Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.39954 * 2 1 4 4 C 1.55244 * 110.32579 * 122.41118 * 2 1 3 5 5 C 1.54516 * 101.43774 * 155.44579 * 4 2 1 6 6 C 1.53695 * 103.64524 * 325.01281 * 5 4 2 7 7 N 1.47171 * 107.11583 * 21.54297 * 6 5 4 8 8 C 1.34773 * 125.66722 * 181.47274 * 7 6 5 9 9 O 1.21282 * 119.99937 * 180.02562 * 8 7 6 10 10 C 1.50702 * 119.99797 * 0.02562 * 8 7 6 11 11 F 1.39893 * 110.45943 * 310.70579 * 10 8 7 12 12 C 1.54510 * 110.51162 * 188.09501 * 10 8 7 13 13 C 1.54477 * 104.06644 * 241.22179 * 12 10 8 14 14 O 1.44431 * 104.80239 * 23.97743 * 13 12 10 15 15 C 1.44426 * 105.27569 * 319.49013 * 14 13 12 16 16 C 1.52276 * 110.20498 * 83.41899 * 5 4 2 17 17 C 1.53316 * 109.41452 * 182.20486 * 16 5 4 18 18 N 1.46924 * 108.71071 * 306.48991 * 17 16 5 19 19 C 1.36930 * 120.56645 * 234.25739 * 18 17 16 20 20 H 1.08003 * 120.00319 * 27.91355 * 19 18 17 21 21 C 1.38822 * 120.00230 * 207.91051 * 19 18 17 22 22 N 1.31616 * 119.99436 * 17.46244 * 21 19 18 23 23 Si 1.86798 * 120.00257 * 197.46264 * 21 19 18 24 24 H 1.48503 * 109.46884 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46886 * 119.99872 * 23 21 19 26 26 H 1.48499 * 109.46777 * 240.00057 * 23 21 19 27 27 C 1.46941 * 118.86857 * 54.23586 * 18 17 16 28 28 C 1.52276 * 110.21080 * 206.60836 * 5 4 2 29 29 H 1.09001 * 109.47111 * 180.80893 * 1 2 3 30 30 H 1.09001 * 109.47234 * 300.80735 * 1 2 3 31 31 H 1.09003 * 109.46856 * 60.80498 * 1 2 3 32 32 H 1.08996 * 111.20567 * 37.35026 * 4 2 1 33 33 H 1.09005 * 110.94029 * 273.42288 * 4 2 1 34 34 H 1.09007 * 109.90642 * 262.17276 * 6 5 4 35 35 H 1.08998 * 109.91301 * 140.91598 * 6 5 4 36 36 H 1.09003 * 110.51007 * 359.86787 * 12 10 8 37 37 H 1.09000 * 110.50485 * 122.44000 * 12 10 8 38 38 H 1.08991 * 110.37404 * 142.81027 * 13 12 10 39 39 H 1.09000 * 110.36913 * 265.04042 * 13 12 10 40 40 H 1.09004 * 110.37308 * 281.67848 * 15 14 13 41 41 H 1.09004 * 110.37288 * 159.34226 * 15 14 13 42 42 H 1.08994 * 109.48301 * 302.18435 * 16 5 4 43 43 H 1.08994 * 109.48251 * 62.22392 * 16 5 4 44 44 H 1.09006 * 109.59855 * 186.72780 * 17 16 5 45 45 H 1.08997 * 109.72795 * 66.33641 * 17 16 5 46 46 H 0.97002 * 119.99770 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.59538 * 185.99589 * 27 18 17 48 48 H 1.08994 * 109.72929 * 65.60251 * 27 18 17 49 49 H 1.08998 * 109.47746 * 297.77211 * 28 5 4 50 50 H 1.09003 * 109.47608 * 57.78760 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0693 -0.7803 1.2290 5 6 3.4674 -1.2091 0.7303 6 6 3.2522 -1.4749 -0.7681 7 7 2.0430 -0.7381 -1.1693 8 6 1.4981 -0.7339 -2.4020 9 8 0.4957 -0.0868 -2.6197 10 6 2.1343 -1.5334 -3.5098 11 9 3.5075 -1.2736 -3.5738 12 6 1.4596 -1.2159 -4.8630 13 6 0.8754 -2.5714 -5.3184 14 8 0.7043 -3.3276 -4.0998 15 6 1.8780 -3.0433 -3.3077 16 6 4.4685 -0.0804 0.9367 17 6 5.8352 -0.5042 0.3862 18 7 6.2098 -1.7889 0.9927 19 6 7.4086 -1.9306 1.6391 20 1 7.8758 -1.0750 2.1040 21 6 8.0234 -3.1739 1.6969 22 7 7.6589 -4.1274 0.8661 23 14 9.3679 -3.4935 2.9537 24 1 9.5896 -2.2688 3.7637 25 1 8.9576 -4.6082 3.8448 26 1 10.6249 -3.8577 2.2519 27 6 5.2758 -2.9191 0.8943 28 6 3.9130 -2.4796 1.4418 29 1 -0.3633 -1.0276 0.0145 30 1 -0.3634 0.5263 0.8827 31 1 -0.3633 0.5013 -0.8971 32 1 1.4487 -1.6493 1.4476 33 1 2.1476 -0.1295 2.0999 34 1 3.1105 -2.5420 -0.9392 35 1 4.1107 -1.1162 -1.3358 36 1 0.6642 -0.4824 -4.7304 37 1 2.1955 -0.8542 -5.5811 38 1 -0.0854 -2.4241 -5.8116 39 1 1.5706 -3.0787 -5.9873 40 1 2.7278 -3.6239 -3.6666 41 1 1.6874 -3.2585 -2.2562 42 1 4.1253 0.8105 0.4108 43 1 4.5569 0.1370 2.0010 44 1 6.5807 0.2501 0.6380 45 1 5.7776 -0.6142 -0.6967 46 1 8.0882 -4.9963 0.9067 47 1 5.6526 -3.7568 1.4811 48 1 5.1713 -3.2204 -0.1479 49 1 3.9957 -2.2871 2.5115 50 1 3.1804 -3.2683 1.2701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086938899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -97.613853 kcal Electronic energy + Delta-G solvation = -32681.815133 eV Core-core repulsion = 28431.159715 eV Total energy + Delta-G solvation = -4250.655418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.08481 -40.75837 -39.47698 -38.20693 -36.05836 -33.19828 -32.39883 -31.58704 -30.94170 -29.96350 -29.30333 -27.28615 -25.89396 -24.49062 -23.91985 -23.09282 -22.35146 -21.34700 -20.63242 -19.36410 -18.44163 -17.49334 -17.04073 -16.75610 -16.44074 -16.13298 -15.51930 -15.05434 -14.84478 -14.70952 -14.64823 -14.24606 -13.95703 -13.81186 -13.72135 -13.34826 -13.31623 -13.07915 -12.83946 -12.58191 -12.30241 -12.21338 -11.98558 -11.91439 -11.80043 -11.64019 -11.49771 -11.28335 -11.13646 -11.03478 -10.90475 -10.75265 -10.49425 -10.31950 -10.21305 -10.20098 -9.89718 -9.58554 -9.52342 -9.39213 -8.66281 -8.48842 -6.69436 -5.81942 -3.23757 2.28304 2.71742 3.34965 3.43553 3.45317 3.54786 3.78330 4.02180 4.12937 4.47240 4.55092 4.62521 4.73593 4.78883 4.90984 4.96822 5.16310 5.23826 5.24323 5.33579 5.36239 5.37214 5.39342 5.48805 5.53231 5.60251 5.71360 5.71877 5.76493 5.90182 5.92647 6.00084 6.04896 6.14104 6.15755 6.26126 6.35254 6.44920 6.46082 6.55249 6.60236 6.67078 6.78551 6.93006 7.29723 7.40295 7.61350 7.77620 7.91691 8.42131 9.18581 9.81954 10.38211 11.26418 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.003634 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.539614 B = 7702.367331 C = 8726.261147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.054 4.054 6 C 0.101 3.899 7 N -0.601 5.601 8 C 0.526 3.474 9 O -0.524 6.524 10 C 0.073 3.927 11 F -0.178 7.178 12 C -0.171 4.171 13 C 0.047 3.953 14 O -0.360 6.360 15 C 0.034 3.966 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.169 3.831 28 C -0.127 4.127 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.253 0.747 47 H 0.089 0.911 48 H 0.018 0.982 49 H 0.062 0.938 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 4.959 -7.141 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.055 4.055 6 C -0.021 4.021 7 N -0.333 5.333 8 C 0.312 3.688 9 O -0.402 6.402 10 C 0.051 3.949 11 F -0.158 7.158 12 C -0.209 4.209 13 C -0.030 4.030 14 O -0.278 6.278 15 C -0.044 4.044 16 C -0.159 4.159 17 C 0.017 3.983 18 N -0.312 5.312 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.044 3.956 28 C -0.167 4.167 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.036 0.964 49 H 0.081 0.919 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.791 5.010 -7.280 17.230 hybrid contribution 1.195 -0.144 0.577 1.334 sum -13.596 4.866 -6.703 15.920 Atomic orbital electron populations 1.22179 0.94031 1.02602 1.03365 1.22060 0.94811 0.95616 0.84320 0.90491 1.23032 0.96477 1.00150 0.96491 1.20951 0.94068 0.97892 0.92551 1.22492 0.86590 0.96091 0.96885 1.48667 1.28203 1.47807 1.08651 1.19888 0.84571 0.81908 0.82444 1.90622 1.25081 1.42963 1.81488 1.22480 0.77888 0.97798 0.96733 1.92958 1.30512 1.95133 1.97237 1.23545 1.02794 1.00691 0.93873 1.23455 1.02106 0.89530 0.87880 1.89209 1.40259 1.68609 1.29705 1.24013 0.90692 0.90957 0.98707 1.21930 0.96899 0.95551 1.01496 1.20961 0.92985 0.89595 0.94771 1.44025 1.17012 1.06759 1.63449 1.19224 0.97195 0.95122 1.26598 0.91688 1.25015 0.98113 0.97930 0.98477 1.70036 1.44384 1.04370 1.35847 0.86262 0.81547 0.77914 0.81295 1.20283 1.21582 1.21754 1.20819 0.85254 0.91562 0.98009 1.22129 1.00221 0.94217 1.00089 0.92698 0.92063 0.89783 0.90623 0.89880 0.91275 0.89448 0.86954 0.88374 0.88092 0.91400 0.89125 0.87423 0.93112 0.91724 0.92725 0.96310 0.93698 0.89327 0.96375 0.91940 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.71 37.16 0.32 -1.66 16 2 C 0.13 1.72 3.45 -66.20 -0.23 1.49 16 3 H 0.08 0.99 7.74 -51.93 -0.40 0.59 16 4 C -0.12 -1.54 5.42 -24.75 -0.13 -1.67 16 5 C -0.05 -0.81 0.53 -154.09 -0.08 -0.89 16 6 C 0.10 1.51 4.04 -3.31 -0.01 1.50 16 7 N -0.60 -8.52 3.25 -163.07 -0.53 -9.04 16 8 C 0.53 7.73 6.62 -10.99 -0.07 7.66 16 9 O -0.52 -8.47 12.98 5.56 0.07 -8.40 16 10 C 0.07 0.95 1.25 -90.20 -0.11 0.84 16 11 F -0.18 -2.57 15.12 2.25 0.03 -2.54 16 12 C -0.17 -1.83 6.51 -25.16 -0.16 -1.99 16 13 C 0.05 0.45 7.63 37.93 0.29 0.74 16 14 O -0.36 -4.52 11.65 -35.23 -0.41 -4.93 16 15 C 0.03 0.42 6.49 37.94 0.25 0.66 16 16 C -0.12 -1.92 4.78 -26.94 -0.13 -2.04 16 17 C 0.14 2.84 6.22 -3.65 -0.02 2.82 16 18 N -0.59 -13.93 2.98 -172.16 -0.51 -14.44 16 19 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 20 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 21 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 22 N -0.90 -25.31 11.20 55.49 0.62 -24.69 16 23 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.17 3.74 5.05 -3.64 -0.02 3.72 16 28 C -0.13 -2.18 4.71 -26.94 -0.13 -2.31 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.16 5.89 -51.93 -0.31 0.86 16 32 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 33 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 34 H 0.07 1.03 6.17 -51.93 -0.32 0.71 16 35 H 0.09 1.46 5.08 -51.93 -0.26 1.20 16 36 H 0.11 1.29 6.54 -51.93 -0.34 0.95 16 37 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 41 H 0.11 1.32 6.73 -51.93 -0.35 0.97 16 42 H 0.05 0.74 7.47 -51.93 -0.39 0.35 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.02 0.39 6.54 -51.93 -0.34 0.05 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.09 2.24 6.02 -51.93 -0.31 1.93 16 48 H 0.02 0.42 7.47 -51.93 -0.39 0.03 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -29.74 372.78 -8.61 -38.35 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.99 Total: 1.89 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.47 Total: 2.06 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.42 Total: -48.18 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.34 Total: -13.33 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.03 Total: -2.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.74 -8.61 -38.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086938899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.266 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds