Wall clock time and date at job start Sat Apr 11 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.52994 * 109.47253 * 270.00133 * 3 2 1 5 5 N 1.46898 * 109.47282 * 180.02562 * 4 3 2 6 6 C 1.46897 * 111.00371 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47619 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99555 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00443 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00302 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00152 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00297 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99710 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00072 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47147 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46823 * 120.00160 * 14 12 10 17 17 H 1.48497 * 109.46921 * 240.00053 * 14 12 10 18 18 C 1.34777 * 119.99832 * 180.02562 * 2 1 3 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 2 1 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 2 1 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 2 22 22 H 1.08999 * 109.60375 * 54.67471 * 21 20 18 23 23 C 1.53351 * 109.60164 * 175.00078 * 21 20 18 24 24 C 1.53062 * 108.42487 * 187.28427 * 23 21 20 25 25 C 1.50176 * 109.89269 * 311.10259 * 24 23 21 26 26 O 1.21280 * 118.24639 * 197.56301 * 25 24 23 27 27 N 1.33349 * 123.50981 * 17.57475 * 25 24 23 28 28 C 1.45754 * 124.10660 * 357.78559 * 27 25 24 29 29 H 1.08999 * 109.47333 * 269.99341 * 1 2 3 30 30 H 1.08997 * 109.47024 * 30.00155 * 1 2 3 31 31 H 1.09000 * 109.46875 * 149.99915 * 1 2 3 32 32 H 1.09000 * 109.47082 * 30.00019 * 3 2 1 33 33 H 1.09004 * 109.46754 * 150.00286 * 3 2 1 34 34 H 1.09001 * 109.47335 * 300.00356 * 4 3 2 35 35 H 1.08997 * 109.47465 * 59.99775 * 4 3 2 36 36 H 1.00895 * 111.00276 * 303.95694 * 5 4 3 37 37 H 1.09002 * 109.47122 * 299.99930 * 6 5 4 38 38 H 1.09002 * 109.47075 * 59.99695 * 6 5 4 39 39 H 0.97004 * 120.00157 * 359.97438 * 9 7 6 40 40 H 0.97000 * 119.99863 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47152 * 60.00245 * 20 18 2 42 42 H 1.09001 * 109.46980 * 300.00345 * 20 18 2 43 43 H 1.08991 * 109.67213 * 307.02266 * 23 21 20 44 44 H 1.09004 * 109.67111 * 67.51341 * 23 21 20 45 45 H 1.08999 * 109.40072 * 71.22953 * 24 23 21 46 46 H 1.09002 * 109.40271 * 190.96995 * 24 23 21 47 47 H 0.97002 * 117.94683 * 177.77514 * 27 25 24 48 48 H 1.08997 * 109.29945 * 258.75784 * 28 27 25 49 49 H 1.09004 * 109.30224 * 139.38243 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1875 2.9823 -1.4424 6 6 3.4512 3.4380 -2.8138 7 6 4.2055 4.7420 -2.7736 8 8 4.4945 5.2428 -1.7073 9 7 4.5581 5.3523 -3.9224 10 6 5.2448 6.5383 -3.8858 11 1 5.5029 6.9839 -2.9364 12 6 5.6087 7.1673 -5.0702 13 7 5.2952 6.6249 -6.2253 14 14 6.5437 8.7837 -5.0202 15 1 6.7721 9.1800 -3.6075 16 1 7.8505 8.6210 -5.7067 17 1 5.7513 9.8352 -5.7069 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0001 20 6 1.3854 -2.4723 -0.0005 21 6 2.3797 -3.6352 -0.0005 22 1 3.0686 -3.5274 0.8372 23 6 1.6202 -4.9615 0.1254 24 6 2.6405 -6.0880 0.3064 25 6 3.7189 -5.9725 -0.7324 26 8 4.4170 -6.9411 -0.9451 27 7 3.9500 -4.8618 -1.4332 28 6 3.1616 -3.6417 -1.3147 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1383 0.5138 34 1 3.0415 0.9508 -1.9563 35 1 1.5001 1.8407 -1.9563 36 1 2.6920 3.6863 -0.9162 37 1 4.0471 2.6900 -3.3369 38 1 2.5059 3.5806 -3.3374 39 1 4.3267 4.9520 -4.7751 40 1 5.5496 7.0638 -7.0521 41 1 0.7584 -2.5299 -0.8903 42 1 0.7590 -2.5302 0.8897 43 1 0.9574 -4.9242 0.9898 44 1 1.0356 -5.1367 -0.7778 45 1 3.0850 -6.0177 1.2991 46 1 2.1395 -7.0505 0.2027 47 1 4.6893 -4.8661 -2.0612 48 1 2.4635 -3.5813 -2.1496 49 1 3.8269 -2.7786 -1.3423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753197168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:57 Heat of formation + Delta-G solvation = -113.624730 kcal Electronic energy + Delta-G solvation = -28949.823060 eV Core-core repulsion = 24718.393320 eV Total energy + Delta-G solvation = -4231.429740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -40.92968 -40.01647 -38.32022 -37.27675 -36.31645 -35.05994 -33.87798 -33.75409 -31.96165 -31.24575 -29.96036 -27.52307 -27.11448 -25.69833 -24.86414 -23.91142 -22.64161 -21.93109 -19.66922 -19.44344 -19.15762 -17.90292 -17.59713 -17.37907 -16.59323 -16.50098 -16.29781 -15.79157 -15.66568 -15.51423 -14.88986 -14.58903 -14.49799 -14.22750 -13.91463 -13.80975 -13.65580 -13.60300 -13.42116 -13.34322 -13.17775 -12.77672 -12.55411 -12.24593 -12.08469 -11.98531 -11.70409 -11.56587 -11.51608 -11.46041 -11.35752 -11.16033 -11.01173 -10.34903 -10.23565 -10.13679 -9.99273 -9.53018 -9.35652 -9.03992 -8.47715 -8.10414 -7.97211 -6.42797 -3.83583 2.28789 2.34965 2.58380 2.98836 3.15815 3.26475 3.33892 3.89357 3.94830 4.04070 4.12243 4.13266 4.29193 4.38915 4.42487 4.62733 4.77903 4.82844 4.86301 4.92264 4.97251 5.03189 5.06619 5.14018 5.17752 5.23196 5.25036 5.26389 5.30928 5.34778 5.38899 5.59994 5.70029 5.76357 5.79132 5.90076 5.96683 6.16498 6.26152 6.45655 7.01095 7.03522 7.14328 7.54633 7.60620 7.85109 7.91076 8.05455 8.60013 9.16934 9.53095 10.04361 10.75035 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.001707 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.439731 B =16399.138167 C =17547.792233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.116 3.884 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.054 3.946 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.508 3.492 19 O -0.528 6.528 20 C -0.132 4.132 21 C -0.090 4.090 22 H 0.091 0.909 23 C -0.120 4.120 24 C -0.134 4.134 25 C 0.517 3.483 26 O -0.564 6.564 27 N -0.716 5.716 28 C 0.107 3.893 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.349 0.651 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.401 0.599 48 H 0.062 0.938 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 -21.978 10.889 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.350 5.350 3 C -0.007 4.007 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.079 4.079 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.296 3.704 19 O -0.404 6.404 20 C -0.173 4.173 21 C -0.109 4.109 22 H 0.110 0.890 23 C -0.158 4.158 24 C -0.174 4.174 25 C 0.304 3.696 26 O -0.443 6.443 27 N -0.367 5.367 28 C -0.017 4.017 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.168 0.832 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.236 0.764 48 H 0.080 0.920 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.908 -22.348 11.543 29.239 hybrid contribution -0.524 1.095 -1.278 1.762 sum -15.431 -21.253 10.266 28.199 Atomic orbital electron populations 1.21858 0.79395 1.03511 1.02053 1.47858 1.07038 1.06298 1.73797 1.21436 0.98356 0.83778 0.97133 1.22251 0.96109 0.93295 0.96581 1.59922 1.51191 1.04943 1.13793 1.21651 0.99100 0.97254 0.89915 1.19790 0.85617 0.86926 0.85057 1.90526 1.59397 1.67132 1.29628 1.41867 1.50007 1.21409 1.06758 1.19764 1.30850 0.97649 0.94587 0.87827 1.25273 0.98170 0.99924 0.94640 1.69620 1.47139 1.40079 0.97485 0.85790 0.78867 0.81035 0.78596 1.19198 1.20722 1.20783 1.20693 0.88197 0.85338 0.76147 1.90736 1.13773 1.87105 1.48778 1.21728 0.98964 0.91598 1.04971 1.21239 0.97001 0.93506 0.99158 0.89017 1.21754 0.97606 0.93041 1.03352 1.21620 0.95605 1.01166 0.99010 1.20201 0.85174 0.82144 0.82100 1.90766 1.49604 1.36320 1.67653 1.45469 1.34917 1.13049 1.43245 1.21648 0.95870 0.87349 0.96825 0.92286 0.90744 0.90895 0.90477 0.88524 0.90818 0.95702 0.83229 0.89587 0.93917 0.77466 0.91920 0.88379 0.88088 0.90161 0.90871 0.88103 0.88045 0.76391 0.92019 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 10.24 59.85 0.61 0.90 16 2 N -0.62 -4.69 2.87 -181.57 -0.52 -5.21 16 3 C 0.12 1.17 5.67 -4.05 -0.02 1.15 16 4 C 0.05 0.58 6.01 -3.83 -0.02 0.56 16 5 N -0.67 -10.60 6.12 -115.06 -0.70 -11.30 16 6 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 7 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 8 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 9 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.51 4.27 7.43 -10.98 -0.08 4.19 16 19 O -0.53 -6.63 13.64 5.56 0.08 -6.55 16 20 C -0.13 -0.56 3.73 -27.88 -0.10 -0.66 16 21 C -0.09 -0.49 1.89 -90.48 -0.17 -0.66 16 22 H 0.09 0.66 7.93 -51.93 -0.41 0.25 16 23 C -0.12 -0.45 5.33 -26.52 -0.14 -0.59 16 24 C -0.13 -0.80 6.03 -28.10 -0.17 -0.97 16 25 C 0.52 5.10 7.71 -11.87 -0.09 5.00 16 26 O -0.56 -8.06 17.78 5.56 0.10 -7.96 16 27 N -0.72 -6.04 5.45 -61.39 -0.33 -6.38 16 28 C 0.11 0.75 6.12 -4.48 -0.03 0.72 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.07 0.13 6.44 -51.93 -0.33 -0.20 16 32 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.10 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.10 0.24 7.36 -51.93 -0.38 -0.14 16 42 H 0.10 0.23 8.11 -51.93 -0.42 -0.19 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 0.24 8.13 -51.93 -0.42 -0.18 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.40 3.33 8.80 -40.82 -0.36 2.97 16 48 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 49 H 0.10 0.90 6.23 -51.93 -0.32 0.58 16 LS Contribution 401.77 15.07 6.05 6.05 Total: -1.00 -36.86 401.77 -8.02 -44.88 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.84 Total: 11.56 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -0.58 Total: 12.87 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.89 Total: -61.12 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: 0.26 Total: -30.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.86 -8.02 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753197168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.740 kcal (2) G-P(sol) polarization free energy of solvation -36.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds