Wall clock time and date at job start Sat Apr 11 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99537 * 2 1 4 4 C 1.50698 * 120.00189 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46784 * 95.00082 * 4 2 1 6 6 N 1.46911 * 109.46868 * 180.02562 * 5 4 2 7 7 C 1.46903 * 110.99570 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46491 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47001 * 179.97438 * 8 7 6 10 10 C 1.53346 * 109.41904 * 295.13027 * 9 8 7 11 11 C 1.53195 * 109.14901 * 178.67276 * 10 9 8 12 12 N 1.46919 * 108.89273 * 54.57640 * 11 10 9 13 13 C 1.34778 * 120.63255 * 126.34238 * 12 11 10 14 14 O 1.21279 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00023 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00170 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47523 * 60.00095 * 21 19 17 23 23 H 1.48500 * 109.47094 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47100 * 300.00003 * 21 19 17 25 25 C 1.46933 * 118.74003 * 306.32349 * 12 11 10 26 26 C 1.53034 * 109.46014 * 174.99893 * 9 8 7 27 27 H 1.08003 * 119.99554 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00343 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47065 * 269.99712 * 3 2 1 30 30 H 1.08996 * 109.47485 * 29.99990 * 3 2 1 31 31 H 1.08995 * 109.47435 * 150.00111 * 3 2 1 32 32 H 1.08998 * 109.47185 * 334.99939 * 4 2 1 33 33 H 1.08999 * 109.46913 * 215.00006 * 4 2 1 34 34 H 1.08998 * 109.47376 * 59.99974 * 5 4 2 35 35 H 1.08999 * 109.47334 * 299.99667 * 5 4 2 36 36 H 1.00894 * 110.99631 * 303.95374 * 6 5 4 37 37 H 1.08991 * 109.47076 * 59.99941 * 7 6 5 38 38 H 1.08999 * 109.46965 * 299.99471 * 7 6 5 39 39 H 1.09001 * 109.47533 * 60.00207 * 8 7 6 40 40 H 1.08997 * 109.47446 * 299.99874 * 8 7 6 41 41 H 1.09001 * 109.45799 * 55.03056 * 9 8 7 42 42 H 1.08997 * 109.68637 * 58.70485 * 10 9 8 43 43 H 1.09002 * 109.47277 * 298.50741 * 10 9 8 44 44 H 1.09002 * 109.58720 * 294.71670 * 11 10 9 45 45 H 1.08996 * 109.58651 * 174.43567 * 11 10 9 46 46 H 1.09001 * 109.47488 * 299.99559 * 15 13 12 47 47 H 1.09001 * 109.47269 * 59.99982 * 15 13 12 48 48 H 0.96996 * 119.99581 * 180.02562 * 20 19 17 49 49 H 1.08994 * 109.58580 * 173.39910 * 25 12 11 50 50 H 1.09006 * 109.57831 * 293.67403 * 25 12 11 51 51 H 1.08994 * 109.50232 * 61.43679 * 26 9 8 52 52 H 1.09007 * 109.52628 * 301.35340 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4275 -1.6844 -1.4363 6 7 3.1615 -2.9570 -1.4358 7 6 3.5277 -3.3539 -2.8019 8 6 4.2894 -4.6802 -2.7607 9 6 4.6703 -5.0941 -4.1836 10 6 3.3973 -5.3783 -4.9899 11 6 3.7843 -5.7598 -6.4222 12 7 4.7340 -6.8798 -6.3761 13 6 4.4980 -8.0095 -7.0723 14 8 3.4936 -8.1087 -7.7447 15 6 5.4821 -9.1493 -7.0151 16 16 4.8873 -10.5123 -8.0469 17 6 6.1906 -11.6726 -7.8024 18 1 7.0240 -11.4217 -7.1629 19 6 6.1457 -12.9093 -8.4309 20 7 5.1297 -13.2152 -9.2100 21 14 7.5271 -14.1396 -8.1712 22 1 7.6272 -14.4741 -6.7278 23 1 7.2429 -15.3740 -8.9463 24 1 8.8091 -13.5490 -8.6325 25 6 5.9463 -6.7449 -5.5568 26 6 5.5382 -6.3535 -4.1331 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4744 2.0648 0.5138 31 1 3.0159 1.1749 0.5138 32 1 1.4387 -2.0852 0.4352 33 1 2.9743 -1.1985 0.5900 34 1 3.0523 -0.9042 -1.8709 35 1 1.5168 -1.7910 -2.0257 36 1 3.9766 -2.9039 -0.8435 37 1 4.1604 -2.5857 -3.2463 38 1 2.6244 -3.4718 -3.4005 39 1 3.6571 -5.4488 -2.3161 40 1 5.1927 -4.5620 -2.1622 41 1 5.2281 -4.2875 -4.6593 42 1 2.7677 -4.4887 -5.0078 43 1 2.8515 -6.2016 -4.5290 44 1 4.2498 -4.9060 -6.9146 45 1 2.8933 -6.0588 -6.9742 46 1 6.4512 -8.8114 -7.3823 47 1 5.5829 -9.4911 -5.9850 48 1 5.0982 -14.0796 -9.6488 49 1 6.4807 -7.6946 -5.5358 50 1 6.5893 -5.9732 -5.9803 51 1 4.9724 -7.1675 -3.6802 52 1 6.4313 -6.1569 -3.5398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753564621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:11 Heat of formation + Delta-G solvation = -65.028045 kcal Electronic energy + Delta-G solvation = -26282.070053 eV Core-core repulsion = 22599.040838 eV Total energy + Delta-G solvation = -3683.029215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.18998 -39.08554 -38.16528 -36.50021 -34.73999 -34.58128 -32.54482 -31.50767 -30.28360 -28.60711 -28.02595 -27.64882 -25.46780 -24.22748 -23.26039 -22.70719 -21.38868 -20.31622 -19.48970 -19.23099 -18.13610 -17.13262 -16.94239 -16.86534 -16.62046 -16.19321 -15.90365 -15.61164 -15.49800 -15.28712 -15.06716 -14.80960 -14.53467 -14.45037 -14.28544 -14.09759 -13.93753 -13.72178 -13.45184 -13.17480 -13.15056 -12.86452 -12.77693 -12.64522 -12.60939 -12.50113 -12.19209 -12.18749 -11.93947 -11.80500 -11.72105 -11.61388 -11.33369 -11.20954 -11.12701 -10.80321 -10.26812 -9.93478 -9.65772 -9.35891 -8.68074 -8.34221 -6.13242 1.25649 1.31145 1.44343 1.46088 1.55825 1.57369 2.12923 2.27844 2.99834 3.16077 3.25861 3.65097 3.76820 3.86421 3.92960 3.98228 4.08981 4.13806 4.22190 4.24258 4.31152 4.32731 4.38168 4.43868 4.46204 4.55615 4.62421 4.65424 4.68777 4.71366 4.81505 4.85437 4.86457 4.92103 4.99399 5.03453 5.08242 5.10331 5.11945 5.14406 5.16364 5.25865 5.33799 5.41241 5.56581 5.62346 5.75735 5.97294 6.07904 6.19566 6.30964 6.50013 7.06588 7.14912 8.74911 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.001493 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.385272 B =18755.678371 C =19091.280939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.120 4.120 4 C -0.080 4.080 5 C 0.070 3.930 6 N -0.701 5.701 7 C 0.060 3.940 8 C -0.102 4.102 9 C -0.077 4.077 10 C -0.121 4.121 11 C 0.108 3.892 12 N -0.606 5.606 13 C 0.530 3.470 14 O -0.570 6.570 15 C -0.122 4.122 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.261 1.261 25 C 0.098 3.902 26 C -0.124 4.124 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.346 0.654 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.054 0.946 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 29.373 20.787 35.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.133 4.133 3 C -0.177 4.177 4 C -0.118 4.118 5 C -0.059 4.059 6 N -0.333 5.333 7 C -0.068 4.068 8 C -0.140 4.140 9 C -0.096 4.096 10 C -0.159 4.159 11 C -0.015 4.015 12 N -0.341 5.341 13 C 0.318 3.682 14 O -0.449 6.449 15 C -0.273 4.273 16 S 0.073 5.927 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.023 4.023 26 C -0.162 4.162 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.165 0.835 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.110 0.890 51 H 0.073 0.927 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.156 28.746 19.705 34.870 hybrid contribution 1.951 -0.359 0.263 2.002 sum 0.795 28.387 19.968 34.716 Atomic orbital electron populations 1.23851 0.95539 1.02242 1.02371 1.21865 0.95575 0.96113 0.99749 1.20898 1.00325 0.94052 1.02424 1.20621 1.00454 0.94206 0.96497 1.21831 0.98001 0.89500 0.96580 1.60441 1.29498 1.31883 1.11461 1.21991 0.99138 0.96226 0.89489 1.21486 1.00223 0.96462 0.95827 1.21128 0.95291 0.97610 0.95603 1.22027 0.98441 1.01785 0.93673 1.21700 0.93050 0.88219 0.98481 1.48145 1.24300 1.14508 1.47099 1.20160 0.85902 0.83444 0.78716 1.90665 1.30044 1.81481 1.42753 1.23362 1.01814 0.97154 1.05017 1.85604 1.33853 1.11236 1.62017 1.23163 1.08664 1.02679 1.34949 0.89871 1.26137 0.99446 0.99654 0.93810 1.70183 1.31809 1.23192 1.29628 0.85000 0.77563 0.76504 0.78905 1.18612 1.20392 1.18540 1.22060 0.85533 1.03609 0.91147 1.21949 1.01176 0.97796 0.95304 0.88677 0.87821 0.91240 0.91414 0.91320 0.91357 0.90585 0.94813 0.92080 0.83512 0.94505 0.91590 0.92434 0.90596 0.89410 0.89092 0.93289 0.89653 0.91814 0.87440 0.87635 0.91988 0.89623 0.88978 0.92747 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 13.89 67.77 0.94 -1.30 16 2 C -0.13 -1.40 5.31 -16.50 -0.09 -1.48 16 3 C -0.12 -0.94 10.03 71.24 0.71 -0.22 16 4 C -0.08 -0.83 5.64 29.85 0.17 -0.67 16 5 C 0.07 0.79 5.67 86.30 0.49 1.28 16 6 N -0.70 -8.27 6.50 -513.87 -3.34 -11.61 16 7 C 0.06 0.69 5.44 86.30 0.47 1.16 16 8 C -0.10 -1.17 4.94 30.60 0.15 -1.01 16 9 C -0.08 -0.99 2.15 -10.66 -0.02 -1.01 16 10 C -0.12 -2.13 5.16 30.78 0.16 -1.97 16 11 C 0.11 2.53 6.42 86.36 0.55 3.08 16 12 N -0.61 -16.84 2.97 -818.91 -2.43 -19.28 16 13 C 0.53 20.88 7.72 87.66 0.68 21.56 16 14 O -0.57 -27.87 15.27 -3.03 -0.05 -27.91 16 15 C -0.12 -5.05 4.50 71.24 0.32 -4.73 16 16 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 17 C -0.55 -31.53 9.50 67.96 0.65 -30.89 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 21 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 C 0.10 1.87 6.34 86.36 0.55 2.42 16 26 C -0.12 -1.82 5.36 30.67 0.16 -1.65 16 27 H 0.09 1.08 7.99 -2.91 -0.02 1.06 16 28 H 0.10 0.96 8.04 -2.91 -0.02 0.93 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.46 8.06 -2.39 -0.02 0.44 16 31 H 0.07 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.07 0.85 7.99 -2.39 -0.02 0.83 16 33 H 0.08 0.66 8.10 -2.39 -0.02 0.64 16 34 H 0.03 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.35 3.19 8.73 -89.70 -0.78 2.41 16 37 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.07 0.88 6.53 -2.39 -0.02 0.87 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.30 6.52 -2.39 -0.02 1.29 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.89 7.00 -2.39 -0.02 1.87 16 46 H 0.11 3.99 7.94 -2.39 -0.02 3.98 16 47 H 0.11 3.97 7.69 -2.40 -0.02 3.95 16 48 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.09 1.72 5.93 -2.39 -0.01 1.70 16 50 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 51 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -76.62 425.41 1.78 -74.85 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.09 Total: 18.63 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 6.36 Total: -14.16 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -5.49 Total: -87.16 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -76.62 1.78 -74.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753564621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.820 kcal (2) G-P(sol) polarization free energy of solvation -76.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds