Wall clock time and date at job start Sat Apr 11 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 H 1.08994 * 109.47625 * 305.00604 * 3 2 1 5 5 F 1.39904 * 109.46862 * 65.00435 * 3 2 1 6 6 C 1.50699 * 109.47184 * 184.99965 * 3 2 1 7 7 O 1.21277 * 120.00357 * 315.00828 * 6 3 2 8 8 N 1.34777 * 119.99967 * 135.00146 * 6 3 2 9 9 C 1.47536 * 125.56467 * 359.69979 * 8 6 3 10 10 C 1.53843 * 104.86909 * 203.94132 * 9 8 6 11 11 C 1.52150 * 110.39666 * 81.80731 * 10 9 8 12 12 C 1.53343 * 109.43131 * 64.30419 * 11 10 9 13 13 N 1.46926 * 108.68637 * 53.38609 * 12 11 10 14 14 C 1.36942 * 120.57038 * 125.64386 * 13 12 11 15 15 H 1.08003 * 119.99663 * 332.41830 * 14 13 12 16 16 C 1.38809 * 120.00450 * 152.42294 * 14 13 12 17 17 N 1.31615 * 120.00019 * 159.35106 * 16 14 13 18 18 Si 1.86806 * 119.99724 * 339.34453 * 16 14 13 19 19 H 1.48505 * 109.46866 * 93.25059 * 18 16 14 20 20 H 1.48498 * 109.47156 * 213.24745 * 18 16 14 21 21 H 1.48495 * 109.47331 * 333.24878 * 18 16 14 22 22 C 1.46932 * 118.86237 * 305.61474 * 13 12 11 23 23 C 1.52122 * 110.78717 * 205.89118 * 10 9 8 24 24 C 1.54350 * 102.76616 * 323.95686 * 10 9 8 25 25 H 1.09007 * 113.53048 * 157.39324 * 24 10 9 26 26 C 1.54088 * 109.44768 * 285.37282 * 24 10 9 27 27 O 1.42897 * 107.18969 * 134.96791 * 26 24 10 28 28 C 1.44193 * 110.81709 * 341.07350 * 27 26 24 29 29 C 1.46779 * 125.56438 * 180.02562 * 8 6 3 30 30 H 1.08999 * 111.54040 * 55.49549 * 29 8 6 31 31 H 1.08995 * 109.46866 * 299.99440 * 1 2 3 32 32 H 1.08998 * 109.47435 * 59.99580 * 1 2 3 33 33 H 1.08996 * 109.46877 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47030 * 240.00472 * 2 1 3 35 35 H 1.08998 * 109.47435 * 120.00420 * 2 1 3 36 36 H 1.09004 * 110.38326 * 322.86557 * 9 8 6 37 37 H 1.08999 * 110.38604 * 85.22678 * 9 8 6 38 38 H 1.08996 * 109.47942 * 184.29450 * 11 10 9 39 39 H 1.09004 * 109.47728 * 304.32080 * 11 10 9 40 40 H 1.08996 * 109.59851 * 293.62464 * 12 11 10 41 41 H 1.09000 * 109.72958 * 173.22582 * 12 11 10 42 42 H 0.97008 * 119.99685 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.60131 * 294.55829 * 22 13 12 44 44 H 1.09001 * 109.59775 * 174.10010 * 22 13 12 45 45 H 1.09006 * 109.47104 * 55.86865 * 23 10 9 46 46 H 1.08997 * 109.46812 * 175.86773 * 23 10 9 47 47 H 1.08995 * 109.90339 * 254.36642 * 26 24 10 48 48 H 1.09000 * 109.89317 * 15.41460 * 26 24 10 49 49 H 1.09007 * 111.27466 * 242.80233 * 28 27 26 50 50 H 1.08998 * 108.83096 * 121.87662 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 9 1.6699 2.0679 1.1955 6 6 3.5419 1.4443 -0.1238 7 8 4.2064 0.6811 0.5445 8 7 4.1466 2.2942 -0.9774 9 6 3.4611 3.2661 -1.8504 10 6 4.4460 3.5242 -3.0036 11 6 4.3415 2.4217 -4.0470 12 6 2.9471 2.4529 -4.6841 13 7 2.6863 3.8112 -5.1800 14 6 2.3260 4.0191 -6.4847 15 1 2.6431 3.3256 -7.2496 16 6 1.5532 5.1210 -6.8242 17 7 1.5394 5.5578 -8.0657 18 14 0.5326 5.9839 -5.5190 19 1 1.3139 7.1077 -4.9427 20 1 -0.7130 6.5105 -6.1326 21 1 0.1857 5.0197 -4.4443 22 6 2.8182 4.9425 -4.2519 23 6 4.2126 4.8971 -3.6159 24 6 5.8181 3.4724 -2.2985 25 1 6.6450 3.2458 -2.9715 26 6 6.0249 4.7634 -1.4830 27 8 6.5350 4.3784 -0.2049 28 6 6.2715 2.9845 0.0533 29 6 5.5944 2.3991 -1.1951 30 1 6.0278 1.4387 -1.4741 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.5313 2.8440 -2.2317 37 1 3.2648 4.1910 -1.3081 38 1 5.0967 2.5776 -4.8174 39 1 4.5020 1.4544 -3.5710 40 1 2.1983 2.1858 -3.9384 41 1 2.9055 1.7466 -5.5133 42 1 0.9996 6.3282 -8.3028 43 1 2.0588 4.8675 -3.4736 44 1 2.6952 5.8786 -4.7966 45 1 4.2826 5.6582 -2.8387 46 1 4.9667 5.0872 -4.3796 47 1 6.7411 5.4109 -1.9887 48 1 5.0743 5.2834 -1.3644 49 1 5.6198 2.8588 0.9180 50 1 7.2183 2.4745 0.2309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079255764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:52 Heat of formation + Delta-G solvation = -114.443592 kcal Electronic energy + Delta-G solvation = -32834.320812 eV Core-core repulsion = 28582.935602 eV Total energy + Delta-G solvation = -4251.385210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.03605 -42.67875 -40.12005 -39.18005 -37.02341 -35.04796 -34.90775 -33.43301 -32.09025 -31.70780 -30.00115 -28.74130 -27.66826 -26.26125 -25.00639 -23.93684 -23.74656 -22.50791 -21.75417 -20.69322 -19.91640 -19.12940 -18.56025 -17.72287 -17.47509 -17.40859 -17.06995 -16.67965 -16.27315 -16.18489 -15.97910 -15.66470 -15.45334 -15.12544 -14.95769 -14.87216 -14.64227 -14.43567 -14.23031 -14.00784 -13.69114 -13.51221 -13.40695 -13.21693 -13.08009 -12.95704 -12.91888 -12.60631 -12.50579 -12.40912 -12.12997 -12.07662 -12.03094 -11.92794 -11.65866 -11.54410 -11.23085 -11.17790 -10.92100 -10.62293 -10.47952 -9.94944 -8.87017 -8.11974 -5.43314 1.14116 1.33433 1.45659 1.53213 1.54485 2.45446 2.76972 2.84227 3.09584 3.23366 3.28035 3.39015 3.41386 3.53100 3.64880 3.79659 3.81867 3.90602 3.96794 4.07936 4.13317 4.29097 4.33931 4.36334 4.41021 4.44783 4.51530 4.56427 4.62998 4.64820 4.69129 4.75170 4.80428 4.85621 4.92312 4.98675 4.99559 5.02873 5.08320 5.11650 5.15302 5.22555 5.28257 5.29938 5.50251 5.92093 5.93608 6.14349 6.17831 6.73109 6.97351 7.68066 8.06648 9.08003 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.004708 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.367904 B = 5945.554165 C = 7447.714788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.080 3.920 4 H 0.119 0.881 5 F -0.200 7.200 6 C 0.509 3.491 7 O -0.553 6.553 8 N -0.596 5.596 9 C 0.095 3.905 10 C -0.041 4.041 11 C -0.108 4.108 12 C 0.144 3.856 13 N -0.615 5.615 14 C -0.243 4.243 15 H 0.050 0.950 16 C -0.035 4.035 17 N -0.960 5.960 18 Si 0.942 3.058 19 H -0.274 1.274 20 H -0.319 1.319 21 H -0.253 1.253 22 C 0.118 3.882 23 C -0.115 4.115 24 C -0.106 4.106 25 H 0.132 0.868 26 C 0.052 3.948 27 O -0.398 6.398 28 C 0.051 3.949 29 C 0.108 3.892 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.259 0.741 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 -7.372 16.532 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.041 3.959 4 H 0.136 0.864 5 F -0.181 7.181 6 C 0.296 3.704 7 O -0.430 6.430 8 N -0.329 5.329 9 C -0.027 4.027 10 C -0.042 4.042 11 C -0.147 4.147 12 C 0.019 3.981 13 N -0.340 5.340 14 C -0.373 4.373 15 H 0.068 0.932 16 C -0.229 4.229 17 N -0.606 5.606 18 Si 0.771 3.229 19 H -0.201 1.201 20 H -0.248 1.248 21 H -0.177 1.177 22 C -0.007 4.007 23 C -0.154 4.154 24 C -0.125 4.125 25 H 0.150 0.850 26 C -0.024 4.024 27 O -0.318 6.318 28 C -0.026 4.026 29 C 0.004 3.996 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.689 -7.603 17.025 19.494 hybrid contribution -0.859 0.601 -0.137 1.057 sum 4.830 -7.002 16.888 18.909 Atomic orbital electron populations 1.21774 0.92819 1.03593 1.02705 1.21988 0.98385 0.92166 1.04884 1.21868 0.90496 0.97752 0.85798 0.86360 1.92856 1.91979 1.84276 1.48996 1.20968 0.90920 0.79419 0.79095 1.90706 1.66901 1.40509 1.44922 1.48596 1.07598 1.36558 1.40154 1.22690 0.97040 0.92628 0.90309 1.20798 0.92917 0.96723 0.93722 1.21705 0.98436 0.97400 0.97152 1.21138 0.94609 0.85380 0.96969 1.44425 1.80206 1.02142 1.07201 1.18830 1.25337 1.09218 0.83883 0.93216 1.25886 1.00157 0.99579 0.97321 1.69976 1.43569 1.26756 1.20298 0.85995 0.78060 0.78951 0.79914 1.20093 1.24847 1.17734 1.21456 0.96043 0.90789 0.92395 1.21882 0.97964 0.95410 1.00190 1.23634 0.99054 0.93585 0.96245 0.84969 1.23403 1.00213 0.96276 0.82481 1.88384 1.80510 1.26018 1.36899 1.23461 1.00453 0.81719 0.96955 1.22877 0.80898 1.00968 0.94816 0.87155 0.92415 0.91577 0.90350 0.88810 0.90561 0.88916 0.90021 0.91639 0.90543 0.94372 0.92767 0.93167 0.94428 0.93337 0.89383 0.91151 0.88079 0.91415 0.92564 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.83 71.98 0.71 -1.55 16 2 C -0.14 -2.43 5.41 30.60 0.17 -2.27 16 3 C 0.08 1.67 3.54 29.85 0.11 1.77 16 4 H 0.12 2.07 6.11 -2.39 -0.01 2.06 16 5 F -0.20 -4.97 16.75 44.97 0.75 -4.21 16 6 C 0.51 12.46 6.74 87.66 0.59 13.05 16 7 O -0.55 -16.65 16.51 -3.02 -0.05 -16.70 16 8 N -0.60 -12.92 2.96 -786.94 -2.33 -15.25 16 9 C 0.10 1.99 4.06 86.47 0.35 2.34 16 10 C -0.04 -0.88 0.37 -52.01 -0.02 -0.90 16 11 C -0.11 -2.60 4.89 30.43 0.15 -2.45 16 12 C 0.14 4.53 6.20 86.41 0.54 5.07 16 13 N -0.62 -24.96 2.75 -698.53 -1.92 -26.88 16 14 C -0.24 -12.70 10.03 84.03 0.84 -11.86 16 15 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 16 C -0.03 -1.92 5.23 84.86 0.44 -1.48 16 17 N -0.96 -58.13 13.97 21.65 0.30 -57.83 16 18 Si 0.94 43.34 24.36 68.60 1.67 45.01 16 19 H -0.27 -11.86 6.63 99.48 0.66 -11.20 16 20 H -0.32 -15.42 7.11 99.48 0.71 -14.71 16 21 H -0.25 -10.75 6.64 99.48 0.66 -10.09 16 22 C 0.12 4.17 3.93 86.41 0.34 4.51 16 23 C -0.12 -2.97 4.44 30.41 0.14 -2.84 16 24 C -0.11 -1.92 3.45 -9.09 -0.03 -1.95 16 25 H 0.13 2.01 8.13 -2.38 -0.02 1.99 16 26 C 0.05 1.00 6.23 72.35 0.45 1.45 16 27 O -0.40 -9.46 11.32 -148.98 -1.69 -11.15 16 28 C 0.05 1.13 7.44 72.19 0.54 1.66 16 29 C 0.11 2.15 3.27 46.02 0.15 2.30 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 0.91 7.93 -2.39 -0.02 0.89 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 36 H 0.09 1.94 4.75 -2.38 -0.01 1.93 16 37 H 0.08 1.66 7.20 -2.39 -0.02 1.64 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.58 7.85 -2.39 -0.02 1.56 16 40 H 0.04 1.09 6.55 -2.39 -0.02 1.08 16 41 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 42 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 43 H 0.04 1.25 6.61 -2.39 -0.02 1.23 16 44 H 0.05 2.00 4.46 -2.39 -0.01 1.99 16 45 H 0.09 1.87 5.88 -2.38 -0.01 1.86 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.07 1.32 5.05 -2.39 -0.01 1.31 16 49 H 0.06 1.46 7.34 -2.38 -0.02 1.45 16 50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -67.39 369.39 3.04 -64.35 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.85 Total: 15.79 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.45 Total: 6.87 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -3.95 Total: -99.96 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.74 Total: -27.85 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.75 Total: -4.21 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.67 Total: 45.01 kcal Total: -67.39 3.04 -64.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079255764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.094 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds