Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99896 * 2 1 4 4 C 1.52994 * 109.47253 * 270.00133 * 3 2 1 5 5 N 1.46898 * 109.47282 * 180.02562 * 4 3 2 6 6 C 1.46897 * 111.00371 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47619 * 180.02562 * 6 5 4 8 8 O 1.21300 * 119.99555 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00443 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00302 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00152 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00297 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99710 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00072 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47147 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46823 * 120.00160 * 14 12 10 17 17 H 1.48497 * 109.46921 * 240.00053 * 14 12 10 18 18 C 1.34777 * 119.99832 * 180.02562 * 2 1 3 19 19 O 1.21278 * 119.99854 * 180.02562 * 18 2 1 20 20 C 1.50703 * 120.00161 * 359.97438 * 18 2 1 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 2 22 22 H 1.08999 * 109.60375 * 54.67471 * 21 20 18 23 23 C 1.53351 * 109.60164 * 175.00078 * 21 20 18 24 24 C 1.53062 * 108.42487 * 187.28427 * 23 21 20 25 25 C 1.50176 * 109.89269 * 311.10259 * 24 23 21 26 26 O 1.21280 * 118.24639 * 197.56301 * 25 24 23 27 27 N 1.33349 * 123.50981 * 17.57475 * 25 24 23 28 28 C 1.45754 * 124.10660 * 357.78559 * 27 25 24 29 29 H 1.08999 * 109.47333 * 269.99341 * 1 2 3 30 30 H 1.08997 * 109.47024 * 30.00155 * 1 2 3 31 31 H 1.09000 * 109.46875 * 149.99915 * 1 2 3 32 32 H 1.09000 * 109.47082 * 30.00019 * 3 2 1 33 33 H 1.09004 * 109.46754 * 150.00286 * 3 2 1 34 34 H 1.09001 * 109.47335 * 300.00356 * 4 3 2 35 35 H 1.08997 * 109.47465 * 59.99775 * 4 3 2 36 36 H 1.00895 * 111.00276 * 303.95694 * 5 4 3 37 37 H 1.09002 * 109.47122 * 299.99930 * 6 5 4 38 38 H 1.09002 * 109.47075 * 59.99695 * 6 5 4 39 39 H 0.97004 * 120.00157 * 359.97438 * 9 7 6 40 40 H 0.97000 * 119.99863 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47152 * 60.00245 * 20 18 2 42 42 H 1.09001 * 109.46980 * 300.00345 * 20 18 2 43 43 H 1.08991 * 109.67213 * 307.02266 * 23 21 20 44 44 H 1.09004 * 109.67111 * 67.51341 * 23 21 20 45 45 H 1.08999 * 109.40072 * 71.22953 * 24 23 21 46 46 H 1.09002 * 109.40271 * 190.96995 * 24 23 21 47 47 H 0.97002 * 117.94683 * 177.77514 * 27 25 24 48 48 H 1.08997 * 109.29945 * 258.75784 * 28 27 25 49 49 H 1.09004 * 109.30224 * 139.38243 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1875 2.9823 -1.4424 6 6 3.4512 3.4380 -2.8138 7 6 4.2055 4.7420 -2.7736 8 8 4.4945 5.2428 -1.7073 9 7 4.5581 5.3523 -3.9224 10 6 5.2448 6.5383 -3.8858 11 1 5.5029 6.9839 -2.9364 12 6 5.6087 7.1673 -5.0702 13 7 5.2952 6.6249 -6.2253 14 14 6.5437 8.7837 -5.0202 15 1 6.7721 9.1800 -3.6075 16 1 7.8505 8.6210 -5.7067 17 1 5.7513 9.8352 -5.7069 18 6 2.1389 -1.1672 -0.0005 19 8 3.3517 -1.1672 -0.0001 20 6 1.3854 -2.4723 -0.0005 21 6 2.3797 -3.6352 -0.0005 22 1 3.0686 -3.5274 0.8372 23 6 1.6202 -4.9615 0.1254 24 6 2.6405 -6.0880 0.3064 25 6 3.7189 -5.9725 -0.7324 26 8 4.4170 -6.9411 -0.9451 27 7 3.9500 -4.8618 -1.4332 28 6 3.1616 -3.6417 -1.3147 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1383 0.5138 34 1 3.0415 0.9508 -1.9563 35 1 1.5001 1.8407 -1.9563 36 1 2.6920 3.6863 -0.9162 37 1 4.0471 2.6900 -3.3369 38 1 2.5059 3.5806 -3.3374 39 1 4.3267 4.9520 -4.7751 40 1 5.5496 7.0638 -7.0521 41 1 0.7584 -2.5299 -0.8903 42 1 0.7590 -2.5302 0.8897 43 1 0.9574 -4.9242 0.9898 44 1 1.0356 -5.1367 -0.7778 45 1 3.0850 -6.0177 1.2991 46 1 2.1395 -7.0505 0.2027 47 1 4.6893 -4.8661 -2.0612 48 1 2.4635 -3.5813 -2.1496 49 1 3.8269 -2.7786 -1.3423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753197168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -144.359409 kcal Electronic energy + Delta-G solvation = -28951.155816 eV Core-core repulsion = 24718.393320 eV Total energy + Delta-G solvation = -4232.762496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -41.54701 -40.72132 -40.16145 -38.01725 -37.24774 -36.20104 -35.69372 -34.38751 -33.29772 -32.48799 -30.94077 -28.32686 -27.89103 -26.86354 -25.66871 -25.11988 -23.48892 -22.66074 -21.16060 -20.17464 -19.95599 -19.84258 -18.25148 -18.05358 -17.88105 -17.24046 -17.13965 -17.04676 -16.48315 -16.45147 -16.26672 -15.88390 -15.52183 -15.38280 -14.98895 -14.82754 -14.70761 -14.38739 -14.07051 -14.02112 -13.89856 -13.74546 -13.52719 -13.34745 -13.14492 -12.99662 -12.92107 -12.72356 -12.46470 -12.41950 -12.21989 -12.12108 -12.02019 -11.88355 -11.73287 -11.53126 -10.85551 -10.65936 -10.40287 -10.07807 -10.03626 -9.63796 -9.36500 -8.48557 -5.97463 1.35735 1.41256 1.55586 1.60443 1.70532 1.99452 2.02543 2.28963 2.35390 2.98302 3.18586 3.50870 3.57967 3.58935 3.73221 3.84083 3.96034 4.07387 4.14228 4.28611 4.36432 4.42003 4.43845 4.46326 4.48605 4.55992 4.57182 4.65492 4.76376 4.80214 4.81388 4.89332 4.95494 4.99690 5.03678 5.07580 5.18789 5.38614 5.39675 5.53170 5.75166 5.84733 6.05909 6.35549 6.38139 6.49070 6.57738 7.10589 7.17241 7.27198 7.53607 8.08721 8.69066 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.001707 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.439731 B =16399.138167 C =17547.792233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.615 5.615 3 C 0.122 3.878 4 C 0.058 3.942 5 N -0.685 5.685 6 C 0.069 3.931 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.335 4.335 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.269 1.269 18 C 0.498 3.502 19 O -0.581 6.581 20 C -0.120 4.120 21 C -0.088 4.088 22 H 0.069 0.931 23 C -0.108 4.108 24 C -0.132 4.132 25 C 0.508 3.492 26 O -0.619 6.619 27 N -0.715 5.715 28 C 0.106 3.894 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.349 0.651 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.396 0.604 48 H 0.081 0.919 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.781 -22.457 10.914 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.347 5.347 3 C -0.002 4.002 4 C -0.072 4.072 5 N -0.318 5.318 6 C -0.064 4.064 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.194 1.194 18 C 0.289 3.711 19 O -0.461 6.461 20 C -0.160 4.160 21 C -0.107 4.107 22 H 0.087 0.913 23 C -0.145 4.145 24 C -0.171 4.171 25 C 0.297 3.703 26 O -0.503 6.503 27 N -0.363 5.363 28 C -0.017 4.017 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.168 0.832 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.129 0.871 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.230 0.770 48 H 0.099 0.901 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.194 -22.821 11.553 31.389 hybrid contribution 0.482 1.251 -1.274 1.850 sum -17.712 -21.570 10.278 29.742 Atomic orbital electron populations 1.22163 0.76537 1.05104 1.03577 1.47968 1.08665 1.05026 1.73080 1.21187 0.97716 0.85707 0.95634 1.22209 0.96278 0.90732 0.97975 1.59874 1.52888 1.06296 1.12783 1.21482 0.99548 0.93787 0.91539 1.20857 0.84610 0.88247 0.83849 1.90493 1.60775 1.68698 1.30965 1.41934 1.50338 1.21174 1.07535 1.19719 1.33098 0.99394 0.94206 0.90287 1.26062 0.98411 1.02883 0.93965 1.69676 1.47258 1.41221 0.97935 0.84853 0.77920 0.77164 0.78280 1.19801 1.19724 1.19379 1.21552 0.87867 0.86795 0.74922 1.90728 1.16336 1.87883 1.51150 1.21773 0.98376 0.87965 1.07852 1.21210 0.97065 0.95383 0.97067 0.91265 1.21738 0.96909 0.90438 1.05424 1.21684 0.94984 1.02861 0.97602 1.21011 0.85503 0.81440 0.82369 1.90732 1.51867 1.38196 1.69470 1.45606 1.34744 1.13383 1.42568 1.21738 0.95677 0.85454 0.98875 0.90782 0.90481 0.88062 0.88756 0.91971 0.92403 0.93230 0.83228 0.88583 0.91036 0.76952 0.91260 0.85388 0.84873 0.87083 0.89487 0.87508 0.87000 0.76965 0.90072 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 10.24 127.77 1.31 1.54 16 2 N -0.61 -7.97 2.87 -846.77 -2.43 -10.41 16 3 C 0.12 2.36 5.67 86.38 0.49 2.85 16 4 C 0.06 1.32 6.01 86.30 0.52 1.84 16 5 N -0.68 -21.54 6.12 -517.95 -3.17 -24.72 16 6 C 0.07 2.38 6.17 85.56 0.53 2.91 16 7 C 0.44 21.01 7.82 87.66 0.69 21.70 16 8 O -0.62 -34.89 15.78 -3.09 -0.05 -34.94 16 9 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 10 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 13 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 14 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 C 0.50 7.59 7.43 87.66 0.65 8.24 16 19 O -0.58 -15.02 13.64 -3.02 -0.04 -15.07 16 20 C -0.12 -0.56 3.73 29.85 0.11 -0.44 16 21 C -0.09 -0.77 1.89 -10.70 -0.02 -0.79 16 22 H 0.07 0.95 7.93 -2.39 -0.02 0.93 16 23 C -0.11 -0.42 5.33 30.73 0.16 -0.26 16 24 C -0.13 -1.35 6.03 29.70 0.18 -1.17 16 25 C 0.51 10.13 7.71 87.71 0.68 10.81 16 26 O -0.62 -18.52 17.78 -3.03 -0.05 -18.58 16 27 N -0.71 -12.40 5.45 -467.32 -2.55 -14.94 16 28 C 0.11 1.42 6.12 86.49 0.53 1.95 16 29 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.08 0.27 8.07 -2.39 -0.02 0.25 16 31 H 0.10 -0.19 6.44 -2.39 -0.02 -0.21 16 32 H 0.09 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.06 1.65 7.42 -2.39 -0.02 1.63 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.35 10.89 8.43 -89.70 -0.76 10.14 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.13 -0.10 7.36 -2.39 -0.02 -0.11 16 42 H 0.13 -0.14 8.11 -2.39 -0.02 -0.16 16 43 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.09 0.17 8.13 -2.38 -0.02 0.15 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.40 7.17 8.80 -92.71 -0.82 6.36 16 48 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 49 H 0.07 1.40 6.23 -2.39 -0.01 1.39 16 Total: -1.00 -85.49 401.77 -1.82 -87.31 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -1.31 Total: 36.38 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 7.10 Total: 30.55 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -9.49 Total: -130.80 kcal Atomic # 8 Polarization: -68.44 SS G_CDS: -0.14 Total: -68.58 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -85.49 -1.82 -87.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753197168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.054 kcal (2) G-P(sol) polarization free energy of solvation -85.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds