Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 O 1.42899 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.36055 * 116.99767 * 179.97438 * 4 3 2 6 6 C 1.38627 * 119.99343 * 0.02562 * 5 4 3 7 7 C 1.38141 * 120.04513 * 179.74544 * 6 5 4 8 8 C 1.38865 * 120.01652 * 0.51199 * 7 6 5 9 9 N 1.39932 * 120.01027 * 179.74468 * 8 7 6 10 10 C 1.46503 * 120.00343 * 359.72207 * 9 8 7 11 11 C 1.52993 * 109.47413 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46819 * 60.00643 * 11 10 9 13 13 O 1.42888 * 109.47603 * 300.00456 * 11 10 9 14 14 C 1.52999 * 109.47031 * 180.02562 * 11 10 9 15 15 N 1.46903 * 109.47066 * 182.16521 * 14 11 10 16 16 C 1.46904 * 110.99849 * 199.76749 * 15 14 11 17 17 C 1.46895 * 111.00391 * 75.81297 * 15 14 11 18 18 C 1.50700 * 109.47006 * 190.00120 * 17 15 14 19 19 H 1.07997 * 120.00041 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00066 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00435 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47302 * 89.99737 * 22 20 18 24 24 H 1.48498 * 109.47415 * 210.00291 * 22 20 18 25 25 H 1.48501 * 109.46855 * 330.00009 * 22 20 18 26 26 C 1.38843 * 119.97858 * 359.46771 * 8 7 6 27 27 C 1.38291 * 119.95478 * 0.27748 * 26 8 7 28 28 F 1.35106 * 120.00565 * 180.02562 * 27 26 8 29 29 H 1.08997 * 109.46640 * 60.00443 * 1 2 3 30 30 H 1.09000 * 109.46487 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47455 * 300.00343 * 1 2 3 32 32 H 1.08991 * 109.47241 * 240.00082 * 2 1 3 33 33 H 1.08997 * 109.46640 * 119.99557 * 2 1 3 34 34 H 1.08996 * 109.47325 * 59.99578 * 3 2 1 35 35 H 1.09003 * 109.46681 * 300.00070 * 3 2 1 36 36 H 1.08001 * 119.97457 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.99339 * 180.25905 * 7 6 5 38 38 H 0.97001 * 119.99995 * 179.72691 * 9 8 7 39 39 H 1.09000 * 109.46607 * 59.99929 * 10 9 8 40 40 H 1.09001 * 109.47071 * 300.00783 * 10 9 8 41 41 H 0.96705 * 114.00420 * 300.00136 * 13 11 10 42 42 H 1.08996 * 109.47434 * 62.16129 * 14 11 10 43 43 H 1.09005 * 109.47356 * 302.16016 * 14 11 10 44 44 H 1.08999 * 109.47114 * 291.00876 * 16 15 14 45 45 H 1.09008 * 109.47158 * 51.00884 * 16 15 14 46 46 H 1.08996 * 109.47159 * 171.00329 * 16 15 14 47 47 H 1.09001 * 109.46706 * 309.99859 * 17 15 14 48 48 H 1.08996 * 109.47032 * 69.99954 * 17 15 14 49 49 H 0.96993 * 120.00483 * 179.97438 * 21 20 18 50 50 H 1.08000 * 120.02145 * 180.25678 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0866 2.6549 0.0001 6 6 3.3314 3.8174 -0.0003 7 6 3.9573 5.0488 0.0045 8 6 5.3439 5.1233 -0.0009 9 7 5.9778 6.3708 -0.0014 10 6 5.1786 7.5986 -0.0024 11 6 6.1093 8.8130 -0.0021 12 1 6.7386 8.7885 -0.8917 13 8 6.9329 8.7817 1.1651 14 6 5.2745 10.0952 -0.0025 15 7 6.1673 11.2607 -0.0545 16 6 5.4776 12.4731 0.4062 17 6 6.7124 11.4464 -1.4059 18 6 7.8020 12.4868 -1.3694 19 1 8.0631 12.9627 -0.4358 20 6 8.4656 12.8311 -2.5279 21 7 8.1479 12.2511 -3.6648 22 14 9.8167 14.1201 -2.4827 23 1 11.1220 13.4603 -2.2257 24 1 9.8685 14.8289 -3.7865 25 1 9.5337 15.0959 -1.3997 26 6 6.1012 3.9596 0.0000 27 6 5.4736 2.7273 0.0005 28 9 6.2095 1.5942 0.0019 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 2.2529 3.7602 0.0001 37 1 3.3681 5.9539 0.0084 38 1 6.9465 6.4226 -0.0011 39 1 4.5495 7.6233 0.8874 40 1 4.5500 7.6223 -0.8925 41 1 6.4386 8.8009 1.9960 42 1 4.6738 10.1380 0.9060 43 1 4.6181 10.1012 -0.8727 44 1 4.7150 12.7554 -0.3198 45 1 5.0074 12.2795 1.3704 46 1 6.1984 13.2840 0.5099 47 1 7.1230 10.5027 -1.7649 48 1 5.9181 11.7754 -2.0759 49 1 8.6144 12.4935 -4.4799 50 1 7.1797 4.0167 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863585948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -131.763143 kcal Electronic energy + Delta-G solvation = -28769.861083 eV Core-core repulsion = 24517.724841 eV Total energy + Delta-G solvation = -4252.136242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -49.84122 -41.03300 -39.77907 -38.85462 -37.20677 -35.57739 -34.60652 -34.53823 -31.93705 -31.34427 -29.61157 -29.09669 -27.47377 -26.80481 -25.41418 -24.27762 -23.23844 -22.41440 -22.09722 -21.71023 -19.33451 -18.62234 -18.52381 -18.03113 -17.37988 -17.25283 -16.94795 -16.67126 -16.54269 -16.42230 -16.01474 -15.88775 -15.30014 -15.21789 -15.07208 -15.06555 -14.85461 -14.43978 -14.04832 -13.94926 -13.87441 -13.43000 -13.29247 -13.15439 -13.04000 -12.91752 -12.88777 -12.55994 -12.51912 -12.35475 -12.32678 -12.27742 -12.13886 -11.80120 -11.58484 -11.53766 -11.33402 -10.84518 -10.60569 -10.49080 -9.85890 -8.93773 -8.20903 -8.15996 -6.29939 0.13498 0.47449 1.40160 1.41824 1.52342 2.16075 2.34430 2.40666 2.66194 3.11847 3.25561 3.34112 3.64350 3.72653 3.90389 3.97507 3.97784 4.05412 4.15719 4.18301 4.28151 4.31374 4.44716 4.45368 4.54082 4.58074 4.60449 4.63207 4.71399 4.74474 4.81078 4.83560 4.97342 5.08905 5.11954 5.13529 5.18562 5.19648 5.23003 5.25821 5.32033 5.35520 5.56909 5.65292 6.06837 6.24550 6.34553 6.46263 6.66110 6.72259 6.86417 7.03421 7.39723 8.89893 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.001749 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.545550 B =16006.765569 C =16519.502496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.336 6.336 5 C 0.023 3.977 6 C -0.123 4.123 7 C -0.168 4.168 8 C 0.212 3.788 9 N -0.736 5.736 10 C 0.106 3.894 11 C 0.114 3.886 12 H 0.067 0.933 13 O -0.557 6.557 14 C 0.027 3.973 15 N -0.543 5.543 16 C 0.042 3.958 17 C 0.209 3.791 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.001 3.999 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.264 1.264 26 C -0.206 4.206 27 C 0.092 3.908 28 F -0.147 7.147 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.152 0.848 38 H 0.404 0.596 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.383 0.617 42 H 0.103 0.897 43 H 0.034 0.966 44 H 0.008 0.992 45 H 0.085 0.915 46 H 0.051 0.949 47 H 0.005 0.995 48 H -0.039 1.039 49 H 0.263 0.737 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 -20.095 10.431 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.023 4.023 4 O -0.252 6.252 5 C -0.024 4.024 6 C -0.142 4.142 7 C -0.190 4.190 8 C 0.107 3.893 9 N -0.366 5.366 10 C -0.019 4.019 11 C 0.054 3.946 12 H 0.086 0.914 13 O -0.364 6.364 14 C -0.103 4.103 15 N -0.266 5.266 16 C -0.106 4.106 17 C 0.083 3.917 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.229 4.229 27 C 0.072 3.928 28 F -0.126 7.126 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.239 0.761 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.121 0.879 43 H 0.052 0.948 44 H 0.027 0.973 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.023 0.977 48 H -0.022 1.022 49 H 0.072 0.928 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.246 -20.250 10.132 27.869 hybrid contribution 0.347 0.715 -0.818 1.141 sum -15.899 -19.536 9.313 26.854 Atomic orbital electron populations 1.21676 0.92620 1.03154 1.02823 1.21498 0.97259 0.94147 1.03152 1.23122 0.76891 0.99827 1.02418 1.86069 1.23028 1.26145 1.89930 1.18808 0.90330 0.86293 1.06965 1.21131 1.01043 0.90038 1.01975 1.20796 0.92061 0.98786 1.07402 1.17549 0.92034 0.85039 0.94662 1.44618 1.08808 1.01614 1.81553 1.21988 0.93897 0.82936 1.03110 1.21851 0.91891 0.91885 0.89010 0.91449 1.86640 1.37077 1.96663 1.15982 1.22757 0.94148 0.91286 1.02060 1.61903 1.34756 1.03813 1.26164 1.22214 0.96512 0.92781 0.99077 1.19395 0.92891 0.95254 0.84196 1.21502 1.18664 1.21814 0.94185 0.92157 1.25882 0.99836 0.98956 0.95003 1.70070 1.43389 1.44434 0.99597 0.85425 0.79006 0.78882 0.77566 1.20150 1.20749 1.18796 1.20405 1.01006 0.89319 1.12209 1.16889 0.86497 0.82151 1.07288 1.91440 1.77160 1.49701 1.94326 0.91807 0.91156 0.91657 0.91565 0.91397 0.90777 0.91020 0.81997 0.83067 0.76064 0.89200 0.90883 0.76843 0.87852 0.94816 0.97313 0.89653 0.93017 0.97696 1.02168 0.92782 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.12 -1.40 6.30 30.60 0.19 -1.21 16 3 C 0.05 0.70 4.74 71.98 0.34 1.04 16 4 O -0.34 -7.50 10.00 -94.18 -0.94 -8.45 16 5 C 0.02 0.52 6.69 22.52 0.15 0.67 16 6 C -0.12 -2.13 9.03 22.34 0.20 -1.93 16 7 C -0.17 -2.99 9.31 22.40 0.21 -2.78 16 8 C 0.21 4.52 6.65 38.14 0.25 4.77 16 9 N -0.74 -15.67 5.63 -339.29 -1.91 -17.58 16 10 C 0.11 2.06 4.58 86.38 0.40 2.46 16 11 C 0.11 3.16 3.13 30.59 0.10 3.26 16 12 H 0.07 2.45 6.73 -2.39 -0.02 2.44 16 13 O -0.56 -15.81 12.99 -148.98 -1.93 -17.75 16 14 C 0.03 0.78 4.65 86.30 0.40 1.18 16 15 N -0.54 -21.87 4.59 -927.05 -4.25 -26.12 16 16 C 0.04 1.51 9.31 127.69 1.19 2.70 16 17 C 0.21 10.88 4.55 85.56 0.39 11.27 16 18 C -0.52 -29.72 8.58 25.60 0.22 -29.50 16 19 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16 20 C 0.00 0.06 5.46 84.65 0.46 0.52 16 21 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 22 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 26 C -0.21 -4.80 9.87 22.43 0.22 -4.58 16 27 C 0.09 2.36 7.31 22.44 0.16 2.52 16 28 F -0.15 -4.20 17.11 44.97 0.77 -3.43 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 35 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 36 H 0.16 1.80 6.29 -2.91 -0.02 1.78 16 37 H 0.15 2.03 6.73 -2.91 -0.02 2.01 16 38 H 0.40 9.29 8.36 -92.71 -0.78 8.52 16 39 H 0.09 1.29 7.94 -2.39 -0.02 1.27 16 40 H 0.07 1.38 7.96 -2.39 -0.02 1.37 16 41 H 0.38 7.48 9.05 -74.05 -0.67 6.81 16 42 H 0.10 2.23 7.75 -2.39 -0.02 2.21 16 43 H 0.03 1.02 8.00 -2.38 -0.02 1.00 16 44 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 45 H 0.08 2.30 7.85 -2.38 -0.02 2.28 16 46 H 0.05 2.04 7.01 -2.39 -0.02 2.02 16 47 H 0.00 0.28 6.61 -2.39 -0.02 0.27 16 48 H -0.04 -2.22 8.07 -2.39 -0.02 -2.24 16 49 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -71.46 410.44 -0.85 -72.31 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.49 Total: 20.25 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.60 Total: -9.89 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -5.88 Total: -99.66 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -2.88 Total: -26.19 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.77 Total: -3.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.46 -0.85 -72.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863585948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.454 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds