Wall clock time and date at job start Sat Apr 11 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 H 1.08994 * 109.47625 * 305.00604 * 3 2 1 5 5 F 1.39904 * 109.46862 * 65.00435 * 3 2 1 6 6 C 1.50699 * 109.47184 * 184.99965 * 3 2 1 7 7 O 1.21277 * 120.00357 * 315.00828 * 6 3 2 8 8 N 1.34777 * 119.99967 * 135.00146 * 6 3 2 9 9 C 1.47536 * 125.56467 * 359.69979 * 8 6 3 10 10 C 1.53843 * 104.86909 * 203.94132 * 9 8 6 11 11 C 1.52150 * 110.39666 * 81.80731 * 10 9 8 12 12 C 1.53343 * 109.43131 * 64.30419 * 11 10 9 13 13 N 1.46926 * 108.68637 * 53.38609 * 12 11 10 14 14 C 1.36942 * 120.57038 * 125.64386 * 13 12 11 15 15 H 1.08003 * 119.99663 * 332.41830 * 14 13 12 16 16 C 1.38809 * 120.00450 * 152.42294 * 14 13 12 17 17 N 1.31615 * 120.00019 * 159.35106 * 16 14 13 18 18 Si 1.86806 * 119.99724 * 339.34453 * 16 14 13 19 19 H 1.48505 * 109.46866 * 93.25059 * 18 16 14 20 20 H 1.48498 * 109.47156 * 213.24745 * 18 16 14 21 21 H 1.48495 * 109.47331 * 333.24878 * 18 16 14 22 22 C 1.46932 * 118.86237 * 305.61474 * 13 12 11 23 23 C 1.52122 * 110.78717 * 205.89118 * 10 9 8 24 24 C 1.54350 * 102.76616 * 323.95686 * 10 9 8 25 25 H 1.09007 * 113.53048 * 157.39324 * 24 10 9 26 26 C 1.54088 * 109.44768 * 285.37282 * 24 10 9 27 27 O 1.42897 * 107.18969 * 134.96791 * 26 24 10 28 28 C 1.44193 * 110.81709 * 341.07350 * 27 26 24 29 29 C 1.46779 * 125.56438 * 180.02562 * 8 6 3 30 30 H 1.08999 * 111.54040 * 55.49549 * 29 8 6 31 31 H 1.08995 * 109.46866 * 299.99440 * 1 2 3 32 32 H 1.08998 * 109.47435 * 59.99580 * 1 2 3 33 33 H 1.08996 * 109.46877 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47030 * 240.00472 * 2 1 3 35 35 H 1.08998 * 109.47435 * 120.00420 * 2 1 3 36 36 H 1.09004 * 110.38326 * 322.86557 * 9 8 6 37 37 H 1.08999 * 110.38604 * 85.22678 * 9 8 6 38 38 H 1.08996 * 109.47942 * 184.29450 * 11 10 9 39 39 H 1.09004 * 109.47728 * 304.32080 * 11 10 9 40 40 H 1.08996 * 109.59851 * 293.62464 * 12 11 10 41 41 H 1.09000 * 109.72958 * 173.22582 * 12 11 10 42 42 H 0.97008 * 119.99685 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.60131 * 294.55829 * 22 13 12 44 44 H 1.09001 * 109.59775 * 174.10010 * 22 13 12 45 45 H 1.09006 * 109.47104 * 55.86865 * 23 10 9 46 46 H 1.08997 * 109.46812 * 175.86773 * 23 10 9 47 47 H 1.08995 * 109.90339 * 254.36642 * 26 24 10 48 48 H 1.09000 * 109.89317 * 15.41460 * 26 24 10 49 49 H 1.09007 * 111.27466 * 242.80233 * 28 27 26 50 50 H 1.08998 * 108.83096 * 121.87662 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 9 1.6699 2.0679 1.1955 6 6 3.5419 1.4443 -0.1238 7 8 4.2064 0.6811 0.5445 8 7 4.1466 2.2942 -0.9774 9 6 3.4611 3.2661 -1.8504 10 6 4.4460 3.5242 -3.0036 11 6 4.3415 2.4217 -4.0470 12 6 2.9471 2.4529 -4.6841 13 7 2.6863 3.8112 -5.1800 14 6 2.3260 4.0191 -6.4847 15 1 2.6431 3.3256 -7.2496 16 6 1.5532 5.1210 -6.8242 17 7 1.5394 5.5578 -8.0657 18 14 0.5326 5.9839 -5.5190 19 1 1.3139 7.1077 -4.9427 20 1 -0.7130 6.5105 -6.1326 21 1 0.1857 5.0197 -4.4443 22 6 2.8182 4.9425 -4.2519 23 6 4.2126 4.8971 -3.6159 24 6 5.8181 3.4724 -2.2985 25 1 6.6450 3.2458 -2.9715 26 6 6.0249 4.7634 -1.4830 27 8 6.5350 4.3784 -0.2049 28 6 6.2715 2.9845 0.0533 29 6 5.5944 2.3991 -1.1951 30 1 6.0278 1.4387 -1.4741 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.5313 2.8440 -2.2317 37 1 3.2648 4.1910 -1.3081 38 1 5.0967 2.5776 -4.8174 39 1 4.5020 1.4544 -3.5710 40 1 2.1983 2.1858 -3.9384 41 1 2.9055 1.7466 -5.5133 42 1 0.9996 6.3282 -8.3028 43 1 2.0588 4.8675 -3.4736 44 1 2.6952 5.8786 -4.7966 45 1 4.2826 5.6582 -2.8387 46 1 4.9667 5.0872 -4.3796 47 1 6.7411 5.4109 -1.9887 48 1 5.0743 5.2834 -1.3644 49 1 5.6198 2.8588 0.9180 50 1 7.2183 2.4745 0.2309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079255764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:53 Heat of formation + Delta-G solvation = -95.056279 kcal Electronic energy + Delta-G solvation = -32833.480115 eV Core-core repulsion = 28582.935602 eV Total energy + Delta-G solvation = -4250.544513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.07420 -41.67696 -39.04987 -38.00153 -35.78375 -34.23619 -33.52620 -31.79318 -30.87158 -30.51227 -28.87236 -27.83359 -26.56104 -24.80732 -23.84606 -22.77446 -22.55897 -21.51136 -20.60366 -19.69542 -18.67732 -18.13534 -16.97008 -16.76344 -16.55693 -16.14236 -15.96167 -15.32799 -15.29143 -15.10199 -14.83283 -14.42288 -14.18717 -14.05256 -13.86843 -13.69406 -13.46474 -13.16694 -13.03002 -12.69031 -12.53175 -12.37503 -12.26167 -12.19612 -12.06395 -11.98730 -11.71756 -11.46366 -11.35799 -11.26391 -11.12813 -10.95786 -10.73031 -10.60587 -10.26865 -10.03669 -9.96184 -9.79682 -9.56170 -9.48702 -8.95686 -8.71906 -7.09630 -6.04421 -3.41468 2.15184 2.49221 3.22489 3.39445 3.41697 3.68795 3.77862 4.15668 4.23535 4.26103 4.38736 4.42696 4.59159 4.65792 4.72934 4.76411 4.90393 4.94237 5.03639 5.07735 5.14787 5.18746 5.28814 5.31246 5.38724 5.43201 5.54199 5.56122 5.62433 5.65649 5.66526 5.68754 5.77957 5.81759 5.86447 5.95803 5.99111 6.02173 6.13706 6.20026 6.25847 6.47402 6.49991 6.50871 6.75027 6.85109 7.13188 7.72884 7.85160 8.23049 8.83045 9.61539 9.97408 11.11396 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.004708 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.367904 B = 5945.554165 C = 7447.714788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.082 3.918 4 H 0.103 0.897 5 F -0.189 7.189 6 C 0.511 3.489 7 O -0.524 6.524 8 N -0.600 5.600 9 C 0.096 3.904 10 C -0.045 4.045 11 C -0.121 4.121 12 C 0.149 3.851 13 N -0.603 5.603 14 C -0.263 4.263 15 H 0.085 0.915 16 C 0.026 3.974 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.125 3.875 23 C -0.126 4.126 24 C -0.120 4.120 25 H 0.115 0.885 26 C 0.056 3.944 27 O -0.383 6.383 28 C 0.049 3.951 29 C 0.110 3.890 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.066 0.934 42 H 0.263 0.737 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -7.009 14.505 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.043 3.957 4 H 0.121 0.879 5 F -0.170 7.170 6 C 0.297 3.703 7 O -0.399 6.399 8 N -0.334 5.334 9 C -0.026 4.026 10 C -0.046 4.046 11 C -0.160 4.160 12 C 0.023 3.977 13 N -0.326 5.326 14 C -0.391 4.391 15 H 0.103 0.897 16 C -0.174 4.174 17 N -0.548 5.548 18 Si 0.711 3.289 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.196 1.196 22 C -0.001 4.001 23 C -0.165 4.165 24 C -0.139 4.139 25 H 0.133 0.867 26 C -0.021 4.021 27 O -0.303 6.303 28 C -0.028 4.028 29 C 0.006 3.994 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.124 -7.225 14.947 17.374 hybrid contribution -0.765 0.562 0.500 1.072 sum 4.359 -6.663 15.447 17.378 Atomic orbital electron populations 1.21780 0.93925 1.02715 1.02742 1.21982 0.97502 0.93235 1.04953 1.21688 0.91553 0.96630 0.85842 0.87944 1.92879 1.91987 1.83980 1.48163 1.20660 0.90283 0.79831 0.79492 1.90719 1.66139 1.39271 1.43786 1.48584 1.07213 1.37021 1.40577 1.22673 0.97175 0.92295 0.90480 1.20926 0.91484 0.98278 0.93951 1.21868 1.01051 0.95908 0.97170 1.20964 0.92112 0.87842 0.96797 1.44331 1.80043 0.99735 1.08520 1.18899 1.27129 1.10914 0.82142 0.89694 1.25279 0.98479 0.98014 0.95593 1.69833 1.41724 1.25401 1.17877 0.86992 0.80472 0.79297 0.82126 1.21581 1.23090 1.19598 1.21393 0.92969 0.92888 0.92855 1.22023 1.01203 0.93428 0.99853 1.23678 0.99722 0.93914 0.96624 0.86729 1.23294 0.99777 0.96022 0.82965 1.88389 1.80368 1.25550 1.35970 1.23489 1.00079 0.81830 0.97394 1.22770 0.81312 1.00376 0.94922 0.88083 0.91956 0.92010 0.91611 0.89665 0.89540 0.89101 0.90702 0.91017 0.92571 0.96244 0.91515 0.92681 0.95735 0.90587 0.91875 0.90512 0.89583 0.91283 0.90668 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.83 37.16 0.37 -0.95 16 2 C -0.14 -1.37 5.41 -26.73 -0.14 -1.52 16 3 C 0.08 0.95 3.54 -27.88 -0.10 0.85 16 4 H 0.10 1.06 6.11 -51.93 -0.32 0.74 16 5 F -0.19 -2.50 16.75 2.25 0.04 -2.46 16 6 C 0.51 6.80 6.74 -10.99 -0.07 6.73 16 7 O -0.52 -8.27 16.51 5.56 0.09 -8.17 16 8 N -0.60 -7.39 2.96 -162.66 -0.48 -7.87 16 9 C 0.10 1.17 4.06 -3.04 -0.01 1.16 16 10 C -0.05 -0.57 0.37 -154.24 -0.06 -0.63 16 11 C -0.12 -1.64 4.89 -26.99 -0.13 -1.77 16 12 C 0.15 2.51 6.20 -3.63 -0.02 2.48 16 13 N -0.60 -12.63 2.75 -172.14 -0.47 -13.10 16 14 C -0.26 -6.79 10.03 -15.06 -0.15 -6.94 16 15 H 0.09 2.37 8.06 -52.48 -0.42 1.95 16 16 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 17 N -0.91 -26.54 13.97 55.49 0.78 -25.77 16 18 Si 0.88 20.97 24.36 -169.99 -4.14 16.83 16 19 H -0.29 -6.60 6.63 56.52 0.37 -6.22 16 20 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.27 -6.22 6.64 56.52 0.38 -5.85 16 22 C 0.12 2.35 3.93 -3.64 -0.01 2.34 16 23 C -0.13 -1.82 4.44 -27.01 -0.12 -1.94 16 24 C -0.12 -1.31 3.45 -87.99 -0.30 -1.62 16 25 H 0.11 1.12 8.13 -51.93 -0.42 0.70 16 26 C 0.06 0.63 6.23 37.73 0.23 0.87 16 27 O -0.38 -5.08 11.32 -35.23 -0.40 -5.48 16 28 C 0.05 0.60 7.44 37.48 0.28 0.88 16 29 C 0.11 1.27 3.27 -66.11 -0.22 1.05 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.55 7.93 -51.93 -0.41 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.09 1.13 4.75 -51.93 -0.25 0.89 16 37 H 0.07 0.91 7.20 -51.93 -0.37 0.53 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.69 7.85 -51.93 -0.41 0.28 16 40 H 0.02 0.31 6.55 -51.93 -0.34 -0.03 16 41 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.02 0.45 6.61 -51.93 -0.34 0.11 16 44 H 0.08 1.63 4.46 -51.93 -0.23 1.40 16 45 H 0.06 0.79 5.88 -51.93 -0.31 0.49 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.81 5.05 -51.93 -0.26 0.54 16 49 H 0.08 1.03 7.34 -51.93 -0.38 0.65 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -30.47 369.39 -7.45 -37.92 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.87 Total: 0.93 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.56 Total: 1.61 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.18 Total: -46.74 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.31 Total: -13.65 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.47 -7.45 -37.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079255764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.134 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds