Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46813 * 2 1 4 4 H 1.09003 * 109.47200 * 306.92083 * 3 2 1 5 5 S 1.81405 * 109.47110 * 186.91981 * 3 2 1 6 6 C 1.81404 * 102.99785 * 68.62219 * 5 3 2 7 7 C 1.50706 * 109.47006 * 66.92324 * 3 2 1 8 8 O 1.21276 * 120.00175 * 32.27806 * 7 3 2 9 9 N 1.34779 * 119.99566 * 211.99685 * 7 3 2 10 10 C 1.47558 * 118.63847 * 354.36193 * 9 7 3 11 11 C 1.54308 * 111.98085 * 137.75274 * 10 9 7 12 12 C 1.50872 * 110.30516 * 319.64487 * 11 10 9 13 13 C 1.52621 * 109.37579 * 91.76545 * 12 11 10 14 14 C 1.47088 * 114.25947 * 275.25770 * 13 12 11 15 15 C 1.54256 * 112.34220 * 301.71839 * 14 13 12 16 16 C 1.54397 * 104.94343 * 237.62724 * 15 14 13 17 17 N 1.48149 * 104.61850 * 23.87685 * 16 15 14 18 18 C 1.36940 * 127.83114 * 140.43217 * 17 16 15 19 19 H 1.08000 * 120.00028 * 346.35314 * 18 17 16 20 20 C 1.38815 * 119.99682 * 166.36082 * 18 17 16 21 21 N 1.31624 * 119.99688 * 350.63815 * 20 18 17 22 22 Si 1.86793 * 120.00083 * 170.64222 * 20 18 17 23 23 H 1.48495 * 109.47282 * 89.99428 * 22 20 18 24 24 H 1.48503 * 109.47426 * 209.99966 * 22 20 18 25 25 H 1.48505 * 109.46986 * 329.99906 * 22 20 18 26 26 C 1.48152 * 104.32798 * 320.43288 * 17 16 15 27 27 C 1.44591 * 118.63066 * 174.62403 * 9 7 3 28 28 H 1.08995 * 109.47166 * 59.83346 * 1 2 3 29 29 H 1.09001 * 109.46873 * 179.83289 * 1 2 3 30 30 H 1.09000 * 109.47164 * 299.83012 * 1 2 3 31 31 H 1.09002 * 109.47124 * 240.00299 * 2 1 3 32 32 H 1.08996 * 109.47519 * 119.99996 * 2 1 3 33 33 H 1.09005 * 109.47019 * 63.57045 * 6 5 3 34 34 H 1.08998 * 109.47212 * 183.57063 * 6 5 3 35 35 H 1.09002 * 109.47206 * 303.57318 * 6 5 3 36 36 H 1.09006 * 108.93625 * 258.55859 * 10 9 7 37 37 H 1.08997 * 108.94179 * 17.16810 * 10 9 7 38 38 H 1.08992 * 109.35183 * 199.33974 * 11 10 9 39 39 H 1.09005 * 109.20673 * 79.85605 * 11 10 9 40 40 H 1.08994 * 109.49183 * 331.79248 * 12 11 10 41 41 H 1.08999 * 109.49811 * 211.73803 * 12 11 10 42 42 H 1.08998 * 108.52409 * 154.02048 * 13 12 11 43 43 H 1.09000 * 108.40234 * 36.40845 * 13 12 11 44 44 H 1.08996 * 110.34352 * 356.49376 * 15 14 13 45 45 H 1.09003 * 110.34542 * 118.76294 * 15 14 13 46 46 H 1.08999 * 110.40504 * 142.66431 * 16 15 14 47 47 H 1.09002 * 110.40775 * 265.08762 * 16 15 14 48 48 H 0.96997 * 119.99587 * 179.97438 * 21 20 18 49 49 H 1.09000 * 110.40485 * 280.75509 * 26 17 16 50 50 H 1.08998 * 110.40538 * 158.33097 * 26 17 16 51 51 H 1.09004 * 109.47166 * 30.57148 * 27 9 7 52 52 H 1.09008 * 109.46469 * 150.55028 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5790 1.9909 -0.8216 5 16 3.8423 1.4468 -0.2061 6 6 4.0592 0.8700 -1.9122 7 6 1.6823 2.1018 1.3072 8 8 1.6364 1.4444 2.3253 9 7 1.4189 3.4230 1.3456 10 6 1.6115 4.2186 0.1179 11 6 0.4646 5.2271 -0.1027 12 6 -0.8609 4.5973 0.2474 13 6 -1.1853 4.8811 1.7115 14 6 -0.5807 3.9328 2.6593 15 6 -1.0086 2.4764 2.3851 16 6 -1.6579 1.9976 3.7015 17 7 -2.1025 3.2411 4.3731 18 6 -3.2612 3.4499 5.0723 19 1 -4.0705 2.7384 5.0012 20 6 -3.3956 4.5763 5.8724 21 7 -2.3533 5.3453 6.1066 22 14 -5.0554 5.0007 6.6167 23 1 -5.1844 4.3474 7.9439 24 1 -5.1643 6.4730 6.7769 25 1 -6.1374 4.5189 5.7207 26 6 -1.0091 4.2073 4.1165 27 6 0.9647 4.0030 2.5898 28 1 -0.3633 0.5164 -0.8884 29 1 -0.3633 -1.0277 -0.0030 30 1 -0.3633 0.5112 0.8915 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.6127 1.5896 -2.5986 34 1 5.1227 0.7718 -2.1301 35 1 3.5725 -0.0978 -2.0333 36 1 2.5545 4.7605 0.1919 37 1 1.6591 3.5440 -0.7369 38 1 0.4525 5.5373 -1.1475 39 1 0.6281 6.1000 0.5293 40 1 -0.8048 3.5203 0.0896 41 1 -1.6420 5.0175 -0.3861 42 1 -2.2677 4.8545 1.8378 43 1 -0.8342 5.8842 1.9535 44 1 -1.7323 2.4410 1.5708 45 1 -0.1388 1.8642 2.1470 46 1 -2.5114 1.3529 3.4918 47 1 -0.9269 1.4735 4.3173 48 1 -2.4473 6.1325 6.6654 49 1 -0.1768 4.0291 4.7974 50 1 -1.3733 5.2295 4.2194 51 1 1.3914 3.4491 3.4261 52 1 1.2839 5.0439 2.6432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = 2.530866 kcal Electronic energy + Delta-G solvation = -30584.962400 eV Core-core repulsion = 26904.862759 eV Total energy + Delta-G solvation = -3680.099641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.94637 -38.23447 -36.22721 -34.65870 -33.54298 -32.70382 -30.93365 -29.26632 -28.53705 -28.08716 -27.16467 -25.47535 -24.55767 -23.39861 -22.00656 -20.94368 -20.29325 -18.93943 -18.04615 -17.65985 -16.95925 -16.68530 -15.92740 -15.54791 -14.85303 -14.78356 -14.51189 -14.34292 -14.05550 -13.90141 -13.78255 -13.50754 -13.31064 -13.17538 -12.83994 -12.70754 -12.63434 -12.54994 -12.09097 -11.87068 -11.70522 -11.54847 -11.31993 -11.04105 -10.97789 -10.93676 -10.78076 -10.75430 -10.51263 -10.17901 -10.15418 -10.02252 -9.78164 -9.74334 -9.68227 -9.50216 -9.43026 -8.58596 -8.26808 -7.98901 -6.72505 -5.68724 -3.00631 1.07658 2.16535 2.90561 3.10485 3.42646 3.48082 3.49828 4.23477 4.39221 4.55142 4.58079 4.76319 4.78599 4.80363 4.97287 5.09942 5.18809 5.23772 5.27429 5.33177 5.36142 5.47798 5.52330 5.55963 5.64936 5.68391 5.79833 5.83077 5.88934 5.94767 6.06401 6.12146 6.13725 6.16385 6.21942 6.27772 6.29625 6.47819 6.63205 6.76086 6.83022 6.84656 6.98160 7.00147 7.22552 7.41387 7.50446 7.66181 7.82277 8.24120 8.33757 9.22630 9.85793 10.65443 11.44898 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.003432 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.753150 B = 8155.791099 C = 8629.705055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.090 4.090 4 H 0.108 0.892 5 S -0.220 6.220 6 C -0.128 4.128 7 C 0.534 3.466 8 O -0.511 6.511 9 N -0.590 5.590 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.093 4.093 14 C -0.090 4.090 15 C -0.145 4.145 16 C 0.129 3.871 17 N -0.596 5.596 18 C -0.218 4.218 19 H 0.074 0.926 20 C -0.010 4.010 21 N -0.917 5.917 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.171 3.829 27 C 0.124 3.876 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.037 0.963 47 H 0.021 0.979 48 H 0.252 0.748 49 H 0.019 0.981 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.519 -4.380 -20.406 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.145 4.145 3 C -0.221 4.221 4 H 0.126 0.874 5 S 0.007 5.993 6 C -0.297 4.297 7 C 0.319 3.681 8 O -0.387 6.387 9 N -0.322 5.322 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.153 4.153 13 C -0.130 4.130 14 C -0.093 4.093 15 C -0.183 4.183 16 C 0.002 3.998 17 N -0.320 5.320 18 C -0.346 4.346 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.045 3.955 27 C 0.002 3.998 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.107 0.893 51 H 0.104 0.896 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.178 -4.231 -18.956 22.924 hybrid contribution -1.771 0.048 -0.597 1.870 sum 10.406 -4.183 -19.553 22.541 Atomic orbital electron populations 1.21965 0.94599 1.02609 1.02800 1.21692 0.96860 0.92359 1.03620 1.23634 0.96074 1.01587 1.00791 0.87419 1.87184 1.05834 1.88350 1.17907 1.23497 1.06408 1.04193 0.95598 1.19424 0.77186 0.82398 0.89067 1.90725 1.50873 1.62858 1.34270 1.47675 1.65328 1.07272 1.11880 1.22137 0.98618 0.94479 0.86419 1.21855 0.94933 0.98483 1.01664 1.21102 0.95815 1.00953 0.97465 1.20291 1.01667 0.98542 0.92534 1.21238 0.92764 0.95652 0.99611 1.23178 1.00699 0.96098 0.98315 1.21625 0.95750 0.90265 0.92136 1.44947 1.19315 1.06424 1.61272 1.19003 0.90168 1.06437 1.19019 0.90845 1.24816 0.97416 0.99321 0.99035 1.69891 1.27585 1.17360 1.41646 0.86173 0.83484 0.77350 0.79090 1.21642 1.21688 1.20764 1.21574 0.89859 0.96919 0.87189 1.21830 0.95036 0.98154 0.84813 0.93014 0.91958 0.90961 0.91531 0.89252 0.90409 0.87811 0.90152 0.91332 0.90671 0.91139 0.91136 0.91906 0.92383 0.91750 0.92729 0.93609 0.89441 0.94429 0.96083 0.93810 0.96285 0.89310 0.89584 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.74 37.16 0.36 -1.40 16 2 C -0.11 -1.12 5.13 -26.73 -0.14 -1.26 16 3 C -0.09 -0.98 1.88 -27.88 -0.05 -1.04 16 4 H 0.11 0.98 5.80 -51.92 -0.30 0.68 16 5 S -0.22 -2.29 21.75 -107.50 -2.34 -4.63 16 6 C -0.13 -0.80 10.57 101.05 1.07 0.27 16 7 C 0.53 7.76 4.34 -10.98 -0.05 7.71 16 8 O -0.51 -9.42 13.39 5.56 0.07 -9.34 16 9 N -0.59 -8.05 2.03 -172.34 -0.35 -8.40 16 10 C 0.11 1.08 6.06 -2.78 -0.02 1.06 16 11 C -0.13 -1.31 5.71 -27.11 -0.15 -1.47 16 12 C -0.12 -1.46 5.35 -27.99 -0.15 -1.61 16 13 C -0.09 -1.54 3.86 -29.76 -0.11 -1.66 16 14 C -0.09 -1.67 0.67 -155.01 -0.10 -1.78 16 15 C -0.14 -2.75 4.55 -25.34 -0.12 -2.86 16 16 C 0.13 2.95 7.23 -2.40 -0.02 2.93 16 17 N -0.60 -15.77 3.38 -168.87 -0.57 -16.34 16 18 C -0.22 -6.23 10.36 -15.06 -0.16 -6.39 16 19 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 20 C -0.01 -0.27 5.41 -17.43 -0.09 -0.37 16 21 N -0.92 -27.19 10.77 55.49 0.60 -26.59 16 22 Si 0.91 22.40 29.56 -169.99 -5.03 17.37 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.17 4.14 5.05 -2.43 -0.01 4.13 16 27 C 0.12 2.05 4.37 -4.08 -0.02 2.03 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.00 5.14 -51.93 -0.27 0.73 16 31 H 0.07 0.55 6.83 -51.93 -0.35 0.20 16 32 H 0.09 1.13 7.60 -51.93 -0.39 0.74 16 33 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.45 7.00 -51.92 -0.36 0.08 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.64 5.13 -51.93 -0.27 0.37 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.74 7.32 -51.93 -0.38 0.36 16 40 H 0.06 0.83 6.07 -51.93 -0.32 0.51 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.89 7.37 -51.93 -0.38 0.50 16 44 H 0.05 0.84 6.96 -51.93 -0.36 0.48 16 45 H 0.09 1.59 1.50 -51.93 -0.08 1.51 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.02 0.50 7.48 -51.93 -0.39 0.11 16 50 H 0.09 2.37 6.12 -51.93 -0.32 2.06 16 51 H 0.09 1.64 6.82 -51.93 -0.35 1.29 16 52 H 0.07 1.08 8.08 -51.92 -0.42 0.66 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -32.36 385.28 -10.29 -42.64 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.72 Total: 1.17 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.24 Total: -1.69 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.32 Total: -51.33 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.34 Total: -4.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.36 -10.29 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.173 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds