 16 16 H 1.09001 * 110.76719 * 308.20269 * 15 14 13 17 17 C 1.55141 * 110.70440 * 71.39803 * 15 14 13 18 18 C 1.54915 * 101.65250 * 154.03892 * 17 15 14 19 19 N 1.47844 * 104.79425 * 322.93383 * 18 17 15 20 20 C 1.46902 * 111.00193 * 146.36297 * 19 18 17 21 21 C 1.52997 * 109.47358 * 173.42615 * 20 19 18 22 22 C 1.53001 * 109.46983 * 296.00873 * 21 20 19 23 23 C 1.53000 * 109.47215 * 179.97438 * 22 21 20 24 24 C 1.53009 * 109.46697 * 60.00070 * 23 22 21 25 25 C 1.52995 * 109.47004 * 299.99754 * 24 23 22 26 26 C 1.53000 * 109.47192 * 60.00549 * 25 24 23 27 27 C 1.47439 * 108.56926 * 24.09378 * 19 18 17 28 28 H 0.97003 * 120.00490 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47299 * 60.00344 * 10 9 7 30 30 H 1.09001 * 109.47487 * 300.00266 * 10 9 7 31 31 H 0.97000 * 119.99867 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.47327 * 60.00150 * 14 13 11 33 33 H 1.09006 * 109.47002 * 300.00084 * 14 13 11 34 34 H 1.09005 * 110.99425 * 272.12797 * 17 15 14 35 35 H 1.08993 * 110.99187 * 35.94890 * 17 15 14 36 36 H 1.08998 * 110.37733 * 204.09891 * 18 17 15 37 37 H 1.09000 * 110.46378 * 81.80581 * 18 17 15 38 38 H 1.08996 * 109.46695 * 293.42901 * 20 19 18 39 39 H 1.09007 * 109.46779 * 53.42427 * 20 19 18 40 40 H 1.08995 * 109.47138 * 56.00412 * 21 20 19 41 41 H 1.09000 * 109.47412 * 300.00108 * 22 21 20 42 42 H 1.09006 * 109.47314 * 59.99981 * 22 21 20 43 43 H 1.09000 * 109.47257 * 300.00495 * 23 22 21 44 44 H 1.08995 * 109.47076 * 179.97438 * 23 22 21 45 45 H 1.09004 * 109.46498 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46920 * 60.00219 * 24 23 22 47 47 H 1.09000 * 109.47662 * 300.00011 * 25 24 23 48 48 H 1.09006 * 109.47087 * 180.02562 * 25 24 23 49 49 H 1.09001 * 109.47849 * 179.97438 * 26 25 24 50 50 H 1.09000 * 109.47257 * 59.99214 * 26 25 24 51 51 H 1.09001 * 109.89089 * 239.60799 * 27 19 18 52 52 H 1.08998 * 109.89024 * 118.41717 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0011 13 7 2.8444 -6.3430 0.0008 14 6 2.3308 -7.7150 0.0008 15 6 3.5028 -8.6984 0.0009 16 1 4.2041 -8.4640 -0.7999 17 6 4.2205 -8.6963 1.3764 18 6 4.8392 -10.1161 1.4087 19 7 3.8303 -10.9823 0.7624 20 6 4.4729 -12.0705 0.0134 21 6 3.4036 -13.0355 -0.5024 22 6 2.6961 -13.6941 0.6837 23 6 1.6263 -14.6586 0.1679 24 6 2.2850 -15.7364 -0.6955 25 6 2.9924 -15.0779 -1.8816 26 6 4.0622 -14.1133 -1.3658 27 6 2.9966 -10.1507 -0.1248 28 1 -0.4851 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1247 -3.7312 -0.8894 31 1 3.8012 -6.1833 0.0004 32 1 1.7219 -7.8750 -0.8890 33 1 1.7225 -7.8751 0.8910 34 1 4.9964 -7.9314 1.4109 35 1 3.5065 -8.5629 2.1891 36 1 5.0083 -10.4331 2.4377 37 1 5.7733 -10.1376 0.8474 38 1 5.0244 -11.6548 -0.8298 39 1 5.1601 -12.6061 0.6685 40 1 2.6761 -12.4861 -1.0998 41 1 3.4235 -14.2435 1.2813 42 1 2.2265 -12.9263 1.2986 43 1 0.8989 -14.1088 -0.4294 44 1 1.1226 -15.1281 1.0129 45 1 1.5228 -16.4239 -1.0626 46 1 3.0123 -16.2862 -0.0982 47 1 2.2650 -14.5281 -2.4789 48 1 3.4613 -15.8457 -2.4970 49 1 4.5666 -13.6444 -2.2107 50 1 4.7896 -14.6631 -0.7685 51 1 1.9533 -10.2079 0.1857 52 1 3.0982 -10.4909 -1.1554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753118295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = -89.507949 kcal Electronic energy + Delta-G solvation = -26766.044047 eV Core-core repulsion = 23081.953304 eV Total energy + Delta-G solvation = -3684.090744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.93914 -40.27224 -38.94914 -36.12852 -34.58139 -33.90091 -31.95731 -31.55347 -30.42546 -29.99101 -27.70165 -26.67856 -25.22923 -23.42733 -22.51293 -21.91262 -21.70128 -21.06388 -20.30634 -19.78034 -17.80673 -17.71364 -16.96494 -16.87384 -16.56596 -16.26616 -16.18632 -15.72589 -15.28772 -15.03180 -15.02639 -14.78905 -14.67150 -14.41823 -14.17830 -14.06622 -13.73759 -13.59018 -13.16749 -13.13778 -12.98356 -12.85895 -12.76256 -12.65683 -12.59078 -12.21911 -12.08806 -11.94757 -11.89647 -11.73514 -11.67993 -11.64380 -11.24695 -11.12543 -10.96389 -10.87694 -10.83303 -10.27663 -10.11870 -9.20911 -8.66703 -8.34019 -6.12562 1.27222 1.44405 1.47350 1.57070 1.61581 2.26129 2.30036 2.99996 3.01600 3.32069 3.55627 3.59339 3.80061 3.84831 3.92833 3.97671 4.03833 4.24019 4.28920 4.33669 4.36487 4.40148 4.43806 4.49512 4.51147 4.55052 4.62476 4.65420 4.70381 4.75006 4.80484 4.82550 4.88044 4.90288 4.97870 5.06061 5.09043 5.14015 5.22594 5.28707 5.30443 5.33342 5.36525 5.41769 5.45095 5.46809 5.57705 5.64750 6.04132 6.18738 6.19892 6.50683 7.06987 7.24764 8.74939 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.001567 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.549774 B =17858.597696 C =18279.510590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.135 3.865 15 C -0.109 4.109 16 H 0.096 0.904 17 C -0.123 4.123 18 C 0.045 3.955 19 N -0.534 5.534 20 C 0.058 3.942 21 C -0.080 4.080 22 C -0.099 4.099 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.111 4.111 27 C 0.054 3.946 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.070 0.930 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.165 -31.434 -0.782 34.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.364 5.364 14 C 0.011 3.989 15 C -0.128 4.128 16 H 0.114 0.886 17 C -0.161 4.161 18 C -0.083 4.083 19 N -0.258 5.258 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.137 4.137 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.075 4.075 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.731 -31.952 -0.398 34.397 hybrid contribution 2.095 1.712 -0.594 2.770 sum 14.826 -30.240 -0.992 33.694 Atomic orbital electron populations 1.70181 1.07999 1.28677 1.47918 1.26134 0.95956 1.03331 0.93693 0.84999 0.77795 0.75662 0.79501 1.18646 1.20420 1.18632 1.23183 0.95379 0.92004 1.59027 0.89843 1.85596 1.10659 0.99285 1.97063 1.23371 1.03513 0.94326 1.06825 1.20083 0.86225 0.86741 0.75123 1.90695 1.17531 1.86149 1.50252 1.45710 1.10226 1.05034 1.75423 1.21294 0.96342 0.79721 1.01499 1.22540 0.96383 0.94486 0.99418 0.88604 1.22802 1.00053 0.97225 0.96012 1.23027 0.93722 0.91361 1.00140 1.63582 1.21454 1.10863 1.29942 1.22336 0.95874 0.92490 0.96309 1.21149 0.96804 0.95426 0.96501 1.21385 0.97518 0.97806 0.96988 1.21564 0.97962 0.97121 0.99323 1.21532 0.99654 0.97547 0.96852 1.21513 0.97976 0.98584 0.97543 1.21530 0.97846 0.96451 0.99064 1.22731 0.98415 0.90077 0.96268 0.91996 0.87159 0.87167 0.74731 0.92445 0.92570 0.89290 0.91466 0.89998 0.92601 0.94487 0.90468 0.92086 0.92450 0.92253 0.92850 0.92188 0.92010 0.91881 0.92584 0.91438 0.91889 0.91602 0.91197 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.33 9.50 67.95 0.65 -30.68 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.61 7.85 87.66 0.69 20.30 16 12 O -0.57 -26.66 15.86 -3.04 -0.05 -26.70 16 13 N -0.71 -17.41 5.47 -463.06 -2.53 -19.95 16 14 C 0.14 2.98 4.97 86.38 0.43 3.40 16 15 C -0.11 -1.57 2.96 -9.61 -0.03 -1.60 16 16 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 17 C -0.12 -1.63 6.44 31.98 0.21 -1.43 16 18 C 0.04 0.55 6.71 86.78 0.58 1.13 16 19 N -0.53 -7.49 4.60 -885.54 -4.07 -11.56 16 20 C 0.06 0.68 3.93 86.30 0.34 1.02 16 21 C -0.08 -0.95 2.10 -10.79 -0.02 -0.97 16 22 C -0.10 -1.30 5.08 30.59 0.16 -1.15 16 23 C -0.12 -1.52 5.92 30.60 0.18 -1.34 16 24 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 25 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 26 C -0.11 -1.10 5.21 30.59 0.16 -0.94 16 27 C 0.05 0.80 5.71 86.65 0.49 1.29 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.42 7.20 8.47 -92.71 -0.79 6.41 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.43 8.00 -2.38 -0.02 1.41 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.11 7.94 -2.39 -0.02 1.09 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.58 7.81 -2.39 -0.02 0.56 16 38 H 0.04 0.42 8.08 -2.39 -0.02 0.40 16 39 H 0.08 0.85 8.12 -2.38 -0.02 0.84 16 40 H 0.06 0.86 6.77 -2.39 -0.02 0.84 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.97 7.72 -2.38 -0.02 0.95 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 49 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 1.22 7.82 -2.39 -0.02 1.20 16 52 H 0.06 0.89 6.73 -2.39 -0.02 0.87 16 Total: -1.00 -74.20 416.18 -0.32 -74.52 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.09 Total: 20.24 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 5.10 Total: -16.45 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -6.32 Total: -87.40 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -74.20 -0.32 -74.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753118295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.985 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds