Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47406 * 2 1 4 4 H 1.08995 * 109.46964 * 53.44012 * 3 2 1 5 5 S 1.81405 * 109.46785 * 293.44692 * 3 2 1 6 6 C 1.81396 * 102.99813 * 171.47461 * 5 3 2 7 7 C 1.50690 * 109.47268 * 173.44848 * 3 2 1 8 8 O 1.21277 * 120.00533 * 100.00006 * 7 3 2 9 9 N 1.34784 * 119.99944 * 279.99888 * 7 3 2 10 10 C 1.47000 * 120.61105 * 0.02562 * 9 7 3 11 11 C 1.53184 * 108.73829 * 126.39178 * 10 9 7 12 12 C 1.53044 * 109.34196 * 54.61668 * 11 10 9 13 13 C 1.52998 * 109.46140 * 178.59942 * 12 11 10 14 14 H 1.09000 * 110.64050 * 59.29828 * 13 12 11 15 15 C 1.55159 * 110.72155 * 182.44521 * 13 12 11 16 16 C 1.55120 * 101.48786 * 153.73486 * 15 13 12 17 17 N 1.47430 * 104.93990 * 323.22180 * 16 15 13 18 18 C 1.36937 * 125.64383 * 204.03672 * 17 16 15 19 19 H 1.08001 * 119.99570 * 150.33387 * 18 17 16 20 20 C 1.38807 * 120.00302 * 330.33350 * 18 17 16 21 21 N 1.31622 * 120.00149 * 158.96938 * 20 18 17 22 22 Si 1.86800 * 119.99980 * 338.97082 * 20 18 17 23 23 H 1.48498 * 109.47329 * 88.04258 * 22 20 18 24 24 H 1.48502 * 109.47094 * 208.03988 * 22 20 18 25 25 H 1.48501 * 109.47125 * 328.03787 * 22 20 18 26 26 C 1.47016 * 108.70366 * 24.00334 * 17 16 15 27 27 C 1.53041 * 109.53836 * 298.62356 * 12 11 10 28 28 C 1.46925 * 120.63256 * 180.02562 * 9 7 3 29 29 H 1.09003 * 109.47354 * 176.65619 * 1 2 3 30 30 H 1.09007 * 109.46941 * 296.65245 * 1 2 3 31 31 H 1.08993 * 109.46971 * 56.64658 * 1 2 3 32 32 H 1.09002 * 109.46933 * 239.99655 * 2 1 3 33 33 H 1.09005 * 109.47245 * 120.00069 * 2 1 3 34 34 H 1.09007 * 109.47079 * 65.26486 * 6 5 3 35 35 H 1.09002 * 109.47200 * 185.25873 * 6 5 3 36 36 H 1.08997 * 109.47359 * 305.26217 * 6 5 3 37 37 H 1.09000 * 109.62827 * 6.59689 * 10 9 7 38 38 H 1.08997 * 109.57580 * 246.14937 * 10 9 7 39 39 H 1.09004 * 109.49348 * 294.65233 * 11 10 9 40 40 H 1.08999 * 109.50133 * 174.58635 * 11 10 9 41 41 H 1.08998 * 109.45686 * 58.64096 * 12 11 10 42 42 H 1.09005 * 110.99889 * 271.94221 * 15 13 12 43 43 H 1.08995 * 111.00554 * 35.78618 * 15 13 12 44 44 H 1.08991 * 110.41880 * 204.29276 * 16 15 13 45 45 H 1.09005 * 110.20760 * 82.03925 * 16 15 13 46 46 H 0.97001 * 120.00305 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.88189 * 239.51941 * 26 17 16 48 48 H 1.09005 * 110.00768 * 118.43125 * 26 17 16 49 49 H 1.09003 * 109.49493 * 181.32008 * 27 12 11 50 50 H 1.08998 * 109.49293 * 301.37688 * 27 12 11 51 51 H 1.08996 * 109.58800 * 113.83778 * 28 9 7 52 52 H 1.08999 * 109.70088 * 353.48651 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5841 1.9890 0.8254 5 16 1.6000 2.2393 -1.5691 6 6 2.0424 3.9752 -1.2833 7 6 3.5382 1.4455 0.1621 8 8 4.2528 1.5897 -0.8071 9 7 4.0842 1.2881 1.3843 10 6 3.2308 1.1118 2.5682 11 6 3.6657 -0.1598 3.3034 12 6 5.1623 -0.0795 3.6131 13 6 5.5925 -1.3327 4.3782 14 1 5.3907 -2.2291 3.7918 15 6 7.0940 -1.2537 4.7612 16 6 7.1399 -2.1599 6.0194 17 7 5.8699 -1.8999 6.7216 18 6 5.6449 -2.0871 8.0593 19 1 4.9256 -1.4701 8.5774 20 6 6.3412 -3.0698 8.7495 21 7 6.4558 -2.9987 10.0587 22 14 7.1155 -4.4932 7.8200 23 1 8.4856 -4.1161 7.3892 24 1 7.1851 -5.6832 8.7056 25 1 6.2913 -4.8118 6.6266 26 6 4.8855 -1.4057 5.7480 27 6 5.9513 0.0153 2.3051 28 6 5.5431 1.2894 1.5584 29 1 -0.3634 -1.0259 -0.0599 30 1 -0.3633 0.4610 0.9185 31 1 -0.3633 0.5650 -0.8584 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.1215 4.0585 -1.1537 35 1 1.7319 4.5749 -2.1389 36 1 1.5397 4.3352 -0.3857 37 1 2.1900 1.0171 2.2586 38 1 3.3409 1.9716 3.2290 39 1 3.4704 -1.0284 2.6744 40 1 3.1060 -0.2514 4.2342 41 1 5.3604 0.8030 4.2214 42 1 7.7218 -1.6537 3.9650 43 1 7.3813 -0.2314 5.0068 44 1 7.9854 -1.8897 6.6519 45 1 7.2038 -3.2079 5.7265 46 1 6.9420 -3.6856 10.5411 47 1 4.5405 -0.4139 6.0405 48 1 4.0395 -2.0908 5.6925 49 1 7.0183 0.0488 2.5255 50 1 5.7349 -0.8553 1.6859 51 1 5.8412 2.1637 2.1370 52 1 6.0295 1.3134 0.5833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039117892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -23.980355 kcal Electronic energy + Delta-G solvation = -28669.008091 eV Core-core repulsion = 24987.758837 eV Total energy + Delta-G solvation = -3681.249254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.65996 -38.72073 -36.86308 -35.27187 -33.75230 -32.03206 -31.44705 -29.84649 -29.36017 -28.40685 -27.96267 -25.33944 -23.80390 -23.28911 -22.38238 -21.30486 -20.60949 -19.58829 -19.27163 -17.80289 -16.90622 -16.84395 -15.95251 -15.64813 -15.39319 -15.20708 -15.02324 -14.44090 -14.29713 -14.16295 -13.92013 -13.74783 -13.65530 -13.43793 -13.17412 -12.92484 -12.71864 -12.68242 -12.43362 -12.33413 -12.25451 -11.91843 -11.62598 -11.60399 -11.40571 -11.38482 -11.18543 -11.08061 -10.88125 -10.59925 -10.42215 -10.34928 -10.11006 -10.05222 -9.96350 -9.90756 -9.52848 -8.89041 -8.60403 -7.91176 -6.90600 -5.99415 -3.35647 1.20227 2.06391 2.30812 2.76769 3.34252 3.46049 3.51108 3.99269 4.30212 4.42510 4.53489 4.55289 4.63663 4.67650 4.78865 4.85074 4.86026 4.88099 4.99253 5.01971 5.05372 5.13954 5.24615 5.29256 5.34040 5.40347 5.42547 5.50475 5.52434 5.58308 5.58590 5.66062 5.71076 5.77733 5.84852 5.90076 5.94687 6.00539 6.02113 6.19313 6.27256 6.33204 6.39211 6.57485 6.67874 6.79429 6.83323 7.06457 7.84100 7.84573 8.31616 8.84362 9.67006 10.22506 11.17074 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.002349 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.726982 B =11916.885658 C =12346.411163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.086 4.086 4 H 0.108 0.892 5 S -0.198 6.198 6 C -0.130 4.130 7 C 0.512 3.488 8 O -0.522 6.522 9 N -0.605 5.605 10 C 0.102 3.898 11 C -0.131 4.131 12 C -0.073 4.073 13 C -0.096 4.096 14 H 0.071 0.929 15 C -0.126 4.126 16 C 0.116 3.884 17 N -0.608 5.608 18 C -0.245 4.245 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.906 5.906 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.301 1.301 25 H -0.275 1.275 26 C 0.139 3.861 27 C -0.128 4.128 28 C 0.112 3.888 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.264 0.736 47 H 0.031 0.969 48 H 0.027 0.973 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.722 11.556 -21.845 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.218 4.218 4 H 0.126 0.874 5 S 0.029 5.971 6 C -0.299 4.299 7 C 0.296 3.704 8 O -0.397 6.397 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.169 4.169 12 C -0.092 4.092 13 C -0.115 4.115 14 H 0.089 0.911 15 C -0.164 4.164 16 C -0.009 4.009 17 N -0.335 5.335 18 C -0.373 4.373 19 H 0.103 0.897 20 C -0.171 4.171 21 N -0.549 5.549 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.229 1.229 25 H -0.200 1.200 26 C 0.014 3.986 27 C -0.166 4.166 28 C -0.010 4.010 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.045 0.955 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.756 11.124 -23.038 27.380 hybrid contribution 1.044 -0.393 0.920 1.446 sum -8.713 10.731 -22.117 26.081 Atomic orbital electron populations 1.21857 0.93844 1.02561 1.02882 1.21347 0.97469 0.91187 1.03948 1.23661 0.95658 1.02505 0.99971 0.87448 1.86686 1.81992 1.06255 1.22141 1.23460 1.05220 0.95503 1.05734 1.20488 0.90219 0.76773 0.82921 1.90736 1.62272 1.48741 1.37944 1.48122 1.07439 1.71658 1.06660 1.21939 0.94351 0.99063 0.86761 1.22010 0.97088 0.96904 1.00920 1.21126 0.93835 0.98770 0.95500 1.22208 0.96133 0.96786 0.96362 0.91062 1.22815 0.95349 1.00495 0.97770 1.21918 0.90739 0.95826 0.92437 1.44722 1.05873 1.78157 1.04756 1.18567 1.24461 1.13584 0.80668 0.89719 1.25288 0.98902 0.97827 0.95054 1.69836 1.43461 1.34949 1.06672 0.86841 0.79156 0.83497 0.79229 1.21239 1.22888 1.20022 1.21419 0.92434 0.97246 0.87481 1.21984 1.00790 0.97431 0.96403 1.21667 0.79309 0.98234 1.01813 0.91902 0.92328 0.91199 0.90365 0.89875 0.90243 0.87921 0.90619 0.89730 0.90924 0.91410 0.89739 0.90652 0.91934 0.91293 0.92809 0.96288 0.92661 0.95143 0.95525 0.90256 0.91577 0.91431 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.80 37.16 0.36 -0.61 16 2 C -0.10 -0.77 5.02 -26.73 -0.13 -0.91 16 3 C -0.09 -0.73 1.72 -27.89 -0.05 -0.78 16 4 H 0.11 0.73 6.80 -51.93 -0.35 0.38 16 5 S -0.20 -1.89 19.86 -107.50 -2.14 -4.03 16 6 C -0.13 -0.99 10.62 101.05 1.07 0.09 16 7 C 0.51 5.60 6.74 -10.99 -0.07 5.53 16 8 O -0.52 -7.53 15.46 5.56 0.09 -7.45 16 9 N -0.60 -5.79 2.97 -172.70 -0.51 -6.30 16 10 C 0.10 0.79 5.75 -3.67 -0.02 0.77 16 11 C -0.13 -1.22 5.20 -26.61 -0.14 -1.36 16 12 C -0.07 -0.81 1.53 -90.58 -0.14 -0.95 16 13 C -0.10 -1.40 2.48 -88.79 -0.22 -1.62 16 14 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.13 -1.99 5.50 -24.47 -0.13 -2.12 16 16 C 0.12 2.47 4.90 -2.41 -0.01 2.46 16 17 N -0.61 -14.52 3.04 -169.94 -0.52 -15.03 16 18 C -0.25 -6.93 10.51 -15.06 -0.16 -7.09 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.03 0.84 5.43 -17.43 -0.09 0.75 16 21 N -0.91 -27.85 13.97 55.49 0.78 -27.08 16 22 Si 0.88 22.67 24.57 -169.99 -4.18 18.49 16 23 H -0.29 -7.11 7.09 56.52 0.40 -6.71 16 24 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 25 H -0.27 -6.98 6.86 56.52 0.39 -6.59 16 26 C 0.14 2.61 5.88 -3.07 -0.02 2.59 16 27 C -0.13 -1.28 5.19 -26.60 -0.14 -1.42 16 28 C 0.11 1.10 6.43 -3.70 -0.02 1.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.07 0.48 7.10 -51.93 -0.37 0.11 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.60 6.99 -51.93 -0.36 0.23 16 34 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.52 4.86 -51.93 -0.25 0.27 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.81 7.27 -51.93 -0.38 0.43 16 41 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.06 0.85 8.08 -51.93 -0.42 0.44 16 43 H 0.07 1.04 8.05 -51.93 -0.42 0.63 16 44 H 0.05 1.22 7.86 -51.93 -0.41 0.81 16 45 H 0.02 0.43 5.44 -51.93 -0.28 0.15 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.03 0.56 7.68 -51.93 -0.40 0.16 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.77 7.27 -51.93 -0.38 0.40 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.09 1.00 7.01 -51.93 -0.36 0.63 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -33.14 400.25 -9.82 -42.96 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -9.45 Total: -4.00 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.25 Total: -48.41 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.09 Total: -7.45 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.18 Total: 18.49 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.14 Total: -4.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.14 -9.82 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039117892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.977 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds