Wall clock time and date at job start Sat Apr 11 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46646 * 2 1 4 4 N 1.46494 * 109.47699 * 119.99955 * 2 1 3 5 5 C 1.46494 * 120.00182 * 117.80888 * 4 2 1 6 6 C 1.50697 * 109.47325 * 83.90362 * 5 4 2 7 7 H 1.08003 * 119.99900 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00319 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99958 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47225 * 89.99749 * 10 8 6 12 12 H 1.48504 * 109.47059 * 210.00076 * 10 8 6 13 13 H 1.48499 * 109.46851 * 329.99956 * 10 8 6 14 14 C 1.34781 * 119.99837 * 297.81488 * 4 2 1 15 15 O 1.21281 * 120.00229 * 4.69621 * 14 4 2 16 16 C 1.50703 * 120.00061 * 184.70021 * 14 4 2 17 17 C 1.53126 * 109.51890 * 285.79007 * 16 14 4 18 18 C 1.53044 * 109.27313 * 182.50596 * 17 16 14 19 19 N 1.46843 * 109.57778 * 59.07778 * 18 17 16 20 20 C 1.46901 * 111.00041 * 174.19417 * 19 18 17 21 21 H 1.08994 * 109.59899 * 64.53674 * 20 19 18 22 22 C 1.52940 * 109.60332 * 304.21307 * 20 19 18 23 23 C 1.53706 * 112.49254 * 209.97030 * 22 20 19 24 24 S 1.83394 * 104.96801 * 2.82266 * 23 22 20 25 25 C 1.55156 * 109.60302 * 184.67756 * 20 19 18 26 26 C 1.46844 * 111.20210 * 298.29252 * 19 18 17 27 27 C 1.53042 * 109.52238 * 61.74035 * 26 19 18 28 28 H 1.09001 * 109.47735 * 56.99768 * 1 2 3 29 29 H 1.09003 * 109.47308 * 176.99646 * 1 2 3 30 30 H 1.08997 * 109.47356 * 296.99078 * 1 2 3 31 31 H 1.09002 * 109.46888 * 240.00317 * 2 1 3 32 32 H 1.08994 * 109.47328 * 64.49858 * 3 2 1 33 33 H 1.08998 * 109.46962 * 184.50124 * 3 2 1 34 34 H 1.09001 * 109.47006 * 304.49858 * 3 2 1 35 35 H 1.09004 * 109.47020 * 203.90429 * 5 4 2 36 36 H 1.09004 * 109.47362 * 323.90265 * 5 4 2 37 37 H 0.97001 * 120.00329 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.52304 * 45.91052 * 16 14 4 39 39 H 1.09003 * 109.49960 * 302.38032 * 17 16 14 40 40 H 1.09001 * 109.50396 * 62.49619 * 17 16 14 41 41 H 1.09004 * 109.40551 * 299.06311 * 18 17 16 42 42 H 1.08998 * 109.46240 * 179.13146 * 18 17 16 43 43 H 1.09000 * 108.88904 * 330.76236 * 22 20 19 44 44 H 1.08995 * 108.88729 * 89.31440 * 22 20 19 45 45 H 1.08995 * 110.34657 * 121.69762 * 23 22 20 46 46 H 1.08998 * 110.34299 * 243.84794 * 23 22 20 47 47 H 1.09000 * 111.12899 * 279.27581 * 25 20 19 48 48 H 1.08997 * 111.13548 * 43.45793 * 25 20 19 49 49 H 1.09000 * 109.46359 * 301.72358 * 26 19 18 50 50 H 1.08999 * 109.46401 * 181.75556 * 26 19 18 51 51 H 1.09003 * 109.50139 * 180.87929 * 27 26 19 52 52 H 1.08997 * 109.50169 * 60.76282 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.8206 -1.9090 1.0622 6 6 4.2634 -1.5380 0.8348 7 1 4.5537 -0.4986 0.7936 8 6 5.2129 -2.5256 0.6792 9 7 4.8596 -3.7913 0.7298 10 14 7.0015 -2.0657 0.3980 11 1 7.6946 -1.9508 1.7062 12 1 7.6597 -3.1155 -0.4205 13 1 7.0718 -0.7652 -0.3153 14 6 1.7296 -0.2049 2.4197 15 8 0.9955 0.7537 2.5340 16 6 2.3190 -0.8530 3.6460 17 6 1.6087 -2.1829 3.9133 18 6 2.1683 -2.8059 5.1944 19 7 1.9637 -1.8848 6.3195 20 6 2.3642 -2.5069 7.5886 21 1 3.4363 -2.7031 7.5773 22 6 1.6041 -3.8203 7.7787 23 6 1.3665 -4.1531 9.2603 24 16 2.0563 -2.7261 10.1829 25 6 2.0257 -1.5537 8.7652 26 6 2.6766 -0.6189 6.1059 27 6 2.1311 0.0702 4.8530 28 1 -0.3634 0.5597 -0.8618 29 1 -0.3634 -1.0263 -0.0538 30 1 -0.3634 0.4664 0.9157 31 1 1.8933 -0.5138 -0.8900 32 1 1.7438 1.9326 0.9275 33 1 3.1268 1.4437 -0.0807 34 1 1.6121 1.9791 -0.8470 35 1 2.7370 -2.5010 1.9736 36 1 2.4576 -2.4919 0.2157 37 1 5.5275 -4.4861 0.6200 38 1 3.3822 -1.0334 3.4873 39 1 0.5396 -2.0069 4.0322 40 1 1.7757 -2.8596 3.0753 41 1 3.2344 -2.9953 5.0692 42 1 1.6539 -3.7455 5.3960 43 1 0.6404 -3.7464 7.2748 44 1 2.1775 -4.6286 7.3251 45 1 0.2997 -4.2534 9.4599 46 1 1.8897 -5.0701 9.5313 47 1 2.7871 -0.7818 8.8771 48 1 1.0367 -1.1125 8.6415 49 1 3.7404 -0.8185 5.9766 50 1 2.5314 0.0299 6.9696 51 1 2.6712 1.0022 4.6860 52 1 1.0705 0.2825 4.9872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565182619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:59 Heat of formation + Delta-G solvation = -40.579923 kcal Electronic energy + Delta-G solvation = -29462.024634 eV Core-core repulsion = 25780.055569 eV Total energy + Delta-G solvation = -3681.969065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.06238 -38.77766 -35.85874 -35.19559 -33.28398 -32.27519 -31.03835 -30.82723 -28.96242 -27.04568 -26.62250 -25.53311 -24.14802 -22.96963 -22.40053 -21.57984 -20.18424 -19.56618 -18.06268 -17.06877 -16.66299 -16.36487 -16.03212 -15.38459 -15.15406 -14.69765 -14.51128 -14.40920 -14.26645 -13.87103 -13.57520 -13.47058 -13.26862 -12.87778 -12.79716 -12.54070 -12.29551 -12.24531 -12.14903 -11.89779 -11.76476 -11.50439 -11.45628 -11.33374 -11.11575 -11.03328 -11.00680 -10.92391 -10.77053 -10.68220 -10.38343 -10.26764 -10.15735 -10.04321 -9.99774 -9.63124 -8.70936 -8.52313 -8.34089 -7.91958 -7.67282 -6.22350 -4.28907 1.63839 2.09506 3.17948 3.25967 3.28663 3.43227 3.79738 3.94118 4.28490 4.29503 4.59412 4.71360 4.86842 4.97084 4.98887 5.10064 5.15299 5.22614 5.29684 5.42346 5.43301 5.50318 5.52083 5.60188 5.62403 5.72181 5.72387 5.80895 5.84466 5.86858 5.97904 6.02288 6.11653 6.12681 6.18877 6.23398 6.30046 6.38152 6.45839 6.46922 6.69757 6.80600 6.81515 6.89801 7.06135 7.09576 7.21809 7.61890 7.73008 8.03093 8.41067 8.77531 9.07168 9.39020 10.83914 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.003417 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.404259 B = 8191.205144 C = 9690.373548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 C -0.164 4.164 4 N -0.591 5.591 5 C 0.226 3.774 6 C -0.535 4.535 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.524 3.476 15 O -0.570 6.570 16 C -0.106 4.106 17 C -0.108 4.108 18 C 0.057 3.943 19 N -0.529 5.529 20 C 0.083 3.917 21 H 0.056 0.944 22 C -0.127 4.127 23 C -0.063 4.063 24 S -0.304 6.304 25 C -0.056 4.056 26 C 0.055 3.945 27 C -0.092 4.092 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.067 0.933 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 0.547 11.080 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.321 5.321 5 C 0.107 3.893 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.312 3.688 15 O -0.451 6.451 16 C -0.127 4.127 17 C -0.146 4.146 18 C -0.071 4.071 19 N -0.255 5.255 20 C -0.028 4.028 21 H 0.074 0.926 22 C -0.166 4.166 23 C -0.212 4.212 24 S -0.079 6.079 25 C -0.204 4.204 26 C -0.073 4.073 27 C -0.130 4.130 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.751 1.046 12.269 14.042 hybrid contribution 1.805 -0.328 -1.562 2.409 sum -4.946 0.718 10.707 11.816 Atomic orbital electron populations 1.22211 0.96163 1.01292 1.02767 1.20788 0.93163 0.93107 0.88476 1.22145 1.01073 0.96543 1.02476 1.48304 1.51414 1.28119 1.04246 1.19708 0.89651 0.81104 0.98859 1.21508 0.92296 0.93306 1.50272 0.92170 1.24913 0.99053 0.94809 0.94928 1.69908 1.34388 0.99143 1.49533 0.86573 0.84683 0.78352 0.78351 1.20572 1.21074 1.19806 1.20347 0.80335 0.83351 0.84743 1.90515 1.38481 1.29160 1.86986 1.21307 1.02446 0.95937 0.93011 1.21713 0.99968 0.95812 0.97130 1.22136 0.99738 0.95164 0.90018 1.62129 1.57548 1.04761 1.01024 1.22499 0.98343 0.92265 0.89668 0.92557 1.22010 1.02777 0.97020 0.94795 1.23858 1.03742 0.97992 0.95559 1.87843 1.85516 1.12288 1.22234 1.24433 1.06076 0.98252 0.91669 1.22170 0.95741 0.90681 0.98724 1.21356 1.02667 0.97197 0.91794 0.92886 0.93342 0.90572 0.90001 0.90856 0.92714 0.93038 0.92942 0.95095 0.92578 0.87951 0.91394 0.89217 0.94022 0.90493 0.89406 0.90251 0.89085 0.88434 0.87844 0.88016 0.94532 0.90736 0.91435 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.19 37.16 0.34 -2.41 16 2 C 0.15 2.75 3.27 -67.93 -0.22 2.53 16 3 C -0.16 -2.90 9.15 37.16 0.34 -2.56 16 4 N -0.59 -11.97 2.41 -167.47 -0.40 -12.38 16 5 C 0.23 5.12 4.68 -5.20 -0.02 5.10 16 6 C -0.54 -13.40 9.19 -34.44 -0.32 -13.72 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.63 13.29 55.43 0.74 -22.89 16 10 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.52 10.29 6.32 -10.98 -0.07 10.22 16 15 O -0.57 -11.89 12.13 5.56 0.07 -11.82 16 16 C -0.11 -1.82 1.75 -91.65 -0.16 -1.98 16 17 C -0.11 -1.69 5.06 -26.64 -0.13 -1.83 16 18 C 0.06 0.77 5.20 -3.83 -0.02 0.75 16 19 N -0.53 -6.47 4.46 -225.36 -1.00 -7.47 16 20 C 0.08 0.88 2.31 -66.60 -0.15 0.73 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 C -0.13 -1.18 4.55 -26.39 -0.12 -1.30 16 23 C -0.06 -0.54 7.38 37.52 0.28 -0.27 16 24 S -0.30 -3.29 23.23 -107.50 -2.50 -5.78 16 25 C -0.06 -0.56 5.90 38.30 0.23 -0.33 16 26 C 0.05 0.69 5.28 -3.83 -0.02 0.67 16 27 C -0.09 -1.38 4.82 -26.65 -0.13 -1.51 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.38 6.10 -51.93 -0.32 1.07 16 31 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 32 H 0.07 1.40 6.05 -51.93 -0.31 1.08 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.18 3.98 -51.93 -0.21 0.98 16 36 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.10 1.98 7.49 -51.93 -0.39 1.59 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.55 5.48 -51.93 -0.28 1.26 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.92 6.41 -51.93 -0.33 0.59 16 43 H 0.09 0.84 7.64 -51.93 -0.40 0.45 16 44 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.10 0.97 7.56 -51.93 -0.39 0.58 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 51 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -26.84 398.73 -11.64 -38.48 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -9.24 Total: 5.11 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.28 Total: -4.34 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.67 Total: -42.74 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.82 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.50 Total: -5.78 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -26.84 -11.64 -38.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565182619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.102 kcal (2) G-P(sol) polarization free energy of solvation -26.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds