Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 O 1.42899 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.36055 * 116.99767 * 179.97438 * 4 3 2 6 6 C 1.38627 * 119.99343 * 0.02562 * 5 4 3 7 7 C 1.38141 * 120.04513 * 179.74544 * 6 5 4 8 8 C 1.38865 * 120.01652 * 0.51199 * 7 6 5 9 9 N 1.39932 * 120.01027 * 179.74468 * 8 7 6 10 10 C 1.46503 * 120.00343 * 359.72207 * 9 8 7 11 11 C 1.52993 * 109.47413 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46819 * 60.00643 * 11 10 9 13 13 O 1.42888 * 109.47603 * 300.00456 * 11 10 9 14 14 C 1.52999 * 109.47031 * 180.02562 * 11 10 9 15 15 N 1.46903 * 109.47066 * 182.16521 * 14 11 10 16 16 C 1.46904 * 110.99849 * 199.76749 * 15 14 11 17 17 C 1.46895 * 111.00391 * 75.81297 * 15 14 11 18 18 C 1.50700 * 109.47006 * 190.00120 * 17 15 14 19 19 H 1.07997 * 120.00041 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00066 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00435 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47302 * 89.99737 * 22 20 18 24 24 H 1.48498 * 109.47415 * 210.00291 * 22 20 18 25 25 H 1.48501 * 109.46855 * 330.00009 * 22 20 18 26 26 C 1.38843 * 119.97858 * 359.46771 * 8 7 6 27 27 C 1.38291 * 119.95478 * 0.27748 * 26 8 7 28 28 F 1.35106 * 120.00565 * 180.02562 * 27 26 8 29 29 H 1.08997 * 109.46640 * 60.00443 * 1 2 3 30 30 H 1.09000 * 109.46487 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47455 * 300.00343 * 1 2 3 32 32 H 1.08991 * 109.47241 * 240.00082 * 2 1 3 33 33 H 1.08997 * 109.46640 * 119.99557 * 2 1 3 34 34 H 1.08996 * 109.47325 * 59.99578 * 3 2 1 35 35 H 1.09003 * 109.46681 * 300.00070 * 3 2 1 36 36 H 1.08001 * 119.97457 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.99339 * 180.25905 * 7 6 5 38 38 H 0.97001 * 119.99995 * 179.72691 * 9 8 7 39 39 H 1.09000 * 109.46607 * 59.99929 * 10 9 8 40 40 H 1.09001 * 109.47071 * 300.00783 * 10 9 8 41 41 H 0.96705 * 114.00420 * 300.00136 * 13 11 10 42 42 H 1.08996 * 109.47434 * 62.16129 * 14 11 10 43 43 H 1.09005 * 109.47356 * 302.16016 * 14 11 10 44 44 H 1.08999 * 109.47114 * 291.00876 * 16 15 14 45 45 H 1.09008 * 109.47158 * 51.00884 * 16 15 14 46 46 H 1.08996 * 109.47159 * 171.00329 * 16 15 14 47 47 H 1.09001 * 109.46706 * 309.99859 * 17 15 14 48 48 H 1.08996 * 109.47032 * 69.99954 * 17 15 14 49 49 H 0.96993 * 120.00483 * 179.97438 * 21 20 18 50 50 H 1.08000 * 120.02145 * 180.25678 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0866 2.6549 0.0001 6 6 3.3314 3.8174 -0.0003 7 6 3.9573 5.0488 0.0045 8 6 5.3439 5.1233 -0.0009 9 7 5.9778 6.3708 -0.0014 10 6 5.1786 7.5986 -0.0024 11 6 6.1093 8.8130 -0.0021 12 1 6.7386 8.7885 -0.8917 13 8 6.9329 8.7817 1.1651 14 6 5.2745 10.0952 -0.0025 15 7 6.1673 11.2607 -0.0545 16 6 5.4776 12.4731 0.4062 17 6 6.7124 11.4464 -1.4059 18 6 7.8020 12.4868 -1.3694 19 1 8.0631 12.9627 -0.4358 20 6 8.4656 12.8311 -2.5279 21 7 8.1479 12.2511 -3.6648 22 14 9.8167 14.1201 -2.4827 23 1 11.1220 13.4603 -2.2257 24 1 9.8685 14.8289 -3.7865 25 1 9.5337 15.0959 -1.3997 26 6 6.1012 3.9596 0.0000 27 6 5.4736 2.7273 0.0005 28 9 6.2095 1.5942 0.0019 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 2.2529 3.7602 0.0001 37 1 3.3681 5.9539 0.0084 38 1 6.9465 6.4226 -0.0011 39 1 4.5495 7.6233 0.8874 40 1 4.5500 7.6223 -0.8925 41 1 6.4386 8.8009 1.9960 42 1 4.6738 10.1380 0.9060 43 1 4.6181 10.1012 -0.8727 44 1 4.7150 12.7554 -0.3198 45 1 5.0074 12.2795 1.3704 46 1 6.1984 13.2840 0.5099 47 1 7.1230 10.5027 -1.7649 48 1 5.9181 11.7754 -2.0759 49 1 8.6144 12.4935 -4.4799 50 1 7.1797 4.0167 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863585948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -108.834277 kcal Electronic energy + Delta-G solvation = -28768.866813 eV Core-core repulsion = 24517.724841 eV Total energy + Delta-G solvation = -4251.141972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -48.86536 -40.22591 -38.77568 -37.78425 -35.79444 -34.74923 -33.89975 -32.53173 -31.04581 -30.29643 -28.47155 -27.35457 -26.76794 -25.70095 -23.83445 -23.34833 -22.11454 -21.65730 -21.29007 -20.17224 -18.52622 -17.68814 -17.11631 -16.68453 -16.53044 -16.18544 -15.79565 -15.60854 -15.50804 -15.20209 -14.77251 -14.59527 -14.40798 -14.25526 -14.13213 -13.80073 -13.62197 -13.30574 -13.18696 -12.73141 -12.67641 -12.56591 -12.31230 -12.24997 -11.98612 -11.71400 -11.62270 -11.49217 -11.23791 -11.17962 -11.04109 -10.99363 -10.81656 -10.65579 -10.45035 -9.83926 -9.78494 -9.69254 -9.20452 -8.98558 -8.45193 -7.31648 -7.28365 -6.05281 -4.06119 0.97748 1.32437 2.88208 3.22899 3.31460 3.37356 3.40710 3.49910 4.16252 4.38949 4.41361 4.46071 4.54505 4.61297 4.68829 4.77550 4.85633 4.95325 4.99250 5.06990 5.10872 5.20262 5.24205 5.28854 5.33598 5.43836 5.51869 5.53256 5.54440 5.61106 5.62812 5.74696 5.79097 5.93332 5.98414 6.00813 6.07634 6.28400 6.31205 6.39145 6.66240 7.05450 7.19546 7.25126 7.25445 7.62764 7.75631 7.94465 8.02984 8.14254 8.50060 9.01154 9.58199 11.05756 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.001749 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.545550 B =16006.765569 C =16519.502496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.314 6.314 5 C 0.031 3.969 6 C -0.129 4.129 7 C -0.173 4.173 8 C 0.221 3.779 9 N -0.733 5.733 10 C 0.093 3.907 11 C 0.104 3.896 12 H 0.110 0.890 13 O -0.539 6.539 14 C 0.028 3.972 15 N -0.531 5.531 16 C 0.041 3.959 17 C 0.193 3.807 18 C -0.506 4.506 19 H 0.063 0.937 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.274 1.274 26 C -0.199 4.199 27 C 0.120 3.880 28 F -0.134 7.134 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.408 0.592 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.365 0.635 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.012 0.988 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.030 0.970 48 H -0.010 1.010 49 H 0.261 0.739 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.269 -20.545 8.938 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.015 4.015 4 O -0.229 6.229 5 C -0.016 4.016 6 C -0.149 4.149 7 C -0.196 4.196 8 C 0.116 3.884 9 N -0.363 5.363 10 C -0.033 4.033 11 C 0.044 3.956 12 H 0.127 0.873 13 O -0.342 6.342 14 C -0.102 4.102 15 N -0.255 5.255 16 C -0.107 4.107 17 C 0.068 3.932 18 C -0.544 4.544 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.540 5.540 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.223 4.223 27 C 0.100 3.900 28 F -0.112 7.112 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.244 0.756 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.211 0.789 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.007 0.993 49 H 0.071 0.929 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.370 -20.692 8.608 26.622 hybrid contribution -0.159 0.907 -0.398 1.003 sum -14.529 -19.785 8.210 25.884 Atomic orbital electron populations 1.21693 0.94261 1.02518 1.02231 1.21476 0.95956 0.94945 1.03754 1.22834 0.78722 0.98730 1.01258 1.86084 1.20928 1.25955 1.89943 1.18610 0.90474 0.85420 1.07106 1.20840 0.99742 0.90983 1.03310 1.20506 0.92500 0.97808 1.08744 1.17448 0.91418 0.85404 0.94174 1.44629 1.08937 1.01473 1.81231 1.22122 0.94822 0.84791 1.01540 1.22133 0.92332 0.90712 0.90430 0.87254 1.86678 1.35974 1.96572 1.15009 1.22606 0.94463 0.92916 1.00229 1.62028 1.32383 1.01520 1.29592 1.22196 0.97265 0.94072 0.97214 1.19790 0.94161 0.97355 0.81941 1.21144 1.17884 1.21204 0.94217 0.91860 1.24988 0.97439 0.96831 0.95392 1.69948 1.42105 1.42960 0.98941 0.86486 0.82204 0.81458 0.77190 1.20594 1.21358 1.19874 1.20336 1.00660 0.89253 1.12034 1.16580 0.85737 0.82238 1.05492 1.91488 1.76739 1.48985 1.94006 0.92328 0.91754 0.92361 0.90823 0.90849 0.92185 0.92141 0.84832 0.85195 0.75564 0.92094 0.91379 0.78925 0.91873 0.94688 0.96932 0.93868 0.90861 0.95228 0.99266 0.92932 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.77 6.30 -26.73 -0.17 -0.94 16 3 C 0.06 0.45 4.74 37.16 0.18 0.63 16 4 O -0.31 -3.59 10.00 -19.92 -0.20 -3.79 16 5 C 0.03 0.36 6.69 -39.20 -0.26 0.10 16 6 C -0.13 -1.27 9.03 -39.47 -0.36 -1.63 16 7 C -0.17 -1.77 9.31 -39.38 -0.37 -2.13 16 8 C 0.22 2.49 6.65 -83.70 -0.56 1.93 16 9 N -0.73 -8.22 5.63 -58.59 -0.33 -8.55 16 10 C 0.09 1.01 4.58 -4.04 -0.02 0.99 16 11 C 0.10 1.49 3.13 -26.74 -0.08 1.41 16 12 H 0.11 1.91 6.73 -51.93 -0.35 1.56 16 13 O -0.54 -7.99 12.99 -35.23 -0.46 -8.45 16 14 C 0.03 0.43 4.65 -3.82 -0.02 0.42 16 15 N -0.53 -10.85 4.59 -244.37 -1.12 -11.97 16 16 C 0.04 0.76 9.31 60.07 0.56 1.32 16 17 C 0.19 4.87 4.55 -4.98 -0.02 4.85 16 18 C -0.51 -14.11 8.58 -34.44 -0.30 -14.40 16 19 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.20 -2.31 9.87 -39.34 -0.39 -2.70 16 27 C 0.12 1.51 7.31 -39.32 -0.29 1.23 16 28 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 36 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 37 H 0.13 1.14 6.73 -52.49 -0.35 0.79 16 38 H 0.41 4.71 8.36 -40.82 -0.34 4.37 16 39 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 40 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 41 H 0.37 4.06 9.05 45.56 0.41 4.47 16 42 H 0.06 0.82 7.75 -51.93 -0.40 0.41 16 43 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 44 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 45 H 0.04 0.66 7.85 -51.92 -0.41 0.25 16 46 H 0.07 1.47 7.01 -51.93 -0.36 1.10 16 47 H 0.03 0.80 6.61 -51.93 -0.34 0.45 16 48 H -0.01 -0.28 8.07 -51.93 -0.42 -0.70 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -32.02 410.44 -9.38 -41.40 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.40 Total: 3.90 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.82 Total: -7.78 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.71 Total: -46.29 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.66 Total: -12.24 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.02 -9.38 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863585948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.434 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds