Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 H 1.08999 * 109.47275 * 305.87467 * 3 2 1 5 5 S 1.81399 * 109.47043 * 185.87229 * 3 2 1 6 6 C 1.81399 * 102.99836 * 66.54763 * 5 3 2 7 7 C 1.50704 * 109.47258 * 65.87634 * 3 2 1 8 8 O 1.21285 * 120.00051 * 29.58706 * 7 3 2 9 9 N 1.34773 * 120.00229 * 209.59749 * 7 3 2 10 10 C 1.44566 * 118.70678 * 354.35441 * 9 7 3 11 11 C 1.54756 * 109.58076 * 270.62647 * 10 9 7 12 12 C 1.47058 * 110.52723 * 288.38276 * 11 10 9 13 13 C 1.52810 * 114.32343 * 62.90612 * 12 11 10 14 14 C 1.50718 * 109.27973 * 275.70115 * 13 12 11 15 15 C 1.53979 * 110.88401 * 213.00807 * 14 13 12 16 16 C 1.54468 * 104.83106 * 120.03508 * 15 14 13 17 17 N 1.48184 * 104.61971 * 23.87529 * 16 15 14 18 18 C 1.36933 * 127.80403 * 140.62698 * 17 16 15 19 19 H 1.07998 * 119.99891 * 333.18385 * 18 17 16 20 20 C 1.38811 * 119.99819 * 153.18434 * 18 17 16 21 21 N 1.31619 * 119.99635 * 167.60349 * 20 18 17 22 22 Si 1.86798 * 120.00083 * 347.59952 * 20 18 17 23 23 H 1.48501 * 109.47108 * 85.33417 * 22 20 18 24 24 H 1.48503 * 109.46985 * 205.33093 * 22 20 18 25 25 H 1.48503 * 109.46919 * 325.33317 * 22 20 18 26 26 C 1.48242 * 104.38714 * 320.64832 * 17 16 15 27 27 C 1.47606 * 118.69275 * 174.30699 * 9 7 3 28 28 H 1.09005 * 109.47399 * 184.36727 * 1 2 3 29 29 H 1.09003 * 109.46773 * 304.36566 * 1 2 3 30 30 H 1.08994 * 109.47356 * 64.36488 * 1 2 3 31 31 H 1.08998 * 109.46978 * 240.00049 * 2 1 3 32 32 H 1.09004 * 109.47140 * 120.00147 * 2 1 3 33 33 H 1.08995 * 109.47319 * 64.62828 * 6 5 3 34 34 H 1.09003 * 109.47118 * 184.62477 * 6 5 3 35 35 H 1.08996 * 109.47240 * 304.62595 * 6 5 3 36 36 H 1.08992 * 109.44822 * 150.59842 * 10 9 7 37 37 H 1.09001 * 109.44526 * 30.65025 * 10 9 7 38 38 H 1.09001 * 109.26391 * 48.65223 * 11 10 9 39 39 H 1.08995 * 109.25922 * 168.11342 * 11 10 9 40 40 H 1.09004 * 108.50852 * 184.15342 * 12 11 10 41 41 H 1.09000 * 108.51760 * 301.64565 * 12 11 10 42 42 H 1.08999 * 109.50143 * 35.64392 * 13 12 11 43 43 H 1.08999 * 109.50299 * 155.76026 * 13 12 11 44 44 H 1.08998 * 110.37124 * 238.87345 * 15 14 13 45 45 H 1.08998 * 110.37187 * 1.19817 * 15 14 13 46 46 H 1.08997 * 110.40886 * 142.65910 * 16 15 14 47 47 H 1.08996 * 110.40787 * 264.97486 * 16 15 14 48 48 H 0.97004 * 119.99794 * 180.02562 * 21 20 18 49 49 H 1.08992 * 110.41385 * 280.40533 * 26 17 16 50 50 H 1.09007 * 110.40865 * 157.95146 * 26 17 16 51 51 H 1.09001 * 108.96571 * 17.34237 * 27 9 7 52 52 H 1.09003 * 108.92279 * 258.60299 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5933 1.9858 -0.8327 5 16 3.8455 1.4455 -0.1750 6 6 4.0941 0.7984 -1.8513 7 6 1.6600 2.1097 1.2967 8 8 1.5489 1.4500 2.3084 9 7 1.4433 3.4394 1.3323 10 6 1.7025 4.2173 0.1416 11 6 3.1744 4.6953 0.1447 12 6 3.3747 5.7414 1.1587 13 6 3.1287 5.2811 2.5949 14 6 1.6560 5.3729 2.9016 15 6 1.4247 5.7310 4.3812 16 6 0.6419 7.0623 4.3481 17 7 -0.0200 7.0741 3.0224 18 6 -1.2823 7.5092 2.7183 19 1 -2.0559 7.4906 3.4716 20 6 -1.5674 7.9741 1.4418 21 7 -2.8171 8.1610 1.0735 22 14 -0.1776 8.3344 0.2469 23 1 0.2073 7.0844 -0.4562 24 1 -0.6276 9.3425 -0.7463 25 1 0.9924 8.8629 0.9934 26 6 0.9930 6.5080 2.0999 27 6 0.9496 4.0438 2.5852 28 1 -0.3634 -1.0247 0.0783 29 1 -0.3633 0.5801 0.8483 30 1 -0.3634 0.4446 -0.9264 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.6737 1.4957 -2.5760 34 1 5.1609 0.6778 -2.0398 35 1 3.5970 -0.1671 -1.9455 36 1 1.0400 5.0824 0.1219 37 1 1.5226 3.6021 -0.7401 38 1 3.8265 3.8504 0.3660 39 1 3.4248 5.0945 -0.8381 40 1 4.3993 6.1055 1.0826 41 1 2.7000 6.5691 0.9401 42 1 3.4604 4.2490 2.7081 43 1 3.6840 5.9198 3.2819 44 1 0.8350 4.9563 4.8714 45 1 2.3778 5.8641 4.8929 46 1 -0.1019 7.0857 5.1445 47 1 1.3244 7.9069 4.4417 48 1 -3.0164 8.4856 0.1814 49 1 1.7296 7.2656 1.8330 50 1 0.5128 6.1113 1.2053 51 1 1.1209 3.3473 3.4060 52 1 -0.1213 4.2249 2.4923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = 3.785330 kcal Electronic energy + Delta-G solvation = -30620.882813 eV Core-core repulsion = 26940.837570 eV Total energy + Delta-G solvation = -3680.045243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.81044 -38.89896 -36.21248 -34.67587 -33.72379 -32.92227 -31.27772 -29.23685 -29.10172 -28.27612 -27.12385 -25.76542 -24.97378 -23.43125 -22.33302 -21.30469 -19.96133 -19.01355 -18.49413 -17.47366 -17.13780 -16.69734 -16.13828 -15.61043 -15.27428 -15.03597 -14.53214 -14.28859 -14.06743 -13.83690 -13.80371 -13.70264 -13.52983 -13.35619 -13.22531 -12.87150 -12.63551 -12.57901 -12.19130 -12.10331 -11.87121 -11.74020 -11.56973 -11.31222 -11.19457 -11.13737 -11.05090 -10.81400 -10.70244 -10.39229 -10.31687 -10.12051 -10.03793 -9.84475 -9.72949 -9.63196 -9.43962 -8.76712 -8.44862 -7.85522 -7.00563 -5.96785 -3.35460 1.08158 2.17820 2.92972 3.04989 3.20608 3.39749 3.41737 4.26209 4.43789 4.47279 4.66767 4.79268 4.83057 4.84825 4.89817 4.99796 5.07263 5.09416 5.10057 5.23952 5.29488 5.36881 5.39197 5.46068 5.51219 5.64991 5.69681 5.70572 5.75617 5.89026 5.94648 5.95375 5.98956 6.05063 6.10497 6.16995 6.22012 6.24843 6.33408 6.40424 6.42948 6.51860 6.60254 6.70696 6.75621 6.80095 6.86844 7.46620 7.70654 8.18890 8.30457 8.77410 9.63311 10.22942 11.19922 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.004225 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.782760 B = 6626.231322 C = 6735.697392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.109 0.891 5 S -0.213 6.213 6 C -0.130 4.130 7 C 0.533 3.467 8 O -0.530 6.530 9 N -0.588 5.588 10 C 0.092 3.908 11 C -0.138 4.138 12 C -0.139 4.139 13 C -0.095 4.095 14 C -0.083 4.083 15 C -0.121 4.121 16 C 0.126 3.874 17 N -0.609 5.609 18 C -0.233 4.233 19 H 0.091 0.909 20 C 0.022 3.978 21 N -0.916 5.916 22 Si 0.885 3.115 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.108 3.892 27 C 0.129 3.871 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.026 0.974 48 H 0.263 0.737 49 H 0.042 0.958 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.231 -13.676 -5.401 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.221 4.221 4 H 0.127 0.873 5 S 0.015 5.985 6 C -0.299 4.299 7 C 0.319 3.681 8 O -0.407 6.407 9 N -0.319 5.319 10 C -0.032 4.032 11 C -0.177 4.177 12 C -0.176 4.176 13 C -0.133 4.133 14 C -0.086 4.086 15 C -0.161 4.161 16 C 0.000 4.000 17 N -0.334 5.334 18 C -0.360 4.360 19 H 0.108 0.892 20 C -0.177 4.177 21 N -0.560 5.560 22 Si 0.716 3.284 23 H -0.213 1.213 24 H -0.230 1.230 25 H -0.195 1.195 26 C -0.017 4.017 27 C 0.008 3.992 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.105 0.895 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.690 -13.546 -4.293 20.438 hybrid contribution -0.221 0.050 -1.937 1.950 sum 14.469 -13.495 -6.230 20.743 Atomic orbital electron populations 1.21821 0.94697 1.02433 1.02225 1.21673 0.96786 0.92487 1.03491 1.23565 0.96280 1.01327 1.00907 0.87291 1.87063 1.05255 1.85335 1.20868 1.23518 1.06316 1.03884 0.96185 1.19551 0.77312 0.82422 0.88864 1.90676 1.51933 1.63631 1.34507 1.47638 1.64525 1.06307 1.13417 1.21941 0.97708 0.96957 0.86560 1.21401 0.96478 1.00324 0.99452 1.20758 1.01988 0.99781 0.95104 1.21100 0.94841 1.01269 0.96066 1.21360 0.94890 0.95216 0.97114 1.22653 1.00031 0.99247 0.94135 1.21718 0.94688 0.93902 0.89664 1.45348 1.12469 1.72126 1.03476 1.18666 0.83453 1.35555 0.98330 0.89153 1.25198 0.95981 0.98771 0.97734 1.69743 1.16908 1.49665 1.19662 0.86919 0.83026 0.77604 0.80886 1.21305 1.23003 1.19487 1.22625 0.91695 0.93121 0.94257 1.22093 0.98356 0.93902 0.84888 0.91988 0.91902 0.92825 0.91436 0.89421 0.90287 0.87826 0.90212 0.89002 0.90959 0.89829 0.91254 0.92571 0.90655 0.92062 0.91828 0.91659 0.91692 0.92674 0.95565 0.92706 0.94089 0.91547 0.89487 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.79 37.16 0.36 -1.27 16 2 C -0.11 -1.11 5.09 -26.73 -0.14 -1.25 16 3 C -0.09 -1.05 1.93 -27.88 -0.05 -1.10 16 4 H 0.11 1.15 5.88 -51.92 -0.31 0.84 16 5 S -0.21 -2.30 19.42 -107.50 -2.09 -4.39 16 6 C -0.13 -0.90 10.55 101.05 1.07 0.17 16 7 C 0.53 8.09 5.77 -10.99 -0.06 8.02 16 8 O -0.53 -9.54 14.95 5.55 0.08 -9.46 16 9 N -0.59 -9.09 2.27 -172.70 -0.39 -9.48 16 10 C 0.09 1.31 5.21 -4.15 -0.02 1.28 16 11 C -0.14 -1.76 5.63 -28.66 -0.16 -1.93 16 12 C -0.14 -1.96 4.94 -29.68 -0.15 -2.10 16 13 C -0.09 -1.39 4.88 -27.97 -0.14 -1.53 16 14 C -0.08 -1.40 0.67 -154.21 -0.10 -1.51 16 15 C -0.12 -1.97 6.20 -25.45 -0.16 -2.13 16 16 C 0.13 2.44 7.24 -2.34 -0.02 2.42 16 17 N -0.61 -14.28 3.11 -168.96 -0.53 -14.80 16 18 C -0.23 -6.46 10.77 -15.06 -0.16 -6.62 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.02 0.61 5.49 -17.43 -0.10 0.52 16 21 N -0.92 -27.84 13.97 55.49 0.78 -27.07 16 22 Si 0.88 21.85 24.54 -169.99 -4.17 17.68 16 23 H -0.29 -6.54 6.09 56.52 0.34 -6.19 16 24 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.27 -6.54 6.27 56.52 0.35 -6.18 16 26 C 0.11 2.20 1.88 -2.58 0.00 2.19 16 27 C 0.13 2.21 4.72 -3.02 -0.01 2.19 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.83 7.01 -51.93 -0.36 0.46 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.56 6.69 -51.93 -0.35 0.21 16 32 H 0.09 1.07 7.64 -51.93 -0.40 0.67 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 35 H 0.08 0.48 6.88 -51.93 -0.36 0.12 16 36 H 0.09 1.55 4.68 -51.93 -0.24 1.31 16 37 H 0.07 0.86 5.56 -51.93 -0.29 0.58 16 38 H 0.08 1.06 5.68 -51.93 -0.29 0.76 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.22 4.61 -51.93 -0.24 0.98 16 42 H 0.06 0.92 7.55 -51.93 -0.39 0.53 16 43 H 0.06 0.87 7.42 -51.93 -0.39 0.49 16 44 H 0.06 1.03 7.49 -51.93 -0.39 0.65 16 45 H 0.06 0.91 7.34 -51.93 -0.38 0.53 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.04 0.87 4.32 -51.93 -0.22 0.64 16 50 H 0.07 1.45 2.86 -51.93 -0.15 1.30 16 51 H 0.09 1.52 6.58 -51.93 -0.34 1.17 16 52 H 0.08 1.49 7.95 -51.93 -0.41 1.07 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -31.38 376.14 -9.05 -40.43 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.56 Total: 4.05 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.15 Total: -2.62 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.14 Total: -51.35 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.17 Total: 17.68 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.09 Total: -4.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.38 -9.05 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.214 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds