Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.46807 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46906 * 120.00270 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00008 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64992 * 359.69048 * 13 11 10 15 15 C 1.54320 * 107.27206 * 180.96769 * 14 13 11 16 16 C 1.55157 * 102.86673 * 22.52802 * 15 14 13 17 17 H 1.09003 * 111.00214 * 82.37433 * 16 15 14 18 18 C 1.52996 * 111.00528 * 206.22821 * 16 15 14 19 19 C 1.53002 * 109.46862 * 178.64874 * 18 16 15 20 20 N 1.46903 * 109.46660 * 179.97438 * 19 18 16 21 21 C 1.46900 * 110.99662 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.47214 * 179.97438 * 21 20 19 23 23 C 1.54266 * 110.03171 * 292.17416 * 22 21 20 24 24 C 1.54895 * 104.19250 * 217.10030 * 23 22 21 25 25 C 1.54896 * 102.74669 * 37.94285 * 24 23 22 26 26 C 1.53869 * 110.03334 * 175.00054 * 22 21 20 27 27 C 1.47422 * 125.64362 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 30 30 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 31 31 H 1.08996 * 109.88053 * 300.51294 * 14 13 11 32 32 H 1.09002 * 109.88106 * 61.68209 * 14 13 11 33 33 H 1.08996 * 110.92585 * 264.10675 * 15 14 13 34 34 H 1.09005 * 110.58558 * 140.78608 * 15 14 13 35 35 H 1.09001 * 109.47140 * 298.64581 * 18 16 15 36 36 H 1.09000 * 109.46831 * 58.64688 * 18 16 15 37 37 H 1.08994 * 109.47166 * 299.99499 * 19 18 16 38 38 H 1.09000 * 109.47025 * 60.00273 * 19 18 16 39 39 H 1.00898 * 111.00091 * 56.04721 * 20 19 18 40 40 H 1.08998 * 109.47856 * 300.00276 * 21 20 19 41 41 H 1.09007 * 109.47017 * 60.00388 * 21 20 19 42 42 H 1.09003 * 110.01318 * 53.61319 * 22 21 20 43 43 H 1.08990 * 110.49081 * 335.78018 * 23 22 21 44 44 H 1.09007 * 110.48530 * 98.42735 * 23 22 21 45 45 H 1.09002 * 110.75461 * 279.63065 * 24 23 22 46 46 H 1.08997 * 110.75609 * 156.25760 * 24 23 22 47 47 H 1.08997 * 110.48379 * 203.37718 * 25 24 23 48 48 H 1.08997 * 110.48123 * 80.73511 * 25 24 23 49 49 H 1.08996 * 110.03675 * 238.57143 * 26 22 21 50 50 H 1.08999 * 110.03443 * 359.96010 * 26 22 21 51 51 H 1.09006 * 110.36753 * 274.67009 * 27 13 11 52 52 H 1.09003 * 110.37314 * 36.99580 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.3110 -6.2451 -0.0051 15 6 4.8664 -7.6847 -0.0272 16 6 3.6845 -8.5020 -0.6125 17 1 3.6698 -8.4431 -1.7008 18 6 3.7397 -9.9578 -0.1450 19 6 2.5424 -10.7218 -0.7140 20 7 2.5958 -12.1197 -0.2656 21 6 1.4587 -12.8856 -0.7933 22 6 1.5489 -14.3333 -0.3065 23 6 2.7606 -15.0342 -0.9548 24 6 2.2683 -16.4795 -1.2160 25 6 0.7964 -16.2662 -1.6486 26 6 0.3001 -15.1165 -0.7476 27 6 2.4655 -7.7679 0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7314 0.8906 31 1 4.6431 -5.7040 -0.8911 32 1 4.6516 -5.7323 0.8945 33 1 5.1087 -8.0241 0.9798 34 1 5.7390 -7.7490 -0.6773 35 1 4.6638 -10.4172 -0.4956 36 1 3.7077 -9.9910 0.9440 37 1 1.6183 -10.2624 -0.3634 38 1 2.5744 -10.6885 -1.8030 39 1 2.6327 -12.1753 0.7412 40 1 0.5272 -12.4413 -0.4427 41 1 1.4825 -12.8669 -1.8830 42 1 1.6400 -14.3567 0.7794 43 1 3.0268 -14.5466 -1.8925 44 1 3.6097 -15.0382 -0.2712 45 1 2.3207 -17.0759 -0.3052 46 1 2.8429 -16.9444 -2.0171 47 1 0.2121 -17.1691 -1.4715 48 1 0.7454 -15.9774 -2.6984 49 1 -0.2144 -15.5208 0.1241 50 1 -0.3706 -14.4651 -1.3079 51 1 2.2873 -8.1131 1.0188 52 1 1.5795 -7.9251 -0.6149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754904141.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -85.885064 kcal Electronic energy + Delta-G solvation = -26273.548163 eV Core-core repulsion = 22589.614520 eV Total energy + Delta-G solvation = -3683.933643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.10665 -39.52744 -38.81517 -36.81803 -34.60356 -34.17297 -31.73162 -30.85430 -30.02491 -29.47635 -27.87509 -27.47123 -25.06723 -24.03686 -22.77001 -21.48983 -21.25607 -20.74201 -20.39234 -19.57607 -18.07816 -17.54372 -16.94243 -16.89504 -16.80059 -16.60255 -16.08246 -15.71320 -15.51903 -15.29613 -14.93675 -14.81375 -14.53082 -14.35094 -14.15258 -13.88631 -13.80448 -13.54613 -13.22208 -13.18757 -13.13440 -12.87306 -12.73430 -12.64441 -12.28202 -12.08745 -11.95685 -11.83159 -11.82197 -11.75315 -11.64840 -11.52786 -11.44972 -11.34037 -11.20481 -11.14130 -11.00381 -10.31688 -9.71909 -9.36275 -8.70887 -8.35887 -6.15515 1.22333 1.43578 1.43950 1.52113 1.54537 2.08720 2.26159 2.98152 3.09740 3.23502 3.49071 3.65393 3.76257 3.78608 3.86996 3.87576 3.93296 4.16257 4.25564 4.30435 4.34143 4.38396 4.40803 4.47026 4.54030 4.58124 4.63241 4.66317 4.68053 4.76401 4.78185 4.84785 4.88354 4.91313 4.95817 4.97059 5.07143 5.08964 5.14494 5.15983 5.26370 5.29229 5.36758 5.39579 5.42255 5.45946 5.49621 5.57937 6.06186 6.17944 6.36933 6.47907 7.04747 7.07676 8.73268 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.001502 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.456476 B =18637.977953 C =19412.826470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.278 1.278 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.543 3.457 12 O -0.571 6.571 13 N -0.619 5.619 14 C 0.087 3.913 15 C -0.112 4.112 16 C -0.088 4.088 17 H 0.087 0.913 18 C -0.090 4.090 19 C 0.056 3.944 20 N -0.687 5.687 21 C 0.067 3.933 22 C -0.087 4.087 23 C -0.103 4.103 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.123 4.123 27 C 0.106 3.894 28 H 0.272 0.728 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.018 0.982 38 H 0.067 0.933 39 H 0.344 0.656 40 H 0.021 0.979 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.068 0.932 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.016 -31.966 -0.998 34.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.203 1.203 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.331 3.669 12 O -0.450 6.450 13 N -0.353 5.353 14 C -0.035 4.035 15 C -0.150 4.150 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.129 4.129 19 C -0.073 4.073 20 N -0.318 5.318 21 C -0.062 4.062 22 C -0.106 4.106 23 C -0.140 4.140 24 C -0.166 4.166 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.017 4.017 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.162 0.838 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.479 -32.297 -1.498 34.309 hybrid contribution 0.256 1.836 0.505 1.922 sum 11.736 -30.460 -0.993 32.658 Atomic orbital electron populations 1.70185 1.08034 1.28734 1.47813 1.26153 0.95971 1.03348 0.93571 0.84982 0.77802 0.75513 0.79561 1.20308 1.18562 1.18584 1.23159 0.95332 0.91833 1.59242 0.89887 1.85589 1.10571 0.99338 1.97054 1.23297 1.03383 0.93983 1.06324 1.19819 0.85478 0.86140 0.75441 1.90676 1.17169 1.85845 1.51276 1.48507 1.08089 1.05783 1.72957 1.22400 0.77763 1.00389 1.02907 1.22706 0.97877 0.90838 1.03535 1.22319 0.93085 0.94695 1.00664 0.89512 1.21379 0.98961 0.91490 1.01025 1.21991 0.97146 0.87775 1.00421 1.60496 1.44134 1.11061 1.16072 1.22084 0.91020 0.93313 0.99815 1.21751 0.95422 0.93302 1.00118 1.22240 0.96883 0.94570 1.00346 1.22558 0.95814 0.96988 1.01229 1.22361 0.96423 0.98178 0.99307 1.22201 0.97052 0.97159 0.99718 1.22462 0.98949 0.79357 1.00890 0.91942 0.87601 0.87582 0.90545 0.90485 0.88903 0.87338 0.89144 0.90959 0.96338 0.91473 0.83783 0.96078 0.91624 0.91053 0.92201 0.91714 0.91392 0.91392 0.91305 0.91910 0.91519 0.92107 0.91386 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.78 16 4 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.78 9.50 67.96 0.65 -31.13 16 8 H 0.08 4.45 7.80 -2.92 -0.02 4.43 16 9 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 10 C -0.12 -5.00 5.35 71.24 0.38 -4.62 16 11 C 0.54 21.96 7.87 87.66 0.69 22.65 16 12 O -0.57 -28.49 16.12 -3.01 -0.05 -28.54 16 13 N -0.62 -17.85 3.33 -811.75 -2.70 -20.55 16 14 C 0.09 1.67 6.48 86.73 0.56 2.23 16 15 C -0.11 -1.30 6.42 31.78 0.20 -1.10 16 16 C -0.09 -1.26 3.07 -9.39 -0.03 -1.29 16 17 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 18 C -0.09 -0.99 4.99 30.59 0.15 -0.84 16 19 C 0.06 0.78 5.53 86.30 0.48 1.26 16 20 N -0.69 -8.78 6.32 -513.87 -3.25 -12.03 16 21 C 0.07 0.90 4.74 86.31 0.41 1.31 16 22 C -0.09 -1.00 3.09 -10.07 -0.03 -1.03 16 23 C -0.10 -1.16 6.19 31.67 0.20 -0.97 16 24 C -0.13 -1.26 6.91 31.89 0.22 -1.04 16 25 C -0.13 -1.26 6.83 31.67 0.22 -1.05 16 26 C -0.12 -1.36 6.46 31.32 0.20 -1.15 16 27 C 0.11 2.48 5.57 86.86 0.48 2.97 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 30 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 0.87 8.04 -2.39 -0.02 0.85 16 34 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.73 8.10 -2.39 -0.02 0.72 16 37 H 0.02 0.31 7.46 -2.39 -0.02 0.29 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.34 3.83 8.73 -89.70 -0.78 3.04 16 40 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.07 0.97 8.00 -2.38 -0.02 0.95 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.79 7.76 -2.39 -0.02 0.77 16 44 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 0.71 7.67 -2.39 -0.02 0.69 16 51 H 0.07 1.54 8.00 -2.38 -0.02 1.53 16 52 H 0.05 1.51 7.96 -2.39 -0.02 1.49 16 Total: -1.00 -76.66 423.03 0.48 -76.18 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.08 Total: 17.88 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.25 Total: -12.52 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -5.66 Total: -88.88 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.54 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -76.66 0.48 -76.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754904141.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.705 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds